Wall clock time and date at job start Tue Mar 31 2020 07:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46663 * 2 1 4 4 C 1.53003 * 109.46945 * 240.00471 * 2 1 3 5 5 C 1.53000 * 109.46945 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47033 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.47006 * 299.99892 * 5 4 2 8 8 O 1.21281 * 119.99686 * 359.40957 * 7 5 4 9 9 N 1.34772 * 120.00044 * 179.41560 * 7 5 4 10 10 C 1.47067 * 136.05919 * 4.87175 * 9 7 5 11 11 C 1.53233 * 88.08588 * 207.20704 * 10 9 7 12 12 O 1.42895 * 114.01987 * 87.71242 * 11 10 9 13 13 C 1.50705 * 114.32518 * 220.47209 * 11 10 9 14 14 H 1.07995 * 119.99978 * 93.75863 * 13 11 10 15 15 C 1.37878 * 119.99719 * 273.75466 * 13 11 10 16 16 N 1.31511 * 119.99906 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99953 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47146 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47206 * 119.99945 * 17 15 13 20 20 H 1.48499 * 109.47162 * 240.00556 * 17 15 13 21 21 C 1.47065 * 136.05829 * 185.24556 * 9 7 5 22 22 C 1.53001 * 109.47483 * 59.99602 * 5 4 2 23 23 C 1.52997 * 109.47078 * 300.00251 * 22 5 4 24 24 C 1.53000 * 109.47370 * 179.97438 * 23 22 5 25 25 C 1.53001 * 109.47375 * 299.99596 * 23 22 5 26 26 C 1.52996 * 109.47462 * 59.99758 * 23 22 5 27 27 H 1.09006 * 109.47090 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47508 * 59.99520 * 1 2 3 29 29 H 1.09000 * 109.47033 * 299.99511 * 1 2 3 30 30 H 1.08996 * 109.46648 * 299.99638 * 4 2 1 31 31 H 1.08996 * 109.47010 * 59.99704 * 4 2 1 32 32 H 1.08998 * 113.46737 * 321.93916 * 10 9 7 33 33 H 1.09008 * 113.46576 * 92.37791 * 10 9 7 34 34 H 0.96708 * 113.99440 * 86.38904 * 12 11 10 35 35 H 0.97006 * 119.99403 * 180.02562 * 16 15 13 36 36 H 1.08999 * 113.47099 * 267.62116 * 21 9 7 37 37 H 1.09007 * 113.46903 * 38.06053 * 21 9 7 38 38 H 1.09006 * 109.46678 * 59.99863 * 22 5 4 39 39 H 1.08997 * 109.47238 * 179.97438 * 22 5 4 40 40 H 1.08997 * 109.46893 * 59.99673 * 24 23 22 41 41 H 1.09000 * 109.47617 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.46813 * 300.00372 * 24 23 22 43 43 H 1.09001 * 109.47035 * 81.55611 * 25 23 22 44 44 H 1.09000 * 109.47102 * 201.55617 * 25 23 22 45 45 H 1.08998 * 109.46964 * 321.56096 * 25 23 22 46 46 H 1.09000 * 109.48017 * 180.02562 * 26 23 22 47 47 H 1.09006 * 109.47293 * 59.99776 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2490 6 1 3.9333 -1.2351 -2.1393 7 6 4.0728 0.6989 -1.2486 8 8 3.2850 1.6210 -1.2594 9 7 5.3978 0.9448 -1.2364 10 6 6.6253 0.1379 -1.3084 11 6 7.3368 1.2432 -0.5209 12 8 7.2407 1.1007 0.8977 13 6 8.7336 1.5455 -0.9993 14 1 8.8995 2.3356 -1.7166 15 6 9.7995 0.8135 -0.5210 16 7 9.5973 -0.1489 0.3522 17 14 11.5310 1.1886 -1.1133 18 1 11.4892 2.3091 -2.0869 19 1 12.3783 1.5710 0.0447 20 1 12.1019 -0.0157 -1.7682 21 6 6.2527 2.1374 -1.1385 22 6 4.0795 -1.4434 0.0002 23 6 3.5695 -0.7222 1.2494 24 6 4.0785 -1.4441 2.4987 25 6 4.0800 0.7202 1.2499 26 6 2.0396 -0.7216 1.2492 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 1.6766 -1.7488 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 6.5575 -0.8049 -0.7656 33 1 7.0047 0.0145 -2.3228 34 1 7.9251 0.5368 1.2835 35 1 10.3474 -0.6637 0.6890 36 1 6.5320 2.5521 -2.1071 37 1 5.8687 2.8916 -0.4514 38 1 3.7158 -2.4709 -0.0001 39 1 5.1695 -1.4441 0.0002 40 1 5.1685 -1.4449 2.4991 41 1 3.7156 -0.9301 3.3887 42 1 3.7145 -2.4716 2.4982 43 1 3.4426 1.3314 0.6109 44 1 4.0587 1.1128 2.2665 45 1 5.1023 0.7438 0.8725 46 1 1.6761 -0.2075 2.1390 47 1 1.6758 -1.7492 1.2489 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193140005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:49 Heat of formation + Delta-G solvation = -69.055906 kcal Electronic energy + Delta-G solvation = -26743.544009 eV Core-core repulsion = 23312.770603 eV Total energy + Delta-G solvation = -3430.773406 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.36409 -40.21270 -38.29547 -35.84626 -34.84351 -34.08100 -33.33868 -30.28834 -28.15192 -27.50085 -27.30898 -27.10312 -26.63615 -23.92987 -21.74928 -21.30092 -20.13510 -19.46801 -19.00840 -17.51896 -17.17803 -16.77422 -16.45957 -16.12526 -15.87870 -15.75563 -14.95056 -14.84756 -14.77319 -14.27814 -14.14212 -13.91430 -13.62851 -13.47864 -13.39501 -13.25516 -13.02907 -12.79284 -12.70544 -12.69895 -12.50164 -12.43534 -12.21321 -12.03097 -11.85929 -11.77910 -11.56104 -11.37961 -11.16772 -10.85730 -10.79283 -10.65022 -10.38081 -10.07372 -9.36025 -8.24993 -6.41485 1.45084 1.50587 1.59857 1.74596 2.07757 2.41864 2.96869 3.49796 3.69328 3.74952 3.81072 3.96334 4.13585 4.19984 4.25862 4.35782 4.41079 4.49479 4.54925 4.61656 4.68545 4.76034 4.82049 4.84384 4.87085 4.88373 4.92759 4.93960 4.96737 5.05854 5.06894 5.11341 5.17627 5.20891 5.26984 5.32504 5.37789 5.43538 5.52891 5.58968 5.70802 5.78401 5.87140 5.96349 6.63822 7.01145 7.28603 7.34348 7.55369 8.80146 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.027358 B = 0.004865 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.228537 B = 5754.111650 C = 6199.850542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 H 0.068 0.932 4 C -0.084 4.084 5 C -0.101 4.101 6 H 0.104 0.896 7 C 0.552 3.448 8 O -0.588 6.588 9 N -0.635 5.635 10 C 0.084 3.916 11 C 0.227 3.773 12 O -0.575 6.575 13 C -0.553 4.553 14 H 0.069 0.931 15 C 0.037 3.963 16 N -0.913 5.913 17 Si 0.965 3.035 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.277 1.277 21 C 0.105 3.895 22 C -0.099 4.099 23 C -0.059 4.059 24 C -0.133 4.133 25 C -0.200 4.200 26 C -0.094 4.094 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.387 0.613 35 H 0.276 0.724 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.040 0.960 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.027 0.973 45 H 0.084 0.916 46 H 0.054 0.946 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 -6.728 -0.706 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.086 0.914 4 C -0.121 4.121 5 C -0.122 4.122 6 H 0.122 0.878 7 C 0.346 3.654 8 O -0.472 6.472 9 N -0.367 5.367 10 C -0.039 4.039 11 C 0.185 3.815 12 O -0.387 6.387 13 C -0.591 4.591 14 H 0.087 0.913 15 C -0.164 4.164 16 N -0.554 5.554 17 Si 0.791 3.209 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.202 1.202 21 C -0.018 4.018 22 C -0.136 4.136 23 C -0.059 4.059 24 C -0.190 4.190 25 C -0.256 4.256 26 C -0.132 4.132 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.242 0.758 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.103 0.897 46 H 0.073 0.927 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.770 -6.058 -0.689 13.255 hybrid contribution 1.716 0.248 -0.069 1.735 sum -10.054 -5.810 -0.758 11.636 Atomic orbital electron populations 1.21725 0.94168 1.02191 1.01247 1.21417 0.96218 1.00792 0.94581 0.91388 1.21356 0.91100 1.01552 0.98140 1.21381 0.98463 0.91272 1.01115 0.87805 1.20498 0.79321 0.92360 0.73229 1.90538 1.54657 1.48109 1.53873 1.49789 1.03927 1.12080 1.70935 1.23979 0.80943 0.97890 1.01109 1.19635 0.91321 0.90725 0.79798 1.86025 1.57797 1.73950 1.20957 1.21695 0.91793 1.19172 1.26442 0.91307 1.25665 1.02879 0.93627 0.94207 1.69327 1.33410 1.21661 1.31030 0.85396 0.79156 0.78268 0.78120 1.19409 1.20876 1.20203 1.23259 0.88354 0.90422 0.99792 1.21690 1.00418 0.99549 0.91939 1.20470 0.95876 0.94350 0.95233 1.21796 1.00355 1.00489 0.96374 1.22977 1.04482 0.97318 1.00856 1.21615 0.93325 1.01000 0.97210 0.91310 0.93250 0.93010 0.88861 0.92509 0.91315 0.89729 0.75770 0.91436 0.88947 0.93331 0.88627 0.92469 0.94099 0.92959 0.90893 0.91265 0.95384 0.89746 0.92746 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 2 C -0.11 -3.06 2.30 -10.79 -0.02 -3.08 16 3 H 0.07 2.43 4.20 -2.39 -0.01 2.42 16 4 C -0.08 -2.15 4.37 30.60 0.13 -2.01 16 5 C -0.10 -2.99 2.88 -11.54 -0.03 -3.02 16 6 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 7 C 0.55 21.12 4.32 87.66 0.38 21.50 16 8 O -0.59 -25.50 13.20 -3.03 -0.04 -25.54 16 9 N -0.63 -25.59 2.16 -859.33 -1.86 -27.45 16 10 C 0.08 3.42 7.31 83.08 0.61 4.03 16 11 C 0.23 10.49 1.53 -11.29 -0.02 10.48 16 12 O -0.57 -28.49 11.47 -148.98 -1.71 -30.20 16 13 C -0.55 -27.02 8.69 25.60 0.22 -26.80 16 14 H 0.07 3.32 7.81 -2.91 -0.02 3.29 16 15 C 0.04 1.77 5.40 84.66 0.46 2.23 16 16 N -0.91 -44.74 11.01 21.45 0.24 -44.50 16 17 Si 0.96 38.78 29.54 68.60 2.03 40.81 16 18 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 19 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 20 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 21 C 0.10 4.54 7.84 83.17 0.65 5.19 16 22 C -0.10 -2.79 4.26 30.59 0.13 -2.66 16 23 C -0.06 -1.76 0.77 -52.18 -0.04 -1.80 16 24 C -0.13 -3.62 8.37 71.98 0.60 -3.01 16 25 C -0.20 -7.64 7.08 71.98 0.51 -7.13 16 26 C -0.09 -2.39 4.01 30.59 0.12 -2.27 16 27 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.54 8.09 -2.39 -0.02 1.52 16 32 H 0.07 2.79 5.82 -2.39 -0.01 2.78 16 33 H 0.08 3.32 8.10 -2.38 -0.02 3.30 16 34 H 0.39 19.76 6.33 -74.05 -0.47 19.29 16 35 H 0.28 12.80 8.31 -92.70 -0.77 12.02 16 36 H 0.09 3.73 8.10 -2.39 -0.02 3.71 16 37 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.06 1.88 5.33 -2.39 -0.01 1.87 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.38 8.12 -2.39 -0.02 1.36 16 42 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.07 2.87 3.06 -2.39 -0.01 2.86 16 44 H 0.03 1.07 7.95 -2.39 -0.02 1.05 16 45 H 0.08 3.60 3.23 -2.39 -0.01 3.60 16 46 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -54.89 341.03 3.52 -51.38 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: 0.50 Total: 46.18 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 4.36 Total: -10.69 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -1.62 Total: -71.95 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -1.75 Total: -55.74 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -54.89 3.52 -51.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193140005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.679 kcal (2) G-P(sol) polarization free energy of solvation -54.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds