Wall clock time and date at job start Tue Mar 31 2020 07:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.42280 * 2 1 4 4 O 1.44431 * 110.36975 * 122.30858 * 2 1 3 5 5 C 1.44424 * 105.27267 * 159.34307 * 4 2 1 6 6 H 1.09000 * 110.46463 * 78.36770 * 5 4 2 7 7 C 1.52997 * 110.37011 * 200.65589 * 5 4 2 8 8 C 1.54472 * 104.80584 * 319.48635 * 5 4 2 9 9 H 1.09001 * 110.51352 * 265.33598 * 8 5 4 10 10 C 1.53003 * 110.51213 * 142.75928 * 8 5 4 11 11 C 1.54479 * 110.37268 * 237.68964 * 2 1 3 12 12 H 1.08996 * 110.51039 * 335.83132 * 11 2 1 13 13 C 1.50698 * 110.62793 * 98.49016 * 11 2 1 14 14 O 1.21288 * 120.00147 * 38.05089 * 13 11 2 15 15 N 1.34776 * 119.99682 * 218.04963 * 13 11 2 16 16 C 1.37095 * 119.99825 * 186.75434 * 15 13 11 17 17 H 1.07998 * 120.00386 * 21.71668 * 16 15 13 18 18 C 1.38953 * 120.00009 * 201.71557 * 16 15 13 19 19 N 1.31405 * 119.99725 * 27.21847 * 18 16 15 20 20 Si 1.86803 * 120.00012 * 207.21566 * 18 16 15 21 21 H 1.48502 * 109.46979 * 60.00361 * 20 18 16 22 22 H 1.48499 * 109.47096 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47121 * 300.00294 * 20 18 16 24 24 C 1.46497 * 120.00460 * 6.75031 * 15 13 11 25 25 C 1.54272 * 110.02898 * 60.14794 * 24 15 13 26 26 C 1.54885 * 104.19445 * 217.10598 * 25 24 15 27 27 C 1.54891 * 102.75250 * 37.94558 * 26 25 24 28 28 C 1.53879 * 110.03274 * 302.98818 * 24 15 13 29 29 H 1.08999 * 109.47022 * 201.89347 * 1 2 3 30 30 H 1.08997 * 109.47082 * 321.89284 * 1 2 3 31 31 H 1.08998 * 109.46578 * 81.88961 * 1 2 3 32 32 H 1.09005 * 109.47166 * 175.38111 * 7 5 4 33 33 H 1.09003 * 109.47326 * 295.37936 * 7 5 4 34 34 H 1.08996 * 109.47594 * 55.38237 * 7 5 4 35 35 H 1.09000 * 109.47069 * 66.40797 * 10 8 5 36 36 H 1.09000 * 109.47151 * 186.40297 * 10 8 5 37 37 H 1.08996 * 109.47458 * 306.40890 * 10 8 5 38 38 H 0.97005 * 120.00122 * 184.98992 * 19 18 16 39 39 H 1.08997 * 110.02081 * 181.59047 * 24 15 13 40 40 H 1.08998 * 110.48869 * 335.78182 * 25 24 15 41 41 H 1.08993 * 110.48351 * 98.42917 * 25 24 15 42 42 H 1.09002 * 110.75923 * 279.62907 * 26 25 24 43 43 H 1.09003 * 110.76019 * 156.25776 * 26 25 24 44 44 H 1.08997 * 110.48882 * 203.37599 * 27 26 25 45 45 H 1.09004 * 110.48927 * 80.73006 * 27 26 25 46 46 H 1.09002 * 110.02674 * 238.56936 * 28 24 15 47 47 H 1.09002 * 110.03334 * 359.97438 * 28 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 8 2.0328 -0.7237 1.1444 5 6 3.3873 -1.0872 0.7996 6 1 4.0540 -0.2336 0.9225 7 6 3.8600 -2.2594 1.6617 8 6 3.3178 -1.5058 -0.6857 9 1 3.1955 -2.5854 -0.7730 10 6 4.5730 -1.0477 -1.4311 11 6 2.0678 -0.7740 -1.2239 12 1 1.3276 -1.4920 -1.5771 13 6 2.4478 0.1776 -2.3289 14 8 2.9719 1.2384 -2.0622 15 7 2.2054 -0.1501 -3.6135 16 6 2.6736 0.6484 -4.6247 17 1 3.5034 1.3160 -4.4455 18 6 2.0806 0.5988 -5.8804 19 7 0.8196 0.2486 -5.9980 20 14 3.0760 1.0301 -7.4011 21 1 4.2329 0.1059 -7.5140 22 1 2.2193 0.8995 -8.6070 23 1 3.5674 2.4272 -7.2913 24 6 1.4416 -1.3597 -3.9294 25 6 0.0325 -1.2722 -3.3075 26 6 -0.2711 -2.7203 -2.8495 27 6 1.1024 -3.2083 -2.3258 28 6 2.1218 -2.5907 -3.3051 29 1 -0.3633 -0.9535 0.3832 30 1 -0.3633 0.8086 0.6342 31 1 -0.3632 0.1450 -1.0174 32 1 4.8510 -2.5745 1.3347 33 1 3.9038 -1.9483 2.7055 34 1 3.1623 -3.0905 1.5592 35 1 5.4393 -1.5891 -1.0509 36 1 4.4572 -1.2496 -2.4960 37 1 4.7169 0.0217 -1.2776 38 1 0.4254 0.1437 -6.8781 39 1 1.3667 -1.4822 -5.0098 40 1 0.0336 -0.5945 -2.4538 41 1 -0.6938 -0.9476 -4.0525 42 1 -0.6027 -3.3299 -3.6902 43 1 -1.0130 -2.7255 -2.0509 44 1 1.1569 -4.2966 -2.3544 45 1 1.2765 -2.8432 -1.3136 46 1 2.3764 -3.3109 -4.0827 47 1 3.0205 -2.2882 -2.7675 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252680551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:53 Heat of formation + Delta-G solvation = -60.438949 kcal Electronic energy + Delta-G solvation = -27430.902547 eV Core-core repulsion = 24000.502800 eV Total energy + Delta-G solvation = -3430.399747 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.86866 -38.30543 -36.63960 -34.22302 -33.38667 -32.01084 -31.40224 -29.28868 -27.94855 -27.11804 -26.94302 -24.68732 -22.91232 -21.70044 -20.82099 -20.17630 -19.79008 -18.16151 -17.16094 -16.09492 -15.76977 -15.41367 -15.10196 -14.58306 -14.37591 -14.19700 -13.91961 -13.69324 -13.28743 -12.99741 -12.54802 -12.38398 -12.18732 -12.09213 -11.94054 -11.76088 -11.52514 -11.40701 -11.35694 -11.01596 -10.97360 -10.79183 -10.63623 -10.59088 -10.45104 -10.37653 -10.19398 -10.15075 -10.02393 -9.95734 -9.56308 -9.17912 -8.82873 -8.24323 -7.64231 -6.39201 -3.83730 3.16970 3.25148 3.28807 3.81029 4.09196 4.19087 4.79172 4.90169 4.91726 5.06605 5.21113 5.24478 5.25985 5.36096 5.47599 5.52682 5.62221 5.70813 5.72493 5.78006 5.82967 5.92266 5.95774 5.99822 6.06513 6.13313 6.14747 6.20951 6.26812 6.27900 6.31104 6.33466 6.41662 6.46524 6.49974 6.54305 6.63285 6.69629 6.81658 6.87875 7.10807 7.26686 7.29342 7.56316 8.14939 8.50503 9.18872 9.44420 10.03557 10.65420 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018497 B = 0.006636 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.374118 B = 4218.102444 C = 4651.955560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.085 3.915 3 H 0.081 0.919 4 O -0.375 6.375 5 C 0.075 3.925 6 H 0.068 0.932 7 C -0.143 4.143 8 C -0.104 4.104 9 H 0.082 0.918 10 C -0.154 4.154 11 C -0.173 4.173 12 H 0.138 0.862 13 C 0.468 3.532 14 O -0.587 6.587 15 N -0.433 5.433 16 C -0.309 4.309 17 H 0.097 0.903 18 C 0.035 3.965 19 N -0.859 5.859 20 Si 0.908 3.092 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.144 3.856 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.142 4.142 28 C -0.160 4.160 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.267 0.733 39 H 0.115 0.885 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 -8.726 7.809 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.027 3.973 3 H 0.099 0.901 4 O -0.295 6.295 5 C 0.018 3.982 6 H 0.086 0.914 7 C -0.201 4.201 8 C -0.123 4.123 9 H 0.100 0.900 10 C -0.211 4.211 11 C -0.193 4.193 12 H 0.155 0.845 13 C 0.256 3.744 14 O -0.472 6.472 15 N -0.150 5.150 16 C -0.436 4.436 17 H 0.115 0.885 18 C -0.169 4.169 19 N -0.498 5.498 20 Si 0.734 3.266 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.039 3.961 25 C -0.173 4.173 26 C -0.165 4.165 27 C -0.179 4.179 28 C -0.198 4.198 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.133 0.867 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.082 -8.192 7.943 11.411 hybrid contribution 0.454 0.143 -1.151 1.246 sum 0.536 -8.050 6.792 10.546 Atomic orbital electron populations 1.21939 0.93728 1.02297 1.02718 1.22886 0.94532 0.96280 0.83578 0.90134 1.89038 1.26905 1.74783 1.38742 1.23004 0.84988 0.96897 0.93334 0.91407 1.21794 1.01053 0.97507 0.99703 1.22455 0.95381 0.99883 0.94548 0.90027 1.22039 0.95502 1.02905 1.00637 1.23741 0.99736 0.99688 0.96169 0.84495 1.19545 0.84488 0.86981 0.83352 1.90487 1.48604 1.25428 1.82712 1.43709 1.47136 1.20247 1.03931 1.19573 1.13682 1.21693 0.88669 0.88504 1.25135 0.94516 0.97739 0.99485 1.70121 1.09349 1.45708 1.24575 0.86289 0.79928 0.79376 0.80962 1.20074 1.21049 1.19818 1.21668 0.88891 0.82967 1.02572 1.22983 0.98521 0.95090 1.00673 1.22528 0.96377 0.97515 1.00086 1.22754 0.95831 0.99583 0.99741 1.23087 0.99587 0.98325 0.98781 0.91815 0.92300 0.90634 0.91411 0.92253 0.91990 0.93368 0.91465 0.90695 0.92307 0.86696 0.91400 0.90317 0.91638 0.92149 0.92232 0.90090 0.92125 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.51 37.16 0.35 -2.04 16 2 C 0.08 1.56 3.44 -25.95 -0.09 1.47 16 3 H 0.08 1.68 7.07 -51.93 -0.37 1.31 16 4 O -0.37 -6.50 11.03 -35.23 -0.39 -6.88 16 5 C 0.08 1.18 3.47 -25.96 -0.09 1.09 16 6 H 0.07 1.10 7.81 -51.93 -0.41 0.70 16 7 C -0.14 -1.73 9.52 37.16 0.35 -1.38 16 8 C -0.10 -1.70 1.89 -89.05 -0.17 -1.87 16 9 H 0.08 1.21 6.20 -51.93 -0.32 0.89 16 10 C -0.15 -2.68 7.74 37.16 0.29 -2.39 16 11 C -0.17 -3.23 0.91 -90.20 -0.08 -3.31 16 12 H 0.14 2.40 0.93 -51.93 -0.05 2.35 16 13 C 0.47 10.94 3.79 -10.99 -0.04 10.90 16 14 O -0.59 -15.82 14.35 5.55 0.08 -15.74 16 15 N -0.43 -10.51 2.57 -106.54 -0.27 -10.78 16 16 C -0.31 -8.32 9.17 -14.93 -0.14 -8.46 16 17 H 0.10 2.77 7.57 -52.49 -0.40 2.37 16 18 C 0.04 0.90 4.71 -17.47 -0.08 0.82 16 19 N -0.86 -22.00 11.18 55.50 0.62 -21.38 16 20 Si 0.91 20.11 29.63 -169.99 -5.04 15.07 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.14 3.03 2.39 -66.81 -0.16 2.88 16 25 C -0.13 -2.56 5.80 -25.07 -0.15 -2.71 16 26 C -0.13 -1.90 6.79 -24.74 -0.17 -2.07 16 27 C -0.14 -2.07 5.75 -25.07 -0.14 -2.22 16 28 C -0.16 -2.77 5.61 -25.61 -0.14 -2.92 16 29 H 0.06 0.92 8.13 -51.93 -0.42 0.49 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.27 5.53 -51.93 -0.29 0.98 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 37 H 0.07 1.49 6.60 -51.93 -0.34 1.15 16 38 H 0.27 6.49 8.32 -40.82 -0.34 6.15 16 39 H 0.12 2.69 5.59 -51.93 -0.29 2.40 16 40 H 0.07 1.33 3.24 -51.93 -0.17 1.16 16 41 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.20 4.61 -51.93 -0.24 0.96 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.08 1.42 2.84 -51.93 -0.15 1.27 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -28.86 332.36 -7.56 -36.42 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.11 Total: 10.49 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -0.46 Total: -12.21 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.35 Total: -32.16 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.31 Total: -22.62 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.04 Total: 15.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.86 -7.56 -36.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252680551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.018 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds