Wall clock time and date at job start Tue Mar 31 2020 07:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 C 1.53003 * 109.46781 * 120.00362 * 2 1 3 5 5 O 1.42901 * 109.46429 * 174.99978 * 4 2 1 6 6 C 1.42899 * 113.99649 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47405 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47398 * 184.99964 * 7 6 5 9 9 N 1.46901 * 109.46769 * 64.99669 * 7 6 5 10 10 C 1.46900 * 110.99890 * 155.00113 * 9 7 6 11 11 H 1.09007 * 109.46815 * 35.00231 * 10 9 7 12 12 C 1.52997 * 109.47447 * 275.00408 * 10 9 7 13 13 C 1.53002 * 109.47262 * 154.99934 * 10 9 7 14 14 C 1.50702 * 109.47231 * 295.00068 * 13 10 9 15 15 H 1.08000 * 119.99950 * 0.02562 * 14 13 10 16 16 C 1.37873 * 119.99833 * 179.97438 * 14 13 10 17 17 N 1.31520 * 119.99739 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00371 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47070 * 89.99663 * 18 16 14 20 20 H 1.48500 * 109.47555 * 209.99910 * 18 16 14 21 21 H 1.48503 * 109.46908 * 329.99844 * 18 16 14 22 22 C 1.50699 * 109.47083 * 304.99910 * 7 6 5 23 23 C 1.34513 * 125.79239 * 259.99800 * 22 7 6 24 24 C 1.41378 * 106.84428 * 179.97438 * 23 22 7 25 25 C 1.34521 * 106.83906 * 0.02562 * 24 23 22 26 26 O 1.34300 * 108.41926 * 359.73394 * 25 24 23 27 27 H 1.09006 * 109.46651 * 300.00131 * 1 2 3 28 28 H 1.08998 * 109.47052 * 59.99600 * 1 2 3 29 29 H 1.08997 * 109.47620 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46612 * 239.99998 * 2 1 3 31 31 H 1.08997 * 109.46882 * 60.00171 * 3 2 1 32 32 H 1.09004 * 109.46909 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47445 * 300.00159 * 3 2 1 34 34 H 1.08990 * 109.47090 * 55.00005 * 4 2 1 35 35 H 1.08992 * 109.46809 * 294.99297 * 4 2 1 36 36 H 1.09002 * 109.47445 * 59.99875 * 6 5 4 37 37 H 1.09002 * 109.47167 * 299.99793 * 6 5 4 38 38 H 1.00898 * 111.00476 * 278.95503 * 9 7 6 39 39 H 1.08997 * 109.47366 * 179.97438 * 12 10 9 40 40 H 1.09007 * 109.46968 * 299.99729 * 12 10 9 41 41 H 1.09006 * 109.47304 * 59.99728 * 12 10 9 42 42 H 1.08994 * 109.46942 * 55.00312 * 13 10 9 43 43 H 1.09001 * 109.46838 * 174.99925 * 13 10 9 44 44 H 0.97002 * 120.00087 * 180.02562 * 17 16 14 45 45 H 1.08001 * 126.57541 * 359.96723 * 23 22 7 46 46 H 1.07994 * 126.58070 * 180.02562 * 24 23 22 47 47 H 1.08001 * 125.78901 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 3.4641 -0.8239 1.1919 6 6 4.0449 -1.4858 2.3174 7 6 5.5648 -1.5384 2.1497 8 1 6.0001 -2.1200 2.9624 9 7 6.1081 -0.1739 2.1784 10 6 7.5120 -0.1752 2.6107 11 1 8.0072 -1.0704 2.2343 12 6 7.5751 -0.1620 4.1393 13 6 8.2163 1.0667 2.0604 14 6 8.2623 0.9929 0.5559 15 1 7.8319 0.1453 0.0434 16 6 8.8530 2.0080 -0.1662 17 7 8.8927 1.9439 -1.4793 18 14 9.5968 3.4744 0.7201 19 1 11.0235 3.1971 1.0248 20 1 9.5002 4.6773 -0.1454 21 1 8.8580 3.7147 1.9857 22 6 5.9026 -2.1861 0.8316 23 6 6.2830 -3.4645 0.6578 24 6 6.4963 -3.6437 -0.7283 25 6 6.2341 -2.4637 -1.3186 26 8 5.8697 -1.5861 -0.3696 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6053 -1.7198 1.2951 35 1 1.7517 -0.1584 2.1369 36 1 3.6519 -2.5002 2.3850 37 1 3.7982 -0.9391 3.2275 38 1 6.0067 0.2747 1.2803 39 1 8.6168 -0.1635 4.4600 40 1 7.0799 0.7332 4.5156 41 1 7.0733 -1.0468 4.5313 42 1 7.6690 1.9591 2.3639 43 1 9.2320 1.1123 2.4533 44 1 9.3086 2.6579 -1.9874 45 1 6.4026 -4.2109 1.4292 46 1 6.8097 -4.5532 -1.2189 47 1 6.3005 -2.2584 -2.3768 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278899690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:01 Heat of formation + Delta-G solvation = -70.182024 kcal Electronic energy + Delta-G solvation = -25318.810771 eV Core-core repulsion = 21887.988532 eV Total energy + Delta-G solvation = -3430.822239 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.36512 -39.45881 -38.23066 -36.05763 -34.84085 -33.87669 -33.29568 -30.06740 -29.43945 -28.60960 -27.98968 -26.51295 -24.66386 -23.48893 -22.55782 -21.29025 -21.01548 -20.82471 -18.95609 -18.45202 -17.59009 -17.02462 -16.78587 -16.52314 -16.26947 -16.10595 -15.70954 -15.11049 -14.79155 -14.40695 -14.18104 -14.03174 -13.66211 -13.59824 -13.57272 -13.52260 -13.29220 -13.10669 -13.01520 -12.82950 -12.72465 -12.44888 -12.27518 -12.14806 -11.88224 -11.73099 -11.70355 -11.44429 -11.25244 -11.19246 -10.73065 -10.70677 -10.39060 -9.40486 -9.21696 -8.23253 -6.25156 0.96576 1.34744 1.37464 1.49035 1.79180 2.24699 2.38883 2.83751 3.09556 3.41279 3.77070 3.94980 4.00922 4.16022 4.18580 4.24653 4.27204 4.32393 4.45173 4.51237 4.57681 4.60576 4.66879 4.70971 4.76744 4.79407 4.83431 4.96286 4.99676 5.01088 5.07347 5.08283 5.15450 5.23360 5.24461 5.29897 5.36091 5.42042 5.48126 5.53465 5.71301 5.72257 6.20942 6.33915 6.39113 6.49385 6.56483 6.82420 7.37899 8.93012 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.005409 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.681124 B = 5174.962901 C = 5721.920692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C -0.141 4.141 4 C 0.066 3.934 5 O -0.399 6.399 6 C 0.079 3.921 7 C 0.166 3.834 8 H 0.132 0.868 9 N -0.666 5.666 10 C 0.096 3.904 11 H 0.018 0.982 12 C -0.129 4.129 13 C -0.014 4.014 14 C -0.517 4.517 15 H 0.036 0.964 16 C 0.008 3.992 17 N -0.948 5.948 18 Si 0.945 3.055 19 H -0.269 1.269 20 H -0.288 1.288 21 H -0.249 1.249 22 C -0.034 4.034 23 C -0.230 4.230 24 C -0.221 4.221 25 C -0.064 4.064 26 O -0.178 6.178 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.032 0.968 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.350 0.650 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.022 0.978 43 H 0.021 0.979 44 H 0.262 0.738 45 H 0.168 0.832 46 H 0.167 0.833 47 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.961 -9.141 8.702 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C -0.198 4.198 4 C -0.011 4.011 5 O -0.318 6.318 6 C 0.002 3.998 7 C 0.055 3.945 8 H 0.150 0.850 9 N -0.298 5.298 10 C -0.014 4.014 11 H 0.036 0.964 12 C -0.187 4.187 13 C -0.051 4.051 14 C -0.555 4.555 15 H 0.055 0.945 16 C -0.189 4.189 17 N -0.589 5.589 18 Si 0.769 3.231 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.172 1.172 22 C -0.086 4.086 23 C -0.249 4.249 24 C -0.240 4.240 25 C -0.132 4.132 26 O -0.073 6.073 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.170 0.830 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.185 0.815 46 H 0.185 0.815 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -14.127 -8.509 9.004 18.790 hybrid contribution 1.168 0.089 -1.328 1.771 sum -12.958 -8.420 7.676 17.255 Atomic orbital electron populations 1.21725 0.92267 1.02581 1.02811 1.21084 0.96897 0.96052 0.97285 1.21723 1.00326 0.95992 1.01750 1.22639 0.80730 0.99422 0.98265 1.88020 1.20772 1.79333 1.43713 1.22619 0.90583 0.96983 0.89631 1.20716 0.95286 0.89891 0.88600 0.85033 1.60794 1.17980 1.14983 1.36022 1.21404 0.87521 0.96597 0.95881 0.96354 1.21764 1.01471 1.02401 0.93024 1.19717 0.95766 0.95448 0.94196 1.21380 1.36517 1.05897 0.91749 0.94533 1.25900 0.96425 1.01245 0.95321 1.70086 1.46708 1.34821 1.07311 0.85737 0.79313 0.78634 0.79374 1.19471 1.21463 1.17220 1.23747 1.04179 0.93299 0.87405 1.21869 1.08844 0.96677 0.97549 1.22031 1.08021 0.99451 0.94486 1.24468 1.04781 0.88932 0.95027 1.84098 1.66721 1.40522 1.15937 0.91568 0.91707 0.91689 0.92528 0.92046 0.94877 0.92493 0.92626 0.92562 0.91335 0.90708 0.83044 0.92191 0.92315 0.91369 0.96015 0.96060 0.92939 0.81452 0.81501 0.77773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.19 71.98 0.66 -1.67 16 2 C -0.09 -2.29 3.16 -10.79 -0.03 -2.32 16 3 C -0.14 -3.84 9.09 71.98 0.65 -3.19 16 4 C 0.07 1.59 5.32 71.98 0.38 1.98 16 5 O -0.40 -12.71 9.19 -148.98 -1.37 -14.08 16 6 C 0.08 2.10 5.76 71.98 0.41 2.51 16 7 C 0.17 5.23 2.67 44.17 0.12 5.35 16 8 H 0.13 3.42 7.10 -2.39 -0.02 3.41 16 9 N -0.67 -25.67 6.00 -473.30 -2.84 -28.51 16 10 C 0.10 3.78 2.40 44.92 0.11 3.89 16 11 H 0.02 0.79 7.64 -2.38 -0.02 0.77 16 12 C -0.13 -3.85 9.40 71.98 0.68 -3.18 16 13 C -0.01 -0.65 3.64 29.85 0.11 -0.54 16 14 C -0.52 -30.16 8.67 25.60 0.22 -29.94 16 15 H 0.04 2.37 7.43 -2.91 -0.02 2.35 16 16 C 0.01 0.46 5.47 84.65 0.46 0.92 16 17 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 18 Si 0.95 45.73 27.47 68.60 1.88 47.62 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 21 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 22 C -0.03 -1.23 5.32 24.83 0.13 -1.10 16 23 C -0.23 -7.41 10.80 22.19 0.24 -7.17 16 24 C -0.22 -7.21 10.91 22.19 0.24 -6.97 16 25 C -0.06 -2.42 12.09 66.97 0.81 -1.61 16 26 O -0.18 -7.77 9.66 -2.49 -0.02 -7.79 16 27 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.03 1.14 7.82 -2.38 -0.02 1.12 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.35 16.58 6.51 -89.70 -0.58 16.00 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.74 8.14 -2.38 -0.02 1.73 16 41 H 0.07 1.66 7.43 -2.38 -0.02 1.64 16 42 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 43 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 44 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 45 H 0.17 4.21 8.06 -2.91 -0.02 4.19 16 46 H 0.17 4.31 8.06 -2.91 -0.02 4.28 16 47 H 0.21 6.72 8.06 -2.91 -0.02 6.69 16 Total: -1.00 -71.46 379.81 3.43 -68.03 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: 0.28 Total: 38.21 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 5.20 Total: -43.05 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -2.54 Total: -88.94 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.39 Total: -21.87 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.62 kcal Total: -71.46 3.43 -68.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278899690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.150 kcal (2) G-P(sol) polarization free energy of solvation -71.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds