Wall clock time and date at job start Tue Mar 31 2020 07:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47906 * 2 1 4 4 C 1.53094 * 109.48183 * 239.97599 * 2 1 3 5 5 C 1.53175 * 109.16197 * 182.39858 * 4 2 1 6 6 H 1.09004 * 109.54267 * 176.93649 * 5 4 2 7 7 C 1.50703 * 109.54107 * 297.10867 * 5 4 2 8 8 O 1.21286 * 119.99970 * 6.70476 * 7 5 4 9 9 N 1.34781 * 119.99583 * 186.69498 * 7 5 4 10 10 C 1.37096 * 120.00386 * 356.17126 * 9 7 5 11 11 H 1.07998 * 120.00157 * 237.20649 * 10 9 7 12 12 C 1.38956 * 119.99635 * 57.20553 * 10 9 7 13 13 N 1.31410 * 120.00161 * 21.37095 * 12 10 9 14 14 Si 1.86797 * 119.99470 * 201.36996 * 12 10 9 15 15 H 1.48504 * 109.46705 * 179.97438 * 14 12 10 16 16 H 1.48496 * 109.47425 * 299.99966 * 14 12 10 17 17 H 1.48504 * 109.47156 * 60.00365 * 14 12 10 18 18 C 1.46498 * 119.99402 * 176.17240 * 9 7 5 19 19 C 1.54273 * 110.03011 * 237.90628 * 18 9 7 20 20 C 1.54963 * 104.16220 * 217.13546 * 19 18 9 21 21 C 1.54894 * 102.77352 * 37.89243 * 20 19 18 22 22 C 1.53878 * 110.03386 * 120.69433 * 18 9 7 23 23 C 1.53175 * 109.03736 * 56.97963 * 5 4 2 24 24 C 1.53095 * 109.16444 * 303.01545 * 23 5 4 25 25 H 1.08999 * 109.48318 * 297.63203 * 24 23 5 26 26 C 1.52998 * 109.48972 * 177.59711 * 24 23 5 27 27 O 1.42901 * 109.48884 * 120.02852 * 2 1 3 28 28 H 1.08998 * 109.46889 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47215 * 300.02261 * 1 2 3 30 30 H 1.08998 * 109.46792 * 60.02701 * 1 2 3 31 31 H 1.08997 * 109.52239 * 62.48691 * 4 2 1 32 32 H 1.09002 * 109.57429 * 302.33353 * 4 2 1 33 33 H 0.96999 * 119.99916 * 174.94322 * 13 12 10 34 34 H 1.09000 * 110.02354 * 359.30084 * 18 9 7 35 35 H 1.08996 * 110.48847 * 335.78861 * 19 18 9 36 36 H 1.09006 * 110.48438 * 98.42798 * 19 18 9 37 37 H 1.08994 * 110.72104 * 279.57844 * 20 19 18 38 38 H 1.09001 * 110.92401 * 156.29477 * 20 19 18 39 39 H 1.08998 * 110.48348 * 203.40318 * 21 20 19 40 40 H 1.08995 * 110.60375 * 80.81754 * 21 20 19 41 41 H 1.08997 * 110.03291 * 238.56527 * 22 18 9 42 42 H 1.09000 * 110.02986 * 359.94443 * 22 18 9 43 43 H 1.08993 * 109.52256 * 62.92786 * 23 5 4 44 44 H 1.09005 * 109.52099 * 183.11475 * 23 5 4 45 45 H 1.08996 * 109.47206 * 300.05593 * 26 24 23 46 46 H 1.08994 * 109.46883 * 60.05535 * 26 24 23 47 47 H 1.08999 * 109.46908 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5711 -0.7705 -1.2123 6 1 3.9393 -1.3309 -2.0717 7 6 4.1209 0.6321 -1.2520 8 8 3.3683 1.5806 -1.1822 9 7 5.4490 0.8323 -1.3649 10 6 6.3061 -0.2377 -1.3645 11 1 7.0965 -0.2962 -0.6310 12 6 6.1578 -1.2469 -2.3081 13 7 5.5111 -1.0102 -3.4273 14 14 6.8776 -2.9401 -1.9854 15 1 6.5838 -3.8305 -3.1370 16 1 8.3477 -2.8276 -1.8086 17 1 6.2729 -3.5086 -0.7540 18 6 5.9765 2.1935 -1.4880 19 6 6.7902 2.3289 -2.7916 20 6 7.9699 3.2574 -2.4075 21 6 8.3165 2.7942 -0.9706 22 6 6.9463 2.4896 -0.3305 23 6 4.0179 -1.4597 0.0807 24 6 3.4310 -0.7090 1.2790 25 1 3.8193 0.3094 1.2956 26 6 3.8232 -1.4259 2.5724 27 8 2.0068 -0.6741 1.1663 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5134 -0.8902 31 1 1.7147 -0.1843 -2.1399 32 1 1.6446 -1.7374 -1.2721 33 1 5.4704 -1.6908 -4.1172 34 1 5.1578 2.9130 -1.4824 35 1 7.1602 1.3555 -3.1133 36 1 6.1838 2.7852 -3.5741 37 1 7.6563 4.3013 -2.4118 38 1 8.8173 3.1074 -3.0765 39 1 8.8238 3.5900 -0.4252 40 1 8.9340 1.8965 -0.9955 41 1 6.5987 3.3533 0.2362 42 1 7.0237 1.6209 0.3233 43 1 3.6618 -2.4898 0.0862 44 1 5.1061 -1.4491 0.1418 45 1 3.4351 -2.4443 2.5553 46 1 4.9094 -1.4524 2.6581 47 1 3.4048 -0.8914 3.4253 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245710316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:22 Heat of formation + Delta-G solvation = -110.875735 kcal Electronic energy + Delta-G solvation = -26854.499498 eV Core-core repulsion = 23421.912647 eV Total energy + Delta-G solvation = -3432.586850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59516 -39.75444 -38.09033 -36.16911 -34.48455 -34.16707 -33.21594 -30.55070 -29.45865 -28.67663 -27.13184 -26.71005 -24.38740 -22.66362 -22.32904 -21.42124 -21.09264 -20.48130 -18.17555 -17.48673 -17.37811 -16.99052 -16.63192 -16.22313 -15.96149 -15.63282 -15.46410 -14.95224 -14.64226 -14.46408 -14.17062 -13.75271 -13.64737 -13.43122 -13.24150 -13.09470 -12.95749 -12.81850 -12.78923 -12.62080 -12.49811 -12.26932 -12.20168 -12.09880 -11.88064 -11.82185 -11.74739 -11.45178 -11.40656 -11.31974 -11.24204 -10.62896 -10.39941 -9.74162 -9.05730 -8.27278 -6.13365 1.43300 1.49953 1.54088 2.17946 2.34786 2.84120 2.99575 3.05778 3.87432 3.89347 3.93138 3.97642 4.08688 4.11717 4.19156 4.33384 4.42372 4.51438 4.60945 4.61917 4.70958 4.74912 4.76726 4.80725 4.83845 4.86290 4.91131 4.92554 5.04148 5.08056 5.08411 5.12075 5.16369 5.23871 5.24796 5.35389 5.36528 5.39522 5.41831 5.46123 5.54448 5.58775 5.67802 6.21927 6.43589 6.74786 7.06445 7.72231 8.18196 8.76384 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.007470 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.252458 B = 3747.239044 C = 4493.401319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.075 3.925 3 H 0.059 0.941 4 C -0.121 4.121 5 C -0.104 4.104 6 H 0.102 0.898 7 C 0.507 3.493 8 O -0.638 6.638 9 N -0.448 5.448 10 C -0.339 4.339 11 H 0.084 0.916 12 C 0.032 3.968 13 N -0.883 5.883 14 Si 0.943 3.057 15 H -0.289 1.289 16 H -0.265 1.265 17 H -0.251 1.251 18 C 0.120 3.880 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.119 4.119 23 C -0.129 4.129 24 C 0.089 3.911 25 H 0.026 0.974 26 C -0.133 4.133 27 O -0.390 6.390 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.271 0.729 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 -0.397 6.059 6.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.018 3.982 3 H 0.077 0.923 4 C -0.159 4.159 5 C -0.125 4.125 6 H 0.120 0.880 7 C 0.298 3.702 8 O -0.527 6.527 9 N -0.166 5.166 10 C -0.466 4.466 11 H 0.102 0.898 12 C -0.173 4.173 13 N -0.518 5.518 14 Si 0.766 3.234 15 H -0.214 1.214 16 H -0.190 1.190 17 H -0.175 1.175 18 C 0.016 3.984 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.158 4.158 23 C -0.167 4.167 24 C 0.031 3.969 25 H 0.044 0.956 26 C -0.190 4.190 27 O -0.311 6.311 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.626 -0.108 6.080 6.114 hybrid contribution 0.388 -0.593 -0.972 1.203 sum 1.014 -0.701 5.109 5.256 Atomic orbital electron populations 1.21698 0.91675 1.02924 1.02595 1.22349 0.95783 0.95919 0.84167 0.92299 1.21938 0.94823 1.00617 0.98557 1.21348 0.94984 0.94880 1.01330 0.88033 1.20741 0.82835 0.90585 0.76066 1.90380 1.58968 1.45563 1.57759 1.43529 1.04373 1.04951 1.63747 1.19064 1.14807 0.97597 1.15135 0.89845 1.26125 0.95439 1.02392 0.93312 1.70052 1.41285 1.35465 1.05039 0.85776 0.79556 0.79273 0.78784 1.21446 1.18987 1.17459 1.21776 0.95240 0.85888 0.95467 1.22463 0.96791 1.00135 0.95939 1.22420 0.97097 0.98551 0.96938 1.22211 0.95688 1.01063 0.95466 1.22317 0.95727 1.00612 0.97119 1.22153 1.03144 0.98608 0.92791 1.22073 0.80867 0.97483 0.96479 0.95621 1.21713 1.02072 1.00781 0.94408 1.87745 1.21373 1.78308 1.43649 0.91337 0.91589 0.90757 0.92972 0.90742 0.91967 0.93243 0.91732 0.94736 0.90938 0.90765 0.89814 0.92003 0.91908 0.92288 0.91256 0.88892 0.91151 0.90013 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.57 71.98 0.69 -3.38 16 2 C 0.08 2.97 2.98 30.63 0.09 3.06 16 3 H 0.06 2.75 5.57 -2.39 -0.01 2.73 16 4 C -0.12 -5.02 4.58 30.68 0.14 -4.88 16 5 C -0.10 -4.74 2.15 -11.42 -0.02 -4.76 16 6 H 0.10 5.00 4.83 -2.38 -0.01 4.99 16 7 C 0.51 25.57 5.37 87.66 0.47 26.04 16 8 O -0.64 -34.86 13.00 -3.05 -0.04 -34.90 16 9 N -0.45 -21.58 2.31 -609.36 -1.41 -22.99 16 10 C -0.34 -15.78 4.86 84.04 0.41 -15.37 16 11 H 0.08 3.79 7.28 -2.91 -0.02 3.77 16 12 C 0.03 1.50 3.22 84.93 0.27 1.77 16 13 N -0.88 -44.76 11.77 21.66 0.25 -44.50 16 14 Si 0.94 36.75 29.01 68.60 1.99 38.74 16 15 H -0.29 -11.50 7.11 99.48 0.71 -10.80 16 16 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 17 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 18 C 0.12 5.29 3.29 45.72 0.15 5.45 16 19 C -0.11 -4.73 6.42 31.70 0.20 -4.53 16 20 C -0.11 -3.46 6.91 31.91 0.22 -3.24 16 21 C -0.11 -3.17 6.83 31.67 0.22 -2.96 16 22 C -0.12 -4.30 6.27 31.32 0.20 -4.11 16 23 C -0.13 -5.16 4.60 30.68 0.14 -5.02 16 24 C 0.09 3.36 3.04 30.63 0.09 3.45 16 25 H 0.03 1.12 7.38 -2.39 -0.02 1.10 16 26 C -0.13 -3.85 9.57 71.98 0.69 -3.16 16 27 O -0.39 -15.22 10.05 -148.98 -1.50 -16.71 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 2.27 8.11 -2.39 -0.02 2.25 16 32 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.27 13.21 8.32 -92.71 -0.77 12.44 16 34 H 0.05 2.39 6.95 -2.39 -0.02 2.38 16 35 H 0.06 3.03 7.03 -2.39 -0.02 3.01 16 36 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.06 2.24 6.94 -2.39 -0.02 2.23 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.09 3.82 5.17 -2.38 -0.01 3.81 16 45 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -57.84 348.66 4.19 -53.65 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.93 Total: 38.33 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 3.96 Total: -11.62 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: -1.15 Total: -67.49 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -1.54 Total: -51.61 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 1.99 Total: 38.74 kcal Total: -57.84 4.19 -53.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245710316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.223 kcal (2) G-P(sol) polarization free energy of solvation -57.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds