Wall clock time and date at job start Tue Mar 31 2020 07:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47180 * 119.99622 * 2 1 3 5 5 C 1.53002 * 109.47175 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47024 * 60.00377 * 5 4 2 7 7 C 1.50702 * 109.47073 * 180.02562 * 5 4 2 8 8 O 1.21282 * 119.99869 * 85.38053 * 7 5 4 9 9 N 1.34776 * 119.99782 * 265.37447 * 7 5 4 10 10 C 1.47066 * 136.06213 * 4.71119 * 9 7 5 11 11 C 1.53756 * 87.88968 * 152.96310 * 10 9 7 12 12 O 1.42897 * 114.39418 * 272.67539 * 11 10 9 13 13 C 1.50700 * 114.08949 * 139.78011 * 11 10 9 14 14 H 1.07996 * 120.00110 * 266.56657 * 13 11 10 15 15 C 1.37875 * 119.99803 * 86.55891 * 13 11 10 16 16 N 1.31515 * 120.00041 * 180.02562 * 15 13 11 17 17 Si 1.86802 * 120.00278 * 0.02562 * 15 13 11 18 18 H 1.48505 * 109.47052 * 89.99809 * 17 15 13 19 19 H 1.48492 * 109.47353 * 210.00267 * 17 15 13 20 20 H 1.48502 * 109.47177 * 330.00080 * 17 15 13 21 21 C 1.47077 * 136.05496 * 185.08151 * 9 7 5 22 22 C 1.53000 * 109.47532 * 300.00615 * 5 4 2 23 23 C 1.53001 * 109.47137 * 59.99741 * 22 5 4 24 24 C 1.52999 * 109.47014 * 60.00004 * 23 22 5 25 25 C 1.53001 * 109.47057 * 180.02562 * 23 22 5 26 26 C 1.53000 * 109.47535 * 240.00241 * 2 1 3 27 27 H 1.09000 * 109.47865 * 299.99764 * 1 2 3 28 28 H 1.08995 * 109.47255 * 60.00490 * 1 2 3 29 29 H 1.09010 * 109.46831 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47168 * 60.00894 * 4 2 1 31 31 H 1.08997 * 109.47463 * 300.00546 * 4 2 1 32 32 H 1.09006 * 113.46555 * 267.69506 * 10 9 7 33 33 H 1.09000 * 113.46431 * 38.12935 * 10 9 7 34 34 H 0.96697 * 114.00340 * 273.58750 * 12 11 10 35 35 H 0.97000 * 120.00100 * 180.02562 * 16 15 13 36 36 H 1.09002 * 113.46565 * 321.86374 * 21 9 7 37 37 H 1.09001 * 113.46526 * 92.24553 * 21 9 7 38 38 H 1.09002 * 109.47299 * 179.97438 * 22 5 4 39 39 H 1.09000 * 109.46772 * 299.99916 * 22 5 4 40 40 H 1.09003 * 109.46613 * 60.00238 * 24 23 22 41 41 H 1.08995 * 109.46575 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.47261 * 300.00124 * 24 23 22 43 43 H 1.08997 * 109.47509 * 59.99473 * 25 23 22 44 44 H 1.08999 * 109.47008 * 179.97438 * 25 23 22 45 45 H 1.09002 * 109.46436 * 299.99926 * 25 23 22 46 46 H 1.09000 * 109.46772 * 299.99909 * 26 2 1 47 47 H 1.08999 * 109.47088 * 59.99698 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5699 -0.7206 1.2496 6 1 3.9329 0.3072 1.2498 7 6 4.0723 -1.4315 2.4798 8 8 4.1951 -2.6381 2.4752 9 7 4.3851 -0.7264 3.5850 10 6 4.2971 0.6807 4.0036 11 6 4.2036 0.1836 5.4556 12 8 2.8764 -0.1157 5.8927 13 6 4.9859 1.0129 6.4412 14 1 5.9971 0.7344 6.6985 15 6 4.4106 2.1271 7.0143 16 7 5.0935 2.8511 7.8741 17 14 2.6613 2.6085 6.5697 18 1 1.7136 1.9462 7.5016 19 1 2.5113 4.0820 6.6755 20 1 2.3684 2.1799 5.1784 21 6 4.9710 -1.0244 4.9007 22 6 4.0806 -1.4414 0.0003 23 6 3.5706 -0.7201 -1.2489 24 6 4.0799 0.7226 -1.2485 25 6 4.0807 -1.4413 -2.4981 26 6 2.0400 -0.7212 -1.2492 27 1 -0.3635 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.6767 -1.7489 1.2493 31 1 1.6766 -0.2074 2.1392 32 1 5.2022 1.2522 3.7980 33 1 3.3936 1.1813 3.6556 34 1 2.3958 0.6473 6.2417 35 1 4.6886 3.6348 8.2776 36 1 4.6415 -1.9764 5.3169 37 1 6.0538 -0.9033 4.9312 38 1 5.1706 -1.4406 0.0004 39 1 3.7176 -2.4692 0.0001 40 1 5.1700 0.7229 -1.2483 41 1 3.7170 1.2362 -2.1387 42 1 3.7162 1.2361 -0.3585 43 1 3.7175 -2.4690 -2.4982 44 1 3.7170 -0.9278 -3.3881 45 1 5.1707 -1.4412 -2.4980 46 1 1.6767 -1.7488 -1.2492 47 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193140021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:53 Heat of formation + Delta-G solvation = -83.754115 kcal Electronic energy + Delta-G solvation = -25584.005489 eV Core-core repulsion = 22152.594721 eV Total energy + Delta-G solvation = -3431.410769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.83469 -40.64231 -38.96708 -36.36986 -35.02575 -34.57034 -33.28065 -30.60529 -28.19664 -27.67848 -27.43315 -27.23138 -26.95622 -24.09872 -21.86935 -21.44832 -20.04551 -19.49115 -19.25925 -18.21923 -17.98062 -16.87548 -16.53588 -16.00575 -15.90517 -15.64470 -15.38171 -15.25517 -15.04692 -14.58930 -14.53469 -14.27975 -13.88201 -13.82040 -13.52983 -13.46117 -12.95160 -12.89595 -12.76279 -12.66763 -12.63651 -12.42978 -12.41275 -12.09318 -11.94187 -11.93112 -11.72981 -11.56573 -11.26427 -11.13087 -11.08278 -10.89245 -10.71128 -10.41886 -9.68742 -8.44454 -6.56690 1.23845 1.26752 1.39067 1.55363 1.87249 2.15602 2.73828 3.16132 3.39485 3.59167 3.68291 3.77924 3.98046 4.03839 4.05849 4.26662 4.30783 4.34966 4.38765 4.43898 4.48915 4.59826 4.65646 4.66916 4.72342 4.75871 4.78805 4.87728 4.89294 4.91747 4.95544 5.03476 5.05524 5.12153 5.17657 5.20169 5.24989 5.27225 5.29115 5.43035 5.45835 5.51646 5.64392 6.00753 6.51065 6.64135 6.78845 7.07881 7.12431 8.70939 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.004549 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.454060 B = 6153.325290 C = 6636.249667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.083 0.917 4 C -0.098 4.098 5 C -0.091 4.091 6 H 0.101 0.899 7 C 0.535 3.465 8 O -0.594 6.594 9 N -0.639 5.639 10 C 0.077 3.923 11 C 0.185 3.815 12 O -0.558 6.558 13 C -0.542 4.542 14 H 0.059 0.941 15 C 0.031 3.969 16 N -0.921 5.921 17 Si 0.917 3.083 18 H -0.258 1.258 19 H -0.279 1.279 20 H -0.232 1.232 21 C 0.115 3.885 22 C -0.084 4.084 23 C -0.060 4.060 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.099 4.099 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.355 0.645 35 H 0.275 0.725 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.426 -0.642 -20.596 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.101 0.899 4 C -0.137 4.137 5 C -0.112 4.112 6 H 0.119 0.881 7 C 0.327 3.673 8 O -0.476 6.476 9 N -0.372 5.372 10 C -0.046 4.046 11 C 0.144 3.856 12 O -0.370 6.370 13 C -0.579 4.579 14 H 0.078 0.922 15 C -0.171 4.171 16 N -0.558 5.558 17 Si 0.741 3.259 18 H -0.184 1.184 19 H -0.205 1.205 20 H -0.156 1.156 21 C -0.008 4.008 22 C -0.122 4.122 23 C -0.060 4.060 24 C -0.203 4.203 25 C -0.195 4.195 26 C -0.137 4.137 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.208 0.792 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.238 -1.822 -20.867 22.162 hybrid contribution -0.323 0.618 1.066 1.274 sum -7.561 -1.204 -19.801 21.230 Atomic orbital electron populations 1.21805 0.94189 1.01942 1.02305 1.21154 0.96165 0.99858 0.93260 0.89905 1.21508 0.91603 1.01159 0.99390 1.21319 0.98064 1.00738 0.91060 0.88106 1.21030 0.76398 0.86700 0.83218 1.90608 1.57191 1.15938 1.83828 1.49801 1.60996 1.12054 1.14332 1.24290 1.02813 0.82792 0.94717 1.20301 0.80895 0.93552 0.90879 1.86476 1.28046 1.38711 1.83789 1.21245 1.01297 1.09911 1.25486 0.92249 1.25780 1.02039 0.95530 0.93712 1.69982 1.39440 1.17590 1.28831 0.86356 0.79993 0.78384 0.81127 1.18410 1.20510 1.15642 1.23138 0.98656 0.98702 0.80316 1.21427 0.99824 0.98837 0.92136 1.20535 0.95733 0.95910 0.93807 1.21995 1.00922 0.94905 1.02485 1.21824 1.00966 1.00096 0.96619 1.21669 0.93679 1.00672 0.97635 0.93029 0.90908 0.92950 0.92655 0.92694 0.87590 0.90157 0.79169 0.91591 0.92197 0.87826 0.92625 0.92492 0.92874 0.91040 0.92461 0.92932 0.91003 0.92762 0.92317 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.19 71.98 0.66 -1.71 16 2 C -0.09 -1.59 2.44 -10.80 -0.03 -1.62 16 3 H 0.08 1.44 6.43 -2.39 -0.02 1.42 16 4 C -0.10 -2.53 4.47 30.59 0.14 -2.40 16 5 C -0.09 -2.56 2.14 -11.54 -0.02 -2.58 16 6 H 0.10 2.59 6.15 -2.39 -0.01 2.57 16 7 C 0.53 20.43 7.08 87.66 0.62 21.05 16 8 O -0.59 -26.75 17.04 -3.04 -0.05 -26.81 16 9 N -0.64 -25.22 3.69 -858.15 -3.16 -28.38 16 10 C 0.08 2.91 7.08 83.27 0.59 3.50 16 11 C 0.18 8.29 1.10 -11.12 -0.01 8.28 16 12 O -0.56 -25.73 13.33 -148.98 -1.99 -27.71 16 13 C -0.54 -28.09 9.27 25.60 0.24 -27.85 16 14 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 15 C 0.03 1.61 5.47 84.65 0.46 2.07 16 16 N -0.92 -51.86 13.96 21.45 0.30 -51.56 16 17 Si 0.92 37.54 24.42 68.60 1.68 39.22 16 18 H -0.26 -10.24 7.06 99.48 0.70 -9.53 16 19 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.23 -8.52 5.50 99.48 0.55 -7.97 16 21 C 0.11 4.87 8.03 83.18 0.67 5.53 16 22 C -0.08 -2.10 3.67 30.59 0.11 -1.99 16 23 C -0.06 -1.06 0.77 -52.16 -0.04 -1.10 16 24 C -0.15 -2.35 7.78 71.98 0.56 -1.79 16 25 C -0.14 -2.10 8.47 71.98 0.61 -1.49 16 26 C -0.10 -1.62 4.02 30.61 0.12 -1.50 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.11 3.75 8.10 -2.38 -0.02 3.73 16 33 H 0.08 2.78 7.15 -2.39 -0.02 2.76 16 34 H 0.36 15.24 3.16 -74.06 -0.23 15.00 16 35 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.10 4.11 8.10 -2.39 -0.02 4.09 16 38 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.61 7.85 -2.39 -0.02 1.59 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.98 4.81 -2.39 -0.01 0.97 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -63.74 355.19 1.99 -61.75 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: 0.54 Total: 37.10 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 4.68 Total: -3.60 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -2.86 Total: -79.94 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: -2.04 Total: -54.52 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 1.68 Total: 39.22 kcal Total: -63.74 1.99 -61.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193140021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.007 kcal (2) G-P(sol) polarization free energy of solvation -63.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds