Wall clock time and date at job start Tue Mar 31 2020 07:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46663 * 2 1 4 4 C 1.53003 * 109.46945 * 240.00471 * 2 1 3 5 5 C 1.53000 * 109.46945 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47033 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.47006 * 299.99892 * 5 4 2 8 8 O 1.21281 * 119.99686 * 359.40957 * 7 5 4 9 9 N 1.34772 * 120.00044 * 179.41560 * 7 5 4 10 10 C 1.47067 * 136.05919 * 4.87175 * 9 7 5 11 11 C 1.53233 * 88.08588 * 207.20704 * 10 9 7 12 12 O 1.42895 * 114.01987 * 87.71242 * 11 10 9 13 13 C 1.50705 * 114.32518 * 220.47209 * 11 10 9 14 14 H 1.07995 * 119.99978 * 93.75863 * 13 11 10 15 15 C 1.37878 * 119.99719 * 273.75466 * 13 11 10 16 16 N 1.31511 * 119.99906 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99953 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47146 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47206 * 119.99945 * 17 15 13 20 20 H 1.48499 * 109.47162 * 240.00556 * 17 15 13 21 21 C 1.47065 * 136.05829 * 185.24556 * 9 7 5 22 22 C 1.53001 * 109.47483 * 59.99602 * 5 4 2 23 23 C 1.52997 * 109.47078 * 300.00251 * 22 5 4 24 24 C 1.53000 * 109.47370 * 179.97438 * 23 22 5 25 25 C 1.53001 * 109.47375 * 299.99596 * 23 22 5 26 26 C 1.52996 * 109.47462 * 59.99758 * 23 22 5 27 27 H 1.09006 * 109.47090 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47508 * 59.99520 * 1 2 3 29 29 H 1.09000 * 109.47033 * 299.99511 * 1 2 3 30 30 H 1.08996 * 109.46648 * 299.99638 * 4 2 1 31 31 H 1.08996 * 109.47010 * 59.99704 * 4 2 1 32 32 H 1.08998 * 113.46737 * 321.93916 * 10 9 7 33 33 H 1.09008 * 113.46576 * 92.37791 * 10 9 7 34 34 H 0.96708 * 113.99440 * 86.38904 * 12 11 10 35 35 H 0.97006 * 119.99403 * 180.02562 * 16 15 13 36 36 H 1.08999 * 113.47099 * 267.62116 * 21 9 7 37 37 H 1.09007 * 113.46903 * 38.06053 * 21 9 7 38 38 H 1.09006 * 109.46678 * 59.99863 * 22 5 4 39 39 H 1.08997 * 109.47238 * 179.97438 * 22 5 4 40 40 H 1.08997 * 109.46893 * 59.99673 * 24 23 22 41 41 H 1.09000 * 109.47617 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.46813 * 300.00372 * 24 23 22 43 43 H 1.09001 * 109.47035 * 81.55611 * 25 23 22 44 44 H 1.09000 * 109.47102 * 201.55617 * 25 23 22 45 45 H 1.08998 * 109.46964 * 321.56096 * 25 23 22 46 46 H 1.09000 * 109.48017 * 180.02562 * 26 23 22 47 47 H 1.09006 * 109.47293 * 59.99776 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2490 6 1 3.9333 -1.2351 -2.1393 7 6 4.0728 0.6989 -1.2486 8 8 3.2850 1.6210 -1.2594 9 7 5.3978 0.9448 -1.2364 10 6 6.6253 0.1379 -1.3084 11 6 7.3368 1.2432 -0.5209 12 8 7.2407 1.1007 0.8977 13 6 8.7336 1.5455 -0.9993 14 1 8.8995 2.3356 -1.7166 15 6 9.7995 0.8135 -0.5210 16 7 9.5973 -0.1489 0.3522 17 14 11.5310 1.1886 -1.1133 18 1 11.4892 2.3091 -2.0869 19 1 12.3783 1.5710 0.0447 20 1 12.1019 -0.0157 -1.7682 21 6 6.2527 2.1374 -1.1385 22 6 4.0795 -1.4434 0.0002 23 6 3.5695 -0.7222 1.2494 24 6 4.0785 -1.4441 2.4987 25 6 4.0800 0.7202 1.2499 26 6 2.0396 -0.7216 1.2492 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 1.6766 -1.7488 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 6.5575 -0.8049 -0.7656 33 1 7.0047 0.0145 -2.3228 34 1 7.9251 0.5368 1.2835 35 1 10.3474 -0.6637 0.6890 36 1 6.5320 2.5521 -2.1071 37 1 5.8687 2.8916 -0.4514 38 1 3.7158 -2.4709 -0.0001 39 1 5.1695 -1.4441 0.0002 40 1 5.1685 -1.4449 2.4991 41 1 3.7156 -0.9301 3.3887 42 1 3.7145 -2.4716 2.4982 43 1 3.4426 1.3314 0.6109 44 1 4.0587 1.1128 2.2665 45 1 5.1023 0.7438 0.8725 46 1 1.6761 -0.2075 2.1390 47 1 1.6758 -1.7492 1.2489 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193140005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:50 Heat of formation + Delta-G solvation = -55.977474 kcal Electronic energy + Delta-G solvation = -26742.976886 eV Core-core repulsion = 23312.770603 eV Total energy + Delta-G solvation = -3430.206283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94640 -38.65545 -36.78689 -34.11093 -33.62232 -32.22057 -32.06745 -28.64314 -26.80377 -26.31380 -26.06783 -25.43141 -25.02344 -22.56279 -20.41949 -19.84993 -18.71132 -17.83723 -17.35125 -15.97940 -15.45398 -15.32831 -14.92303 -14.89694 -14.28158 -14.16189 -13.67038 -13.64007 -13.13658 -12.85518 -12.64293 -12.52435 -12.26262 -12.17307 -12.00731 -11.73116 -11.60310 -11.55937 -11.50394 -11.13881 -11.09990 -10.90218 -10.63939 -10.50082 -10.40279 -10.35327 -10.22643 -10.03177 -9.62806 -9.56814 -9.45780 -8.93337 -8.75411 -8.35033 -7.70913 -6.42007 -4.51906 3.11778 3.21635 3.23915 3.26607 3.62855 4.16845 4.78958 4.86463 4.89901 4.92998 5.19463 5.29962 5.40588 5.51668 5.56121 5.59668 5.69898 5.80186 5.81239 5.89752 5.96377 6.00535 6.05154 6.06219 6.10843 6.12182 6.16841 6.23446 6.36715 6.39237 6.42843 6.47126 6.51489 6.54149 6.58738 6.71932 6.74945 6.76926 6.80674 6.96427 7.09220 7.38169 7.62580 7.80133 8.51097 8.58352 8.85005 9.19721 9.47363 10.64162 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.027358 B = 0.004865 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.228537 B = 5754.111650 C = 6199.850542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.106 0.894 4 C -0.087 4.087 5 C -0.104 4.104 6 H 0.087 0.913 7 C 0.558 3.442 8 O -0.564 6.564 9 N -0.636 5.636 10 C 0.068 3.932 11 C 0.242 3.758 12 O -0.566 6.566 13 C -0.533 4.533 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.105 3.895 22 C -0.103 4.103 23 C -0.059 4.059 24 C -0.137 4.137 25 C -0.203 4.203 26 C -0.101 4.101 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.393 0.607 35 H 0.273 0.727 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.083 0.917 44 H 0.038 0.962 45 H 0.105 0.895 46 H 0.055 0.945 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.753 -4.651 -0.217 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 H 0.124 0.876 4 C -0.125 4.125 5 C -0.125 4.125 6 H 0.105 0.895 7 C 0.350 3.650 8 O -0.446 6.446 9 N -0.368 5.368 10 C -0.055 4.055 11 C 0.200 3.800 12 O -0.380 6.380 13 C -0.571 4.571 14 H 0.090 0.910 15 C -0.129 4.129 16 N -0.538 5.538 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.017 4.017 22 C -0.140 4.140 23 C -0.059 4.059 24 C -0.194 4.194 25 C -0.259 4.259 26 C -0.138 4.138 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.250 0.750 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.102 0.898 44 H 0.057 0.943 45 H 0.124 0.876 46 H 0.074 0.926 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.792 -3.981 -0.194 11.505 hybrid contribution 1.433 -0.485 -0.258 1.535 sum -9.359 -4.466 -0.452 10.380 Atomic orbital electron populations 1.21779 0.96101 1.00782 1.01193 1.21489 0.94565 1.02813 0.93937 0.87577 1.21325 0.92605 0.99865 0.98727 1.21273 0.97206 0.93957 1.00083 0.89505 1.19721 0.80133 0.90843 0.74295 1.90539 1.54290 1.46787 1.53033 1.49795 1.03525 1.13016 1.70501 1.24237 0.81248 0.98676 1.01326 1.19465 0.91217 0.89044 0.80304 1.86018 1.58097 1.73973 1.19866 1.21478 0.90706 1.18870 1.26032 0.91022 1.25048 0.99978 0.93781 0.94116 1.69266 1.32554 1.21318 1.30672 0.86295 0.83040 0.78483 0.78810 1.19461 1.20650 1.20704 1.23308 0.88272 0.90367 0.99756 1.21712 1.01677 0.98039 0.92603 1.20458 0.94505 0.96621 0.94330 1.21843 1.01629 0.99080 0.96893 1.23048 1.05914 0.94768 1.02174 1.21663 0.94973 0.99595 0.97578 0.93503 0.93018 0.93200 0.92097 0.91825 0.91420 0.90399 0.75048 0.91680 0.90068 0.91691 0.91843 0.90391 0.92137 0.93147 0.93512 0.89824 0.94273 0.87645 0.92588 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 2 C -0.11 -1.61 2.30 -90.62 -0.21 -1.82 16 3 H 0.11 1.89 4.20 -51.93 -0.22 1.68 16 4 C -0.09 -1.24 4.37 -26.73 -0.12 -1.36 16 5 C -0.10 -1.64 2.88 -91.77 -0.26 -1.90 16 6 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 7 C 0.56 10.69 4.32 -10.99 -0.05 10.65 16 8 O -0.56 -12.01 13.20 5.56 0.07 -11.94 16 9 N -0.64 -12.67 2.16 -185.39 -0.40 -13.07 16 10 C 0.07 1.39 7.31 -8.65 -0.06 1.33 16 11 C 0.24 5.48 1.53 -91.39 -0.14 5.34 16 12 O -0.57 -13.57 11.47 -35.23 -0.40 -13.97 16 13 C -0.53 -12.89 8.69 -34.44 -0.30 -13.19 16 14 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 16 N -0.90 -21.92 11.01 55.43 0.61 -21.31 16 17 Si 0.91 19.01 29.54 -169.99 -5.02 13.99 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 21 C 0.11 2.22 7.84 -8.52 -0.07 2.15 16 22 C -0.10 -1.57 4.26 -26.73 -0.11 -1.69 16 23 C -0.06 -0.92 0.77 -154.51 -0.12 -1.04 16 24 C -0.14 -1.98 8.37 37.16 0.31 -1.67 16 25 C -0.20 -3.79 7.08 37.16 0.26 -3.53 16 26 C -0.10 -1.41 4.01 -26.73 -0.11 -1.52 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.07 1.37 5.82 -51.93 -0.30 1.07 16 33 H 0.08 1.54 8.10 -51.92 -0.42 1.12 16 34 H 0.39 9.72 6.33 45.56 0.29 10.01 16 35 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 36 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 37 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.33 5.33 -51.93 -0.28 1.05 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.70 8.12 -51.93 -0.42 0.27 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 1.68 3.06 -51.93 -0.16 1.52 16 44 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 45 H 0.11 2.18 3.23 -51.93 -0.17 2.02 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -25.19 341.03 -7.86 -33.05 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -7.13 Total: 16.09 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.73 Total: -7.98 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.21 Total: -34.37 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.33 Total: -25.91 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -25.19 -7.86 -33.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193140005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.928 kcal (2) G-P(sol) polarization free energy of solvation -25.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds