Wall clock time and date at job start Tue Mar 31 2020 07:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47180 * 119.99622 * 2 1 3 5 5 C 1.53002 * 109.47175 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47024 * 60.00377 * 5 4 2 7 7 C 1.50702 * 109.47073 * 180.02562 * 5 4 2 8 8 O 1.21282 * 119.99869 * 85.38053 * 7 5 4 9 9 N 1.34776 * 119.99782 * 265.37447 * 7 5 4 10 10 C 1.47066 * 136.06213 * 4.71119 * 9 7 5 11 11 C 1.53756 * 87.88968 * 152.96310 * 10 9 7 12 12 O 1.42897 * 114.39418 * 272.67539 * 11 10 9 13 13 C 1.50700 * 114.08949 * 139.78011 * 11 10 9 14 14 H 1.07996 * 120.00110 * 266.56657 * 13 11 10 15 15 C 1.37875 * 119.99803 * 86.55891 * 13 11 10 16 16 N 1.31515 * 120.00041 * 180.02562 * 15 13 11 17 17 Si 1.86802 * 120.00278 * 0.02562 * 15 13 11 18 18 H 1.48505 * 109.47052 * 89.99809 * 17 15 13 19 19 H 1.48492 * 109.47353 * 210.00267 * 17 15 13 20 20 H 1.48502 * 109.47177 * 330.00080 * 17 15 13 21 21 C 1.47077 * 136.05496 * 185.08151 * 9 7 5 22 22 C 1.53000 * 109.47532 * 300.00615 * 5 4 2 23 23 C 1.53001 * 109.47137 * 59.99741 * 22 5 4 24 24 C 1.52999 * 109.47014 * 60.00004 * 23 22 5 25 25 C 1.53001 * 109.47057 * 180.02562 * 23 22 5 26 26 C 1.53000 * 109.47535 * 240.00241 * 2 1 3 27 27 H 1.09000 * 109.47865 * 299.99764 * 1 2 3 28 28 H 1.08995 * 109.47255 * 60.00490 * 1 2 3 29 29 H 1.09010 * 109.46831 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47168 * 60.00894 * 4 2 1 31 31 H 1.08997 * 109.47463 * 300.00546 * 4 2 1 32 32 H 1.09006 * 113.46555 * 267.69506 * 10 9 7 33 33 H 1.09000 * 113.46431 * 38.12935 * 10 9 7 34 34 H 0.96697 * 114.00340 * 273.58750 * 12 11 10 35 35 H 0.97000 * 120.00100 * 180.02562 * 16 15 13 36 36 H 1.09002 * 113.46565 * 321.86374 * 21 9 7 37 37 H 1.09001 * 113.46526 * 92.24553 * 21 9 7 38 38 H 1.09002 * 109.47299 * 179.97438 * 22 5 4 39 39 H 1.09000 * 109.46772 * 299.99916 * 22 5 4 40 40 H 1.09003 * 109.46613 * 60.00238 * 24 23 22 41 41 H 1.08995 * 109.46575 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.47261 * 300.00124 * 24 23 22 43 43 H 1.08997 * 109.47509 * 59.99473 * 25 23 22 44 44 H 1.08999 * 109.47008 * 179.97438 * 25 23 22 45 45 H 1.09002 * 109.46436 * 299.99926 * 25 23 22 46 46 H 1.09000 * 109.46772 * 299.99909 * 26 2 1 47 47 H 1.08999 * 109.47088 * 59.99698 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5699 -0.7206 1.2496 6 1 3.9329 0.3072 1.2498 7 6 4.0723 -1.4315 2.4798 8 8 4.1951 -2.6381 2.4752 9 7 4.3851 -0.7264 3.5850 10 6 4.2971 0.6807 4.0036 11 6 4.2036 0.1836 5.4556 12 8 2.8764 -0.1157 5.8927 13 6 4.9859 1.0129 6.4412 14 1 5.9971 0.7344 6.6985 15 6 4.4106 2.1271 7.0143 16 7 5.0935 2.8511 7.8741 17 14 2.6613 2.6085 6.5697 18 1 1.7136 1.9462 7.5016 19 1 2.5113 4.0820 6.6755 20 1 2.3684 2.1799 5.1784 21 6 4.9710 -1.0244 4.9007 22 6 4.0806 -1.4414 0.0003 23 6 3.5706 -0.7201 -1.2489 24 6 4.0799 0.7226 -1.2485 25 6 4.0807 -1.4413 -2.4981 26 6 2.0400 -0.7212 -1.2492 27 1 -0.3635 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.6767 -1.7489 1.2493 31 1 1.6766 -0.2074 2.1392 32 1 5.2022 1.2522 3.7980 33 1 3.3936 1.1813 3.6556 34 1 2.3958 0.6473 6.2417 35 1 4.6886 3.6348 8.2776 36 1 4.6415 -1.9764 5.3169 37 1 6.0538 -0.9033 4.9312 38 1 5.1706 -1.4406 0.0004 39 1 3.7176 -2.4692 0.0001 40 1 5.1700 0.7229 -1.2483 41 1 3.7170 1.2362 -2.1387 42 1 3.7162 1.2361 -0.3585 43 1 3.7175 -2.4690 -2.4982 44 1 3.7170 -0.9278 -3.3881 45 1 5.1707 -1.4412 -2.4980 46 1 1.6767 -1.7488 -1.2492 47 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193140021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:53 Heat of formation + Delta-G solvation = -65.022342 kcal Electronic energy + Delta-G solvation = -25583.193219 eV Core-core repulsion = 22152.594721 eV Total energy + Delta-G solvation = -3430.598498 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47389 -39.29987 -37.42683 -34.56870 -34.17904 -32.57805 -32.14176 -28.90862 -27.47321 -26.75481 -26.36825 -25.74338 -25.24863 -22.79789 -20.59659 -20.16888 -18.54626 -18.42061 -17.43733 -16.50057 -16.39361 -15.50075 -15.21143 -14.91813 -14.70435 -14.48504 -14.01792 -13.71596 -13.59411 -13.40081 -12.96659 -12.80427 -12.65931 -12.58339 -12.32637 -12.23156 -12.05341 -11.91306 -11.82894 -11.53842 -11.22303 -11.12842 -11.01804 -10.96842 -10.81917 -10.59118 -10.48596 -10.22461 -10.13351 -10.02299 -9.61132 -9.22347 -9.01412 -8.67719 -8.01427 -6.45374 -4.51272 2.96703 2.99514 3.08418 3.12210 3.41967 3.99714 4.47833 4.51804 4.59836 4.65143 4.89094 4.98196 5.01063 5.09697 5.15125 5.24843 5.37426 5.43443 5.50318 5.53539 5.54444 5.58588 5.65779 5.71021 5.74425 5.79941 5.86727 5.91303 5.97510 6.01521 6.03892 6.10799 6.14654 6.18507 6.23871 6.25578 6.30725 6.31321 6.38117 6.46557 6.51184 6.59088 7.16386 7.98107 8.36226 8.49082 8.58572 8.66862 9.12232 10.66816 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.004549 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.454060 B = 6153.325290 C = 6636.249667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.101 4.101 5 C -0.099 4.099 6 H 0.087 0.913 7 C 0.541 3.459 8 O -0.559 6.559 9 N -0.637 5.637 10 C 0.062 3.938 11 C 0.196 3.804 12 O -0.549 6.549 13 C -0.534 4.534 14 H 0.093 0.907 15 C 0.081 3.919 16 N -0.875 5.875 17 Si 0.859 3.141 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.257 1.257 21 C 0.119 3.881 22 C -0.088 4.088 23 C -0.065 4.065 24 C -0.146 4.146 25 C -0.139 4.139 26 C -0.102 4.102 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.351 0.649 35 H 0.271 0.729 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.063 0.937 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.631 -1.810 -17.785 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.092 0.908 4 C -0.139 4.139 5 C -0.120 4.120 6 H 0.106 0.894 7 C 0.331 3.669 8 O -0.439 6.439 9 N -0.370 5.370 10 C -0.062 4.062 11 C 0.155 3.845 12 O -0.360 6.360 13 C -0.571 4.571 14 H 0.111 0.889 15 C -0.125 4.125 16 N -0.511 5.511 17 Si 0.688 3.312 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.183 1.183 21 C -0.003 4.003 22 C -0.126 4.126 23 C -0.065 4.065 24 C -0.204 4.204 25 C -0.197 4.197 26 C -0.139 4.139 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.203 0.797 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.443 -2.984 -18.038 19.076 hybrid contribution -0.979 1.078 0.110 1.461 sum -6.422 -1.906 -17.929 19.139 Atomic orbital electron populations 1.21815 0.95164 1.01827 1.01585 1.21171 0.95405 0.99869 0.94580 0.90770 1.21503 0.92720 1.01621 0.98065 1.21254 0.97248 1.00612 0.92908 0.89433 1.20098 0.77417 0.86897 0.82492 1.90630 1.55854 1.14221 1.83176 1.49746 1.60940 1.11895 1.14441 1.24486 1.01374 0.82887 0.97427 1.20279 0.81340 0.92884 0.90032 1.86479 1.27931 1.38111 1.83518 1.21157 1.02180 1.09318 1.24482 0.88940 1.24998 0.97641 0.95787 0.94060 1.69849 1.37190 1.16749 1.27292 0.87324 0.85437 0.78533 0.79943 1.19256 1.20988 1.18271 1.23137 0.98052 0.99756 0.79357 1.21435 1.00290 0.99521 0.91360 1.20555 0.95313 0.95649 0.94962 1.21996 1.00954 0.95550 1.01855 1.21838 1.00988 1.00164 0.96681 1.21669 0.94256 1.00711 0.97291 0.92589 0.92778 0.92704 0.91257 0.91489 0.88900 0.91866 0.79669 0.91840 0.91100 0.88865 0.91906 0.90740 0.92696 0.92830 0.91977 0.92651 0.92767 0.92646 0.91849 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.19 37.15 0.34 -1.08 16 2 C -0.09 -0.98 2.44 -90.63 -0.22 -1.21 16 3 H 0.07 0.79 6.43 -51.93 -0.33 0.45 16 4 C -0.10 -1.38 4.47 -26.73 -0.12 -1.50 16 5 C -0.10 -1.46 2.14 -91.77 -0.20 -1.66 16 6 H 0.09 1.23 6.15 -51.93 -0.32 0.91 16 7 C 0.54 10.46 7.08 -10.98 -0.08 10.38 16 8 O -0.56 -12.46 17.04 5.56 0.09 -12.36 16 9 N -0.64 -12.81 3.69 -185.02 -0.68 -13.49 16 10 C 0.06 1.22 7.08 -8.37 -0.06 1.16 16 11 C 0.20 4.45 1.10 -91.12 -0.10 4.35 16 12 O -0.55 -12.98 13.33 -35.23 -0.47 -13.45 16 13 C -0.53 -13.64 9.27 -34.44 -0.32 -13.96 16 14 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 15 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.88 -24.22 13.96 55.43 0.77 -23.45 16 17 Si 0.86 18.74 24.42 -169.99 -4.15 14.58 16 18 H -0.27 -5.69 7.06 56.52 0.40 -5.29 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 20 H -0.26 -5.26 5.50 56.52 0.31 -4.95 16 21 C 0.12 2.51 8.03 -8.50 -0.07 2.44 16 22 C -0.09 -1.15 3.67 -26.73 -0.10 -1.25 16 23 C -0.06 -0.66 0.77 -154.48 -0.12 -0.78 16 24 C -0.15 -1.42 7.78 37.16 0.29 -1.13 16 25 C -0.14 -1.25 8.47 37.16 0.31 -0.94 16 26 C -0.10 -1.00 4.02 -26.70 -0.11 -1.10 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 33 H 0.06 1.20 7.15 -51.93 -0.37 0.83 16 34 H 0.35 7.89 3.16 45.56 0.14 8.04 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.09 1.82 8.10 -51.93 -0.42 1.40 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.06 7.85 -51.93 -0.41 0.66 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.64 4.81 -51.93 -0.25 0.39 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -29.15 355.19 -7.67 -36.82 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.95 Total: 10.28 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.64 Total: -4.27 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.09 Total: -36.94 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.37 Total: -25.82 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.15 Total: 14.58 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.15 -7.67 -36.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193140021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.205 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds