Wall clock time and date at job start Tue Mar 31 2020 07:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.42280 * 2 1 4 4 O 1.44431 * 110.36975 * 122.30858 * 2 1 3 5 5 C 1.44424 * 105.27267 * 159.34307 * 4 2 1 6 6 H 1.09000 * 110.46463 * 78.36770 * 5 4 2 7 7 C 1.52997 * 110.37011 * 200.65589 * 5 4 2 8 8 C 1.54472 * 104.80584 * 319.48635 * 5 4 2 9 9 H 1.09001 * 110.51352 * 265.33598 * 8 5 4 10 10 C 1.53003 * 110.51213 * 142.75928 * 8 5 4 11 11 C 1.54479 * 110.37268 * 237.68964 * 2 1 3 12 12 H 1.08996 * 110.51039 * 335.83132 * 11 2 1 13 13 C 1.50698 * 110.62793 * 98.49016 * 11 2 1 14 14 O 1.21288 * 120.00147 * 38.05089 * 13 11 2 15 15 N 1.34776 * 119.99682 * 218.04963 * 13 11 2 16 16 C 1.37095 * 119.99825 * 186.75434 * 15 13 11 17 17 H 1.07998 * 120.00386 * 21.71668 * 16 15 13 18 18 C 1.38953 * 120.00009 * 201.71557 * 16 15 13 19 19 N 1.31405 * 119.99725 * 27.21847 * 18 16 15 20 20 Si 1.86803 * 120.00012 * 207.21566 * 18 16 15 21 21 H 1.48502 * 109.46979 * 60.00361 * 20 18 16 22 22 H 1.48499 * 109.47096 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47121 * 300.00294 * 20 18 16 24 24 C 1.46497 * 120.00460 * 6.75031 * 15 13 11 25 25 C 1.54272 * 110.02898 * 60.14794 * 24 15 13 26 26 C 1.54885 * 104.19445 * 217.10598 * 25 24 15 27 27 C 1.54891 * 102.75250 * 37.94558 * 26 25 24 28 28 C 1.53879 * 110.03274 * 302.98818 * 24 15 13 29 29 H 1.08999 * 109.47022 * 201.89347 * 1 2 3 30 30 H 1.08997 * 109.47082 * 321.89284 * 1 2 3 31 31 H 1.08998 * 109.46578 * 81.88961 * 1 2 3 32 32 H 1.09005 * 109.47166 * 175.38111 * 7 5 4 33 33 H 1.09003 * 109.47326 * 295.37936 * 7 5 4 34 34 H 1.08996 * 109.47594 * 55.38237 * 7 5 4 35 35 H 1.09000 * 109.47069 * 66.40797 * 10 8 5 36 36 H 1.09000 * 109.47151 * 186.40297 * 10 8 5 37 37 H 1.08996 * 109.47458 * 306.40890 * 10 8 5 38 38 H 0.97005 * 120.00122 * 184.98992 * 19 18 16 39 39 H 1.08997 * 110.02081 * 181.59047 * 24 15 13 40 40 H 1.08998 * 110.48869 * 335.78182 * 25 24 15 41 41 H 1.08993 * 110.48351 * 98.42917 * 25 24 15 42 42 H 1.09002 * 110.75923 * 279.62907 * 26 25 24 43 43 H 1.09003 * 110.76019 * 156.25776 * 26 25 24 44 44 H 1.08997 * 110.48882 * 203.37599 * 27 26 25 45 45 H 1.09004 * 110.48927 * 80.73006 * 27 26 25 46 46 H 1.09002 * 110.02674 * 238.56936 * 28 24 15 47 47 H 1.09002 * 110.03334 * 359.97438 * 28 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 8 2.0328 -0.7237 1.1444 5 6 3.3873 -1.0872 0.7996 6 1 4.0540 -0.2336 0.9225 7 6 3.8600 -2.2594 1.6617 8 6 3.3178 -1.5058 -0.6857 9 1 3.1955 -2.5854 -0.7730 10 6 4.5730 -1.0477 -1.4311 11 6 2.0678 -0.7740 -1.2239 12 1 1.3276 -1.4920 -1.5771 13 6 2.4478 0.1776 -2.3289 14 8 2.9719 1.2384 -2.0622 15 7 2.2054 -0.1501 -3.6135 16 6 2.6736 0.6484 -4.6247 17 1 3.5034 1.3160 -4.4455 18 6 2.0806 0.5988 -5.8804 19 7 0.8196 0.2486 -5.9980 20 14 3.0760 1.0301 -7.4011 21 1 4.2329 0.1059 -7.5140 22 1 2.2193 0.8995 -8.6070 23 1 3.5674 2.4272 -7.2913 24 6 1.4416 -1.3597 -3.9294 25 6 0.0325 -1.2722 -3.3075 26 6 -0.2711 -2.7203 -2.8495 27 6 1.1024 -3.2083 -2.3258 28 6 2.1218 -2.5907 -3.3051 29 1 -0.3633 -0.9535 0.3832 30 1 -0.3633 0.8086 0.6342 31 1 -0.3632 0.1450 -1.0174 32 1 4.8510 -2.5745 1.3347 33 1 3.9038 -1.9483 2.7055 34 1 3.1623 -3.0905 1.5592 35 1 5.4393 -1.5891 -1.0509 36 1 4.4572 -1.2496 -2.4960 37 1 4.7169 0.0217 -1.2776 38 1 0.4254 0.1437 -6.8781 39 1 1.3667 -1.4822 -5.0098 40 1 0.0336 -0.5945 -2.4538 41 1 -0.6938 -0.9476 -4.0525 42 1 -0.6027 -3.3299 -3.6902 43 1 -1.0130 -2.7255 -2.0509 44 1 1.1569 -4.2966 -2.3544 45 1 1.2765 -2.8432 -1.3136 46 1 2.3764 -3.3109 -4.0827 47 1 3.0205 -2.2882 -2.7675 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252680551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:52 Heat of formation + Delta-G solvation = -77.468700 kcal Electronic energy + Delta-G solvation = -27431.641013 eV Core-core repulsion = 24000.502800 eV Total energy + Delta-G solvation = -3431.138213 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.40586 -39.77980 -38.34901 -36.01647 -34.74553 -33.45507 -33.29180 -30.47360 -29.29879 -28.69669 -28.44788 -26.48132 -24.25401 -23.20094 -22.22500 -21.47524 -21.33697 -19.87637 -18.86554 -17.73870 -17.25787 -16.85346 -16.65844 -16.25210 -15.93204 -15.72742 -15.55377 -15.19381 -14.73995 -14.36304 -13.92743 -13.87775 -13.65045 -13.52470 -13.25180 -13.15726 -13.08689 -12.86363 -12.71234 -12.61898 -12.53133 -12.29737 -12.13821 -12.00950 -11.88784 -11.83556 -11.81161 -11.58048 -11.47378 -11.45914 -10.92183 -10.69301 -10.59475 -10.11531 -9.55505 -8.37228 -5.89409 1.35217 1.39952 1.49034 2.01949 2.28346 2.79365 3.00338 3.11532 3.58659 3.72030 3.81805 3.87395 3.93586 3.94695 4.17170 4.28456 4.35320 4.38280 4.40523 4.49275 4.54046 4.57375 4.66356 4.71317 4.77308 4.80468 4.87026 4.89307 4.96343 4.97919 5.04152 5.05575 5.11627 5.17211 5.18217 5.26330 5.33371 5.34858 5.41642 5.47014 5.48165 5.58915 5.70608 5.90432 6.15082 6.56329 7.22117 7.55869 8.15157 8.65460 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018497 B = 0.006636 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.374118 B = 4218.102444 C = 4651.955560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.043 0.957 4 O -0.373 6.373 5 C 0.070 3.930 6 H 0.051 0.949 7 C -0.136 4.136 8 C -0.099 4.099 9 H 0.112 0.888 10 C -0.147 4.147 11 C -0.165 4.165 12 H 0.156 0.844 13 C 0.462 3.538 14 O -0.637 6.637 15 N -0.443 5.443 16 C -0.348 4.348 17 H 0.064 0.936 18 C 0.008 3.992 19 N -0.870 5.870 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.271 1.271 23 H -0.281 1.281 24 C 0.137 3.863 25 C -0.136 4.136 26 C -0.116 4.116 27 C -0.132 4.132 28 C -0.158 4.158 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.037 0.963 38 H 0.273 0.727 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 -12.137 8.811 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.061 0.939 4 O -0.292 6.292 5 C 0.013 3.987 6 H 0.069 0.931 7 C -0.193 4.193 8 C -0.118 4.118 9 H 0.130 0.870 10 C -0.204 4.204 11 C -0.185 4.185 12 H 0.172 0.828 13 C 0.252 3.748 14 O -0.526 6.526 15 N -0.159 5.159 16 C -0.476 4.476 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.507 5.507 20 Si 0.793 3.207 21 H -0.194 1.194 22 H -0.195 1.195 23 H -0.207 1.207 24 C 0.032 3.968 25 C -0.174 4.174 26 C -0.154 4.154 27 C -0.169 4.169 28 C -0.196 4.196 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.115 0.885 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.495 -11.637 8.939 14.683 hybrid contribution 0.641 1.310 -1.504 2.095 sum 0.147 -10.327 7.435 12.726 Atomic orbital electron populations 1.21910 0.91736 1.04182 1.02394 1.22779 0.96132 0.94554 0.84025 0.93944 1.89037 1.27742 1.74320 1.38135 1.23169 0.84038 0.97986 0.93510 0.93113 1.21800 1.02257 0.95927 0.99341 1.22538 0.93444 1.01090 0.94764 0.86990 1.21935 0.97819 1.01057 0.99604 1.23755 1.01412 0.98931 0.94410 0.82770 1.20331 0.83196 0.87115 0.84114 1.90446 1.50675 1.27886 1.83574 1.43923 1.47236 1.20974 1.03802 1.19458 1.14094 1.23305 0.90707 0.91833 1.25792 0.95260 0.97307 1.01195 1.70170 1.09879 1.45286 1.25409 0.85390 0.78840 0.78587 0.77926 1.19368 1.19546 1.20660 1.21813 0.90213 0.83226 1.01511 1.22930 0.96680 0.98208 0.99592 1.22512 0.97437 0.94107 1.01348 1.22713 0.94030 1.01600 0.98570 1.23047 0.99958 0.96822 0.99792 0.89261 0.91260 0.91845 0.89405 0.91393 0.90681 0.89802 0.93728 0.94360 0.91759 0.89539 0.92290 0.92701 0.90420 0.89534 0.88542 0.89812 0.90922 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.51 71.98 0.68 -3.81 16 2 C 0.08 3.08 3.44 31.10 0.11 3.18 16 3 H 0.04 1.89 7.07 -2.39 -0.02 1.87 16 4 O -0.37 -12.31 11.03 -148.98 -1.64 -13.95 16 5 C 0.07 2.08 3.47 31.09 0.11 2.19 16 6 H 0.05 1.66 7.81 -2.39 -0.02 1.64 16 7 C -0.14 -2.76 9.52 71.98 0.68 -2.08 16 8 C -0.10 -3.12 1.89 -9.78 -0.02 -3.14 16 9 H 0.11 2.87 6.20 -2.39 -0.01 2.85 16 10 C -0.15 -5.15 7.74 71.98 0.56 -4.59 16 11 C -0.16 -6.14 0.91 -10.52 -0.01 -6.15 16 12 H 0.16 5.16 0.93 -2.39 0.00 5.16 16 13 C 0.46 22.74 3.79 87.66 0.33 23.07 16 14 O -0.64 -37.06 14.35 -3.05 -0.04 -37.11 16 15 N -0.44 -22.53 2.57 -609.38 -1.57 -24.09 16 16 C -0.35 -19.90 9.17 84.04 0.77 -19.13 16 17 H 0.06 3.96 7.57 -2.91 -0.02 3.93 16 18 C 0.01 0.42 4.71 84.93 0.40 0.82 16 19 N -0.87 -45.65 11.18 21.66 0.24 -45.40 16 20 Si 0.97 42.33 29.63 68.60 2.03 44.36 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 C 0.14 5.81 2.39 45.72 0.11 5.92 16 25 C -0.14 -5.13 5.80 31.67 0.18 -4.95 16 26 C -0.12 -3.08 6.79 31.88 0.22 -2.86 16 27 C -0.13 -3.30 5.75 31.67 0.18 -3.12 16 28 C -0.16 -5.21 5.61 31.32 0.18 -5.03 16 29 H 0.09 2.29 8.13 -2.39 -0.02 2.27 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 2.12 5.53 -2.39 -0.01 2.10 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.04 1.75 5.97 -2.39 -0.01 1.74 16 37 H 0.04 1.60 6.60 -2.39 -0.02 1.59 16 38 H 0.27 13.38 8.32 -92.70 -0.77 12.61 16 39 H 0.09 4.15 5.59 -2.39 -0.01 4.14 16 40 H 0.06 2.32 3.24 -2.39 -0.01 2.32 16 41 H 0.05 2.29 8.10 -2.39 -0.02 2.27 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.08 2.08 4.61 -2.38 -0.01 2.07 16 46 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.07 2.54 2.84 -2.39 -0.01 2.53 16 Total: -1.00 -68.31 332.36 4.48 -63.82 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.98 Total: 32.04 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 4.48 Total: -19.67 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -1.33 Total: -69.50 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -1.69 Total: -51.06 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -68.31 4.48 -63.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252680551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.645 kcal (2) G-P(sol) polarization free energy of solvation -68.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds