Wall clock time and date at job start Tue Mar 31 2020 07:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 C 1.53003 * 109.46781 * 120.00362 * 2 1 3 5 5 O 1.42901 * 109.46429 * 174.99978 * 4 2 1 6 6 C 1.42899 * 113.99649 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47405 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47398 * 184.99964 * 7 6 5 9 9 N 1.46901 * 109.46769 * 64.99669 * 7 6 5 10 10 C 1.46900 * 110.99890 * 155.00113 * 9 7 6 11 11 H 1.09007 * 109.46815 * 35.00231 * 10 9 7 12 12 C 1.52997 * 109.47447 * 275.00408 * 10 9 7 13 13 C 1.53002 * 109.47262 * 154.99934 * 10 9 7 14 14 C 1.50702 * 109.47231 * 295.00068 * 13 10 9 15 15 H 1.08000 * 119.99950 * 0.02562 * 14 13 10 16 16 C 1.37873 * 119.99833 * 179.97438 * 14 13 10 17 17 N 1.31520 * 119.99739 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00371 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47070 * 89.99663 * 18 16 14 20 20 H 1.48500 * 109.47555 * 209.99910 * 18 16 14 21 21 H 1.48503 * 109.46908 * 329.99844 * 18 16 14 22 22 C 1.50699 * 109.47083 * 304.99910 * 7 6 5 23 23 C 1.34513 * 125.79239 * 259.99800 * 22 7 6 24 24 C 1.41378 * 106.84428 * 179.97438 * 23 22 7 25 25 C 1.34521 * 106.83906 * 0.02562 * 24 23 22 26 26 O 1.34300 * 108.41926 * 359.73394 * 25 24 23 27 27 H 1.09006 * 109.46651 * 300.00131 * 1 2 3 28 28 H 1.08998 * 109.47052 * 59.99600 * 1 2 3 29 29 H 1.08997 * 109.47620 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46612 * 239.99998 * 2 1 3 31 31 H 1.08997 * 109.46882 * 60.00171 * 3 2 1 32 32 H 1.09004 * 109.46909 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47445 * 300.00159 * 3 2 1 34 34 H 1.08990 * 109.47090 * 55.00005 * 4 2 1 35 35 H 1.08992 * 109.46809 * 294.99297 * 4 2 1 36 36 H 1.09002 * 109.47445 * 59.99875 * 6 5 4 37 37 H 1.09002 * 109.47167 * 299.99793 * 6 5 4 38 38 H 1.00898 * 111.00476 * 278.95503 * 9 7 6 39 39 H 1.08997 * 109.47366 * 179.97438 * 12 10 9 40 40 H 1.09007 * 109.46968 * 299.99729 * 12 10 9 41 41 H 1.09006 * 109.47304 * 59.99728 * 12 10 9 42 42 H 1.08994 * 109.46942 * 55.00312 * 13 10 9 43 43 H 1.09001 * 109.46838 * 174.99925 * 13 10 9 44 44 H 0.97002 * 120.00087 * 180.02562 * 17 16 14 45 45 H 1.08001 * 126.57541 * 359.96723 * 23 22 7 46 46 H 1.07994 * 126.58070 * 180.02562 * 24 23 22 47 47 H 1.08001 * 125.78901 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 3.4641 -0.8239 1.1919 6 6 4.0449 -1.4858 2.3174 7 6 5.5648 -1.5384 2.1497 8 1 6.0001 -2.1200 2.9624 9 7 6.1081 -0.1739 2.1784 10 6 7.5120 -0.1752 2.6107 11 1 8.0072 -1.0704 2.2343 12 6 7.5751 -0.1620 4.1393 13 6 8.2163 1.0667 2.0604 14 6 8.2623 0.9929 0.5559 15 1 7.8319 0.1453 0.0434 16 6 8.8530 2.0080 -0.1662 17 7 8.8927 1.9439 -1.4793 18 14 9.5968 3.4744 0.7201 19 1 11.0235 3.1971 1.0248 20 1 9.5002 4.6773 -0.1454 21 1 8.8580 3.7147 1.9857 22 6 5.9026 -2.1861 0.8316 23 6 6.2830 -3.4645 0.6578 24 6 6.4963 -3.6437 -0.7283 25 6 6.2341 -2.4637 -1.3186 26 8 5.8697 -1.5861 -0.3696 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6053 -1.7198 1.2951 35 1 1.7517 -0.1584 2.1369 36 1 3.6519 -2.5002 2.3850 37 1 3.7982 -0.9391 3.2275 38 1 6.0067 0.2747 1.2803 39 1 8.6168 -0.1635 4.4600 40 1 7.0799 0.7332 4.5156 41 1 7.0733 -1.0468 4.5313 42 1 7.6690 1.9591 2.3639 43 1 9.2320 1.1123 2.4533 44 1 9.3086 2.6579 -1.9874 45 1 6.4026 -4.2109 1.4292 46 1 6.8097 -4.5532 -1.2189 47 1 6.3005 -2.2584 -2.3768 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278899690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:02 Heat of formation + Delta-G solvation = -50.369486 kcal Electronic energy + Delta-G solvation = -25317.951635 eV Core-core repulsion = 21887.988532 eV Total energy + Delta-G solvation = -3429.963102 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98374 -38.30051 -36.81699 -34.92327 -33.03968 -32.36351 -31.67763 -28.41925 -27.81736 -27.44214 -27.00972 -25.47709 -22.85717 -22.09170 -21.18743 -20.17427 -19.64126 -19.34366 -17.22225 -16.67168 -16.45574 -15.79849 -15.52994 -14.91154 -14.88303 -14.53889 -14.26639 -13.94340 -13.40995 -12.94981 -12.71666 -12.62066 -12.40120 -12.29402 -12.19699 -12.08681 -11.93717 -11.92540 -11.69911 -11.56878 -11.29496 -10.99784 -10.85248 -10.73998 -10.70785 -10.45060 -10.38284 -9.72524 -9.46868 -9.36652 -9.30592 -9.11754 -8.48346 -7.97926 -7.76698 -5.98287 -3.95691 2.34545 3.10966 3.34449 3.42258 3.46871 3.55671 3.85991 4.50649 4.75390 4.91571 4.96519 5.04720 5.18199 5.35795 5.38851 5.46399 5.49154 5.51474 5.56617 5.61165 5.66066 5.73214 5.76819 5.83868 5.87375 5.92714 6.00566 6.06056 6.16282 6.18573 6.25893 6.32238 6.38431 6.44198 6.60517 6.63046 6.72583 6.79744 6.97682 7.18038 7.32254 7.46999 7.69080 7.82927 7.91854 8.24964 8.58337 9.07790 9.64426 11.14752 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.005409 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.681124 B = 5174.962901 C = 5721.920692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.144 4.144 4 C 0.069 3.931 5 O -0.366 6.366 6 C 0.077 3.923 7 C 0.169 3.831 8 H 0.108 0.892 9 N -0.668 5.668 10 C 0.092 3.908 11 H 0.037 0.963 12 C -0.139 4.139 13 C -0.016 4.016 14 C -0.519 4.519 15 H 0.075 0.925 16 C 0.070 3.930 17 N -0.900 5.900 18 Si 0.877 3.123 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.265 1.265 22 C -0.015 4.015 23 C -0.228 4.228 24 C -0.227 4.227 25 C -0.029 4.029 26 O -0.141 6.141 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.373 0.627 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.039 0.961 42 H 0.025 0.975 43 H 0.016 0.984 44 H 0.261 0.739 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 -8.429 5.992 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.008 4.008 5 O -0.285 6.285 6 C -0.001 4.001 7 C 0.058 3.942 8 H 0.126 0.874 9 N -0.303 5.303 10 C -0.018 4.018 11 H 0.055 0.945 12 C -0.197 4.197 13 C -0.054 4.054 14 C -0.557 4.557 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.705 3.295 19 H -0.206 1.206 20 H -0.216 1.216 21 H -0.189 1.189 22 C -0.069 4.069 23 C -0.248 4.248 24 C -0.247 4.247 25 C -0.098 4.098 26 O -0.034 6.034 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.197 0.803 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.043 0.957 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.155 0.845 46 H 0.157 0.843 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -13.315 -7.767 6.257 16.636 hybrid contribution 0.951 -0.047 -0.409 1.036 sum -12.363 -7.814 5.848 15.752 Atomic orbital electron populations 1.21785 0.94892 1.01504 1.01986 1.21061 0.94805 0.97362 0.98020 1.21775 1.02989 0.94549 1.00848 1.22485 0.82138 0.98331 0.97870 1.88028 1.18918 1.78827 1.42707 1.22574 0.92213 0.95574 0.89714 1.20406 0.93625 0.91457 0.88717 0.87434 1.60706 1.18752 1.13019 1.37794 1.21465 0.87456 0.99548 0.93282 0.94478 1.21861 1.00294 1.00906 0.96601 1.19759 0.95008 0.93484 0.97136 1.21130 1.37874 1.07364 0.89350 0.90667 1.24974 0.95595 0.97896 0.94634 1.69924 1.45011 1.33540 1.05457 0.86828 0.79794 0.82733 0.80193 1.20566 1.21557 1.18938 1.23258 1.03686 0.92478 0.87434 1.21445 1.09917 0.96634 0.96789 1.21633 1.09561 0.99180 0.94292 1.23966 1.03308 0.88188 0.94342 1.84129 1.65760 1.38913 1.14584 0.92696 0.92222 0.92889 0.90524 0.93185 0.90899 0.93178 0.94241 0.93696 0.93692 0.92009 0.80274 0.93201 0.92526 0.94176 0.95698 0.96609 0.92940 0.84491 0.84346 0.78847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.19 37.16 0.34 -1.02 16 2 C -0.09 -1.14 3.16 -90.62 -0.29 -1.43 16 3 C -0.14 -1.91 9.09 37.16 0.34 -1.58 16 4 C 0.07 0.87 5.32 37.16 0.20 1.06 16 5 O -0.37 -5.81 9.19 -35.23 -0.32 -6.13 16 6 C 0.08 1.08 5.76 37.16 0.21 1.30 16 7 C 0.17 2.75 2.67 -68.86 -0.18 2.57 16 8 H 0.11 1.54 7.10 -51.93 -0.37 1.17 16 9 N -0.67 -12.86 6.00 -100.95 -0.61 -13.46 16 10 C 0.09 1.85 2.40 -67.71 -0.16 1.69 16 11 H 0.04 0.80 7.64 -51.93 -0.40 0.40 16 12 C -0.14 -2.28 9.40 37.16 0.35 -1.93 16 13 C -0.02 -0.39 3.64 -27.88 -0.10 -0.49 16 14 C -0.52 -14.64 8.67 -34.44 -0.30 -14.94 16 15 H 0.08 2.30 7.43 -52.49 -0.39 1.91 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 18 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 22 C -0.02 -0.27 5.32 -35.63 -0.19 -0.46 16 23 C -0.23 -3.80 10.80 -39.70 -0.43 -4.23 16 24 C -0.23 -3.75 10.91 -39.70 -0.43 -4.18 16 25 C -0.03 -0.52 12.09 29.42 0.36 -0.17 16 26 O -0.14 -2.90 9.66 5.71 0.06 -2.85 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.18 7.82 -51.93 -0.41 0.78 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.37 8.46 6.51 -39.29 -0.26 8.21 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.04 0.57 7.43 -51.93 -0.39 0.18 16 42 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 43 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 46 H 0.14 1.90 8.06 -52.49 -0.42 1.47 16 47 H 0.19 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -31.46 379.81 -7.91 -39.37 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.48 Total: 8.84 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -0.39 Total: -21.85 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.17 Total: -40.43 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.27 Total: -8.98 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.46 -7.91 -39.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278899690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.001 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds