Wall clock time and date at job start Tue Mar 31 2020 07:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47319 * 2 1 4 4 C 1.52997 * 109.47298 * 120.00422 * 2 1 3 5 5 O 1.42893 * 109.47084 * 174.99812 * 4 2 1 6 6 C 1.42907 * 114.00216 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47395 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46907 * 185.00215 * 7 6 5 9 9 N 1.46897 * 109.46797 * 65.00624 * 7 6 5 10 10 C 1.46904 * 110.99939 * 154.99794 * 9 7 6 11 11 H 1.08998 * 109.47196 * 324.99618 * 10 9 7 12 12 C 1.52997 * 109.46946 * 85.00277 * 10 9 7 13 13 C 1.53004 * 109.46803 * 204.99910 * 10 9 7 14 14 C 1.50701 * 109.47211 * 65.00453 * 13 10 9 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 10 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 10 17 17 N 1.31523 * 119.99908 * 179.72112 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 359.71709 * 16 14 13 19 19 H 1.48500 * 109.47210 * 90.00069 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00300 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00390 * 18 16 14 22 22 C 1.50700 * 109.47346 * 305.00509 * 7 6 5 23 23 C 1.34510 * 125.78973 * 260.00269 * 22 7 6 24 24 C 1.41386 * 106.84004 * 180.02562 * 23 22 7 25 25 C 1.34509 * 106.84072 * 359.97438 * 24 23 22 26 26 O 1.34304 * 125.78674 * 79.69202 * 22 7 6 27 27 H 1.08998 * 109.47349 * 299.99937 * 1 2 3 28 28 H 1.09006 * 109.47381 * 59.99461 * 1 2 3 29 29 H 1.08994 * 109.47369 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46942 * 240.00415 * 2 1 3 31 31 H 1.08998 * 109.46859 * 59.99763 * 3 2 1 32 32 H 1.08991 * 109.47188 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46918 * 300.00834 * 3 2 1 34 34 H 1.08995 * 109.47207 * 54.99834 * 4 2 1 35 35 H 1.09002 * 109.46831 * 294.99598 * 4 2 1 36 36 H 1.09006 * 109.46246 * 59.99828 * 6 5 4 37 37 H 1.09002 * 109.47029 * 300.01021 * 6 5 4 38 38 H 1.00902 * 111.00127 * 278.94896 * 9 7 6 39 39 H 1.09004 * 109.46837 * 299.99539 * 12 10 9 40 40 H 1.08998 * 109.47711 * 59.99657 * 12 10 9 41 41 H 1.09000 * 109.46991 * 180.02562 * 12 10 9 42 42 H 1.09000 * 109.47211 * 304.99480 * 13 10 9 43 43 H 1.09007 * 109.46376 * 185.00022 * 13 10 9 44 44 H 0.96995 * 120.00181 * 179.97438 * 17 16 14 45 45 H 1.08007 * 126.57879 * 0.02868 * 23 22 7 46 46 H 1.07995 * 126.57702 * 179.97438 * 24 23 22 47 47 H 1.08000 * 125.78865 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 3.4641 -0.8239 1.1918 6 6 4.0451 -1.4848 2.3179 7 6 5.5650 -1.5375 2.1500 8 1 6.0003 -2.1184 2.9632 9 7 6.1082 -0.1729 2.1776 10 6 7.5122 -0.1739 2.6098 11 1 7.6623 -0.9545 3.3556 12 6 8.4166 -0.4391 1.4046 13 6 7.8594 1.1863 3.2184 14 6 7.0553 1.3940 4.4759 15 1 6.3654 0.6321 4.8077 16 6 7.1960 2.5591 5.1995 17 7 6.4902 2.7427 6.2940 18 14 8.3889 3.8769 4.6254 19 1 7.6865 4.8187 3.7171 20 1 8.9101 4.6192 5.8013 21 1 9.5185 3.2406 3.9013 22 6 5.9027 -2.1862 0.8324 23 6 6.2830 -3.4647 0.6596 24 6 6.4975 -3.6446 -0.7263 25 6 6.2348 -2.4653 -1.3175 26 8 5.8694 -1.5872 -0.3692 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6054 -1.7198 1.2950 35 1 1.7517 -0.1584 2.1369 36 1 3.6520 -2.4992 2.3862 37 1 3.7983 -0.9374 3.2276 38 1 6.0068 0.2749 1.2791 39 1 8.1692 -1.4082 0.9710 40 1 8.2665 0.3415 0.6588 41 1 9.4583 -0.4403 1.7253 42 1 7.6254 1.9748 2.5030 43 1 8.9224 1.2165 3.4576 44 1 6.5894 3.5622 6.8033 45 1 6.4018 -4.2108 1.4315 46 1 6.8118 -4.5543 -1.2161 47 1 6.3017 -2.2606 -2.3758 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278899688.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:59 Heat of formation + Delta-G solvation = -45.805894 kcal Electronic energy + Delta-G solvation = -25063.212934 eV Core-core repulsion = 21633.447724 eV Total energy + Delta-G solvation = -3429.765210 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.39604 -38.32143 -36.91581 -34.95125 -33.11211 -32.67707 -31.67897 -28.71355 -27.96222 -27.20242 -27.01436 -25.46411 -22.92748 -22.25065 -21.52640 -20.23732 -19.94386 -19.65374 -17.45491 -16.53505 -16.47362 -16.00964 -15.74893 -15.21177 -14.75107 -14.51214 -14.02078 -13.98641 -13.44927 -13.15647 -12.86879 -12.67658 -12.64013 -12.58573 -12.31902 -12.16606 -12.08649 -12.03129 -11.71410 -11.60867 -11.43891 -11.11557 -10.91966 -10.78902 -10.69464 -10.48534 -10.11118 -9.82240 -9.69660 -9.54500 -9.29941 -9.01618 -8.38404 -8.27645 -7.72778 -5.87523 -3.80841 1.95327 2.76957 3.17975 3.40142 3.47042 3.50028 3.85347 4.58424 4.64968 4.79198 4.88818 4.93388 5.13538 5.17445 5.19630 5.38725 5.46604 5.48702 5.53079 5.56920 5.63444 5.71932 5.73419 5.83626 5.86330 5.88652 5.90711 5.96236 5.98431 6.01431 6.07232 6.09063 6.27800 6.33430 6.38444 6.50158 6.55476 6.63248 6.84084 7.21125 7.24990 7.36831 7.48011 7.80705 7.93320 8.09444 8.75406 9.22869 9.76218 11.26567 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.005285 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.117042 B = 5296.410077 C = 6969.898651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.144 4.144 4 C 0.068 3.932 5 O -0.372 6.372 6 C 0.075 3.925 7 C 0.170 3.830 8 H 0.115 0.885 9 N -0.644 5.644 10 C 0.097 3.903 11 H 0.070 0.930 12 C -0.183 4.183 13 C -0.004 4.004 14 C -0.487 4.487 15 H 0.076 0.924 16 C 0.061 3.939 17 N -0.910 5.910 18 Si 0.874 3.126 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.269 1.269 22 C -0.005 4.005 23 C -0.229 4.229 24 C -0.215 4.215 25 C -0.053 4.053 26 O -0.157 6.157 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.347 0.653 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.012 0.988 43 H 0.017 0.983 44 H 0.259 0.741 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.635 -11.221 -14.779 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.009 4.009 5 O -0.291 6.291 6 C -0.002 4.002 7 C 0.059 3.941 8 H 0.133 0.867 9 N -0.274 5.274 10 C -0.012 4.012 11 H 0.089 0.911 12 C -0.242 4.242 13 C -0.041 4.041 14 C -0.525 4.525 15 H 0.094 0.906 16 C -0.138 4.138 17 N -0.551 5.551 18 Si 0.702 3.298 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.194 1.194 22 C -0.059 4.059 23 C -0.249 4.249 24 C -0.234 4.234 25 C -0.121 4.121 26 O -0.052 6.052 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.166 0.834 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.035 0.965 44 H 0.068 0.932 45 H 0.160 0.840 46 H 0.158 0.842 47 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.882 -10.539 -14.189 18.968 hybrid contribution 0.980 -0.036 -0.951 1.366 sum -5.902 -10.575 -15.141 19.388 Atomic orbital electron populations 1.21788 0.94820 1.01576 1.02099 1.21044 0.94949 0.97207 0.97836 1.21768 1.02518 0.94724 1.01071 1.22489 0.81976 0.98409 0.98031 1.87912 1.19121 1.79168 1.42925 1.22614 0.91717 0.95701 0.90211 1.20586 0.94253 0.91081 0.88209 0.86701 1.60549 1.19282 1.12767 1.34771 1.21681 0.84726 1.00680 0.94138 0.91133 1.22636 1.01099 1.00545 0.99904 1.19605 0.96226 0.91638 0.96665 1.21022 1.22500 1.03632 1.05358 0.90554 1.24997 0.95782 0.98049 0.95015 1.69912 1.41766 1.26626 1.16755 0.86879 0.82282 0.82517 0.78091 1.20591 1.21764 1.19362 1.23612 1.02334 0.92772 0.87131 1.21554 1.09708 0.96759 0.96844 1.21712 1.08258 0.99068 0.94386 1.23913 1.05166 0.88868 0.94148 1.84055 1.66666 1.39471 1.14968 0.92452 0.92308 0.92857 0.90888 0.92747 0.91340 0.93362 0.94251 0.93240 0.93730 0.90911 0.83372 0.93638 0.93145 0.92662 0.96995 0.96492 0.93151 0.84034 0.84166 0.78862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 2 C -0.09 -1.05 3.16 -90.62 -0.29 -1.34 16 3 C -0.14 -1.78 9.09 37.16 0.34 -1.44 16 4 C 0.07 0.87 5.32 37.16 0.20 1.06 16 5 O -0.37 -5.68 9.19 -35.23 -0.32 -6.01 16 6 C 0.07 1.11 5.76 37.16 0.21 1.32 16 7 C 0.17 2.65 2.85 -68.87 -0.20 2.45 16 8 H 0.12 1.70 7.42 -51.93 -0.39 1.32 16 9 N -0.64 -12.00 5.71 -100.95 -0.58 -12.58 16 10 C 0.10 1.89 2.53 -67.71 -0.17 1.72 16 11 H 0.07 1.39 7.43 -51.93 -0.39 1.00 16 12 C -0.18 -3.08 8.92 37.16 0.33 -2.75 16 13 C 0.00 -0.09 3.72 -27.88 -0.10 -0.19 16 14 C -0.49 -13.74 9.39 -34.44 -0.32 -14.06 16 15 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 16 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 17 N -0.91 -28.37 13.96 55.43 0.77 -27.60 16 18 Si 0.87 22.18 27.46 -169.99 -4.67 17.51 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.27 -6.55 6.55 56.52 0.37 -6.18 16 22 C -0.01 -0.08 3.42 -35.63 -0.12 -0.20 16 23 C -0.23 -3.08 10.76 -39.70 -0.43 -3.51 16 24 C -0.21 -2.63 10.91 -39.70 -0.43 -3.06 16 25 C -0.05 -0.65 12.09 29.41 0.36 -0.30 16 26 O -0.16 -2.37 9.95 5.69 0.06 -2.31 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.35 6.52 7.78 -39.29 -0.31 6.21 16 39 H 0.04 0.73 6.15 -51.93 -0.32 0.41 16 40 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.01 0.29 7.56 -51.93 -0.39 -0.11 16 43 H 0.02 0.41 7.21 -51.93 -0.37 0.03 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 46 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 47 H 0.19 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -31.65 379.16 -7.90 -39.55 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.50 Total: 5.32 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -0.38 Total: -19.60 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.20 Total: -40.18 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.27 Total: -8.32 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.65 -7.90 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278899688.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.255 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds