Wall clock time and date at job start Tue Mar 31 2020 07:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47319 * 2 1 4 4 C 1.52997 * 109.47298 * 120.00422 * 2 1 3 5 5 O 1.42893 * 109.47084 * 174.99812 * 4 2 1 6 6 C 1.42907 * 114.00216 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47395 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46907 * 185.00215 * 7 6 5 9 9 N 1.46897 * 109.46797 * 65.00624 * 7 6 5 10 10 C 1.46904 * 110.99939 * 154.99794 * 9 7 6 11 11 H 1.08998 * 109.47196 * 324.99618 * 10 9 7 12 12 C 1.52997 * 109.46946 * 85.00277 * 10 9 7 13 13 C 1.53004 * 109.46803 * 204.99910 * 10 9 7 14 14 C 1.50701 * 109.47211 * 65.00453 * 13 10 9 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 10 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 10 17 17 N 1.31523 * 119.99908 * 179.72112 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 359.71709 * 16 14 13 19 19 H 1.48500 * 109.47210 * 90.00069 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00300 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00390 * 18 16 14 22 22 C 1.50700 * 109.47346 * 305.00509 * 7 6 5 23 23 C 1.34510 * 125.78973 * 260.00269 * 22 7 6 24 24 C 1.41386 * 106.84004 * 180.02562 * 23 22 7 25 25 C 1.34509 * 106.84072 * 359.97438 * 24 23 22 26 26 O 1.34304 * 125.78674 * 79.69202 * 22 7 6 27 27 H 1.08998 * 109.47349 * 299.99937 * 1 2 3 28 28 H 1.09006 * 109.47381 * 59.99461 * 1 2 3 29 29 H 1.08994 * 109.47369 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46942 * 240.00415 * 2 1 3 31 31 H 1.08998 * 109.46859 * 59.99763 * 3 2 1 32 32 H 1.08991 * 109.47188 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46918 * 300.00834 * 3 2 1 34 34 H 1.08995 * 109.47207 * 54.99834 * 4 2 1 35 35 H 1.09002 * 109.46831 * 294.99598 * 4 2 1 36 36 H 1.09006 * 109.46246 * 59.99828 * 6 5 4 37 37 H 1.09002 * 109.47029 * 300.01021 * 6 5 4 38 38 H 1.00902 * 111.00127 * 278.94896 * 9 7 6 39 39 H 1.09004 * 109.46837 * 299.99539 * 12 10 9 40 40 H 1.08998 * 109.47711 * 59.99657 * 12 10 9 41 41 H 1.09000 * 109.46991 * 180.02562 * 12 10 9 42 42 H 1.09000 * 109.47211 * 304.99480 * 13 10 9 43 43 H 1.09007 * 109.46376 * 185.00022 * 13 10 9 44 44 H 0.96995 * 120.00181 * 179.97438 * 17 16 14 45 45 H 1.08007 * 126.57879 * 0.02868 * 23 22 7 46 46 H 1.07995 * 126.57702 * 179.97438 * 24 23 22 47 47 H 1.08000 * 125.78865 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 3.4641 -0.8239 1.1918 6 6 4.0451 -1.4848 2.3179 7 6 5.5650 -1.5375 2.1500 8 1 6.0003 -2.1184 2.9632 9 7 6.1082 -0.1729 2.1776 10 6 7.5122 -0.1739 2.6098 11 1 7.6623 -0.9545 3.3556 12 6 8.4166 -0.4391 1.4046 13 6 7.8594 1.1863 3.2184 14 6 7.0553 1.3940 4.4759 15 1 6.3654 0.6321 4.8077 16 6 7.1960 2.5591 5.1995 17 7 6.4902 2.7427 6.2940 18 14 8.3889 3.8769 4.6254 19 1 7.6865 4.8187 3.7171 20 1 8.9101 4.6192 5.8013 21 1 9.5185 3.2406 3.9013 22 6 5.9027 -2.1862 0.8324 23 6 6.2830 -3.4647 0.6596 24 6 6.4975 -3.6446 -0.7263 25 6 6.2348 -2.4653 -1.3175 26 8 5.8694 -1.5872 -0.3692 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6054 -1.7198 1.2950 35 1 1.7517 -0.1584 2.1369 36 1 3.6520 -2.4992 2.3862 37 1 3.7983 -0.9374 3.2276 38 1 6.0068 0.2749 1.2791 39 1 8.1692 -1.4082 0.9710 40 1 8.2665 0.3415 0.6588 41 1 9.4583 -0.4403 1.7253 42 1 7.6254 1.9748 2.5030 43 1 8.9224 1.2165 3.4576 44 1 6.5894 3.5622 6.8033 45 1 6.4018 -4.2108 1.4315 46 1 6.8118 -4.5543 -1.2161 47 1 6.3017 -2.2606 -2.3758 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278899688.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:59 Heat of formation + Delta-G solvation = -65.365361 kcal Electronic energy + Delta-G solvation = -25064.061096 eV Core-core repulsion = 21633.447724 eV Total energy + Delta-G solvation = -3430.613372 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.42045 -39.49245 -38.27902 -36.05828 -34.83873 -33.88166 -33.27837 -30.12981 -29.53361 -28.38491 -27.99163 -26.50415 -24.72537 -23.52240 -22.59876 -21.36975 -21.20585 -20.92225 -18.78448 -18.47390 -17.61009 -17.14013 -16.83313 -16.45557 -16.23935 -15.80451 -15.59663 -15.10242 -14.88157 -14.50807 -14.20632 -13.98078 -13.75803 -13.65153 -13.60441 -13.54180 -13.38414 -13.20196 -13.03378 -12.90982 -12.62895 -12.51425 -12.50390 -11.93929 -11.85876 -11.75509 -11.67108 -11.46685 -11.41411 -11.15214 -10.71155 -10.64666 -10.44433 -9.35199 -9.09543 -8.14637 -6.12370 0.93920 1.39396 1.39645 1.50790 1.80043 2.18034 2.44551 2.77479 3.17137 3.34991 3.76119 3.93884 3.99473 4.08109 4.17582 4.22643 4.25582 4.33986 4.41649 4.47405 4.49455 4.54635 4.62485 4.68028 4.72117 4.79468 4.84619 4.90998 5.00074 5.01777 5.06575 5.07133 5.11454 5.20108 5.22066 5.28549 5.29322 5.41955 5.47147 5.50154 5.70026 5.78524 6.19113 6.31974 6.43491 6.53044 6.63079 6.94554 7.47976 9.02541 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.005285 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.117042 B = 5296.410077 C = 6969.898651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.141 4.141 4 C 0.062 3.938 5 O -0.387 6.387 6 C 0.078 3.922 7 C 0.172 3.828 8 H 0.117 0.883 9 N -0.664 5.664 10 C 0.104 3.896 11 H 0.064 0.936 12 C -0.168 4.168 13 C -0.001 4.001 14 C -0.485 4.485 15 H 0.039 0.961 16 C -0.002 4.002 17 N -0.958 5.958 18 Si 0.941 3.059 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.248 1.248 22 C -0.024 4.024 23 C -0.228 4.228 24 C -0.221 4.221 25 C -0.053 4.053 26 O -0.178 6.178 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.343 0.657 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.009 0.991 43 H 0.021 0.979 44 H 0.260 0.740 45 H 0.154 0.846 46 H 0.166 0.834 47 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.997 -12.146 -17.264 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C -0.199 4.199 4 C -0.014 4.014 5 O -0.306 6.306 6 C 0.001 3.999 7 C 0.061 3.939 8 H 0.134 0.866 9 N -0.293 5.293 10 C -0.006 4.006 11 H 0.083 0.917 12 C -0.227 4.227 13 C -0.039 4.039 14 C -0.523 4.523 15 H 0.057 0.943 16 C -0.197 4.197 17 N -0.601 5.601 18 Si 0.767 3.233 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.172 1.172 22 C -0.077 4.077 23 C -0.248 4.248 24 C -0.240 4.240 25 C -0.120 4.120 26 O -0.073 6.073 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.163 0.837 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.028 0.972 43 H 0.039 0.961 44 H 0.068 0.932 45 H 0.172 0.828 46 H 0.183 0.817 47 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.241 -11.491 -16.688 21.201 hybrid contribution 0.696 0.164 -0.189 0.739 sum -5.545 -11.327 -16.876 21.068 Atomic orbital electron populations 1.21753 0.92770 1.02556 1.02675 1.21048 0.96550 0.96076 0.96973 1.21737 1.00784 0.95818 1.01521 1.22668 0.80947 0.99382 0.98431 1.87898 1.20505 1.79412 1.42824 1.22552 0.91668 0.96476 0.89236 1.20489 0.94383 0.89572 0.89416 0.86551 1.60429 1.18896 1.15207 1.34783 1.21452 0.86096 0.97887 0.95145 0.91728 1.22449 1.00706 1.01093 0.98405 1.19558 0.95492 0.94195 0.94657 1.21282 1.21742 1.02494 1.06799 0.94258 1.25889 0.97896 1.00763 0.95152 1.70073 1.44025 1.27543 1.18430 0.85792 0.80389 0.79407 0.77759 1.20156 1.21510 1.17217 1.23260 1.04425 0.93280 0.86717 1.21846 1.08476 0.96380 0.98074 1.22039 1.08084 1.00080 0.93763 1.24669 1.03721 0.88538 0.95114 1.84038 1.67277 1.40585 1.15442 0.92554 0.91067 0.91692 0.90971 0.93535 0.93939 0.91646 0.92649 0.94241 0.91463 0.93276 0.83743 0.92583 0.93063 0.91798 0.97216 0.96055 0.93165 0.82782 0.81691 0.75641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.19 71.98 0.66 -1.69 16 2 C -0.09 -1.95 3.16 -10.79 -0.03 -1.99 16 3 C -0.14 -3.51 9.09 71.98 0.65 -2.86 16 4 C 0.06 1.59 5.32 71.98 0.38 1.97 16 5 O -0.39 -11.98 9.19 -148.98 -1.37 -13.35 16 6 C 0.08 2.36 5.76 71.98 0.41 2.77 16 7 C 0.17 5.41 2.85 44.17 0.13 5.54 16 8 H 0.12 3.51 7.42 -2.39 -0.02 3.50 16 9 N -0.66 -25.20 5.71 -473.31 -2.70 -27.90 16 10 C 0.10 4.03 2.53 44.91 0.11 4.14 16 11 H 0.06 2.56 7.43 -2.39 -0.02 2.54 16 12 C -0.17 -5.37 8.92 71.98 0.64 -4.73 16 13 C 0.00 -0.06 3.72 29.85 0.11 0.05 16 14 C -0.48 -28.06 9.39 25.60 0.24 -27.82 16 15 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 16 C 0.00 -0.14 5.47 84.65 0.46 0.32 16 17 N -0.96 -61.52 13.96 21.45 0.30 -61.22 16 18 Si 0.94 45.90 27.46 68.60 1.88 47.78 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.25 -11.20 6.55 99.48 0.65 -10.55 16 22 C -0.02 -0.69 3.42 24.83 0.09 -0.61 16 23 C -0.23 -5.66 10.76 22.19 0.24 -5.42 16 24 C -0.22 -4.73 10.91 22.19 0.24 -4.49 16 25 C -0.05 -1.16 12.09 66.97 0.81 -0.35 16 26 O -0.18 -5.12 9.95 -2.54 -0.03 -5.14 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 1.26 7.82 -2.39 -0.02 1.24 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.34 13.14 7.78 -89.69 -0.70 12.44 16 39 H 0.06 1.69 6.15 -2.38 -0.01 1.67 16 40 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.01 0.46 7.56 -2.39 -0.02 0.44 16 43 H 0.02 0.99 7.21 -2.38 -0.02 0.97 16 44 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 45 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 46 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 47 H 0.23 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -69.32 379.16 3.40 -65.92 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.17 Total: 29.07 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 5.15 Total: -35.16 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -2.40 Total: -89.12 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -1.39 Total: -18.49 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.88 Total: 47.78 kcal Total: -69.32 3.40 -65.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278899688.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.556 kcal (2) G-P(sol) polarization free energy of solvation -69.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds