Wall clock time and date at job start Tue Mar 31 2020 07:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46900 * 2 1 4 4 C 1.52995 * 109.47233 * 120.00507 * 2 1 3 5 5 O 1.42899 * 109.47354 * 175.00218 * 4 2 1 6 6 C 1.42898 * 114.00144 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47196 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47102 * 175.00015 * 7 6 5 9 9 N 1.46896 * 109.47290 * 295.00281 * 7 6 5 10 10 C 1.46901 * 111.00119 * 204.99475 * 9 7 6 11 11 H 1.08991 * 109.47204 * 325.00256 * 10 9 7 12 12 C 1.53000 * 109.46756 * 85.00281 * 10 9 7 13 13 C 1.53001 * 109.47569 * 204.99711 * 10 9 7 14 14 C 1.50700 * 109.46703 * 65.00138 * 13 10 9 15 15 H 1.08001 * 120.00566 * 0.02562 * 14 13 10 16 16 C 1.37882 * 120.00086 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99970 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99809 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47553 * 89.99696 * 18 16 14 20 20 H 1.48503 * 109.47239 * 209.99862 * 18 16 14 21 21 H 1.48505 * 109.47498 * 329.99716 * 18 16 14 22 22 C 1.50702 * 109.47012 * 55.00029 * 7 6 5 23 23 C 1.34512 * 125.79146 * 99.99849 * 22 7 6 24 24 C 1.41376 * 106.84688 * 179.75198 * 23 22 7 25 25 C 1.34517 * 106.83881 * 0.37683 * 24 23 22 26 26 O 1.34305 * 125.78962 * 279.98071 * 22 7 6 27 27 H 1.08994 * 109.47055 * 299.99982 * 1 2 3 28 28 H 1.08997 * 109.46904 * 59.99883 * 1 2 3 29 29 H 1.09000 * 109.46838 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46696 * 240.00458 * 2 1 3 31 31 H 1.09005 * 109.47088 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47437 * 299.99790 * 3 2 1 33 33 H 1.09000 * 109.47517 * 60.00431 * 3 2 1 34 34 H 1.08995 * 109.47433 * 54.99544 * 4 2 1 35 35 H 1.09004 * 109.47035 * 294.99755 * 4 2 1 36 36 H 1.08997 * 109.47234 * 60.00170 * 6 5 4 37 37 H 1.09000 * 109.47324 * 299.99763 * 6 5 4 38 38 H 1.00897 * 111.00401 * 328.95253 * 9 7 6 39 39 H 1.08994 * 109.47788 * 59.99925 * 12 10 9 40 40 H 1.09004 * 109.46995 * 180.02562 * 12 10 9 41 41 H 1.09002 * 109.47088 * 300.00008 * 12 10 9 42 42 H 1.08991 * 109.47494 * 185.00324 * 13 10 9 43 43 H 1.08999 * 109.46960 * 305.00822 * 13 10 9 44 44 H 0.97004 * 119.99582 * 179.97438 * 17 16 14 45 45 H 1.08006 * 126.57585 * 359.97438 * 23 22 7 46 46 H 1.07998 * 126.58562 * 180.23597 * 24 23 22 47 47 H 1.08002 * 125.79423 * 179.89440 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 3.4642 -0.8238 1.1919 6 6 4.0451 -1.4847 2.3179 7 6 5.5650 -1.5374 2.1502 8 1 6.0151 -1.9610 3.0479 9 7 5.9010 -2.3756 0.9916 10 6 7.2524 -2.9367 1.1220 11 1 7.8997 -2.2136 1.6179 12 6 7.1932 -4.2212 1.9512 13 6 7.8101 -3.2520 -0.2674 14 6 7.9835 -1.9707 -1.0415 15 1 7.7225 -1.0260 -0.5878 16 6 8.4765 -2.0043 -2.3288 17 7 8.6273 -0.8862 -3.0045 18 14 8.9286 -3.6381 -3.1133 19 1 7.7450 -4.1937 -3.8172 20 1 10.0313 -3.4316 -4.0864 21 1 9.3692 -4.5879 -2.0602 22 6 6.0949 -0.1435 1.9323 23 6 6.6688 0.6349 2.8672 24 6 7.0192 1.8481 2.2314 25 6 6.6309 1.7417 0.9479 26 8 6.0746 0.5320 0.7717 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6054 -1.7198 1.2950 35 1 1.7517 -0.1584 2.1369 36 1 3.6522 -2.4991 2.3863 37 1 3.7984 -0.9373 3.2276 38 1 5.2170 -3.1061 0.8632 39 1 6.5459 -4.9444 1.4554 40 1 8.1960 -4.6374 2.0484 41 1 6.7959 -3.9967 2.9411 42 1 8.7747 -3.7495 -0.1674 43 1 7.1173 -3.9056 -0.7973 44 1 8.9745 -0.9098 -3.9100 45 1 6.8338 0.3805 3.9038 46 1 7.5034 2.6981 2.6889 47 1 6.7505 2.4987 0.1869 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278899692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:05 Heat of formation + Delta-G solvation = -40.663007 kcal Electronic energy + Delta-G solvation = -25288.986752 eV Core-core repulsion = 21859.444554 eV Total energy + Delta-G solvation = -3429.542198 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.79101 -38.41708 -36.92909 -34.95610 -32.98142 -32.19946 -31.59366 -28.61369 -27.71520 -27.27326 -27.04722 -25.46777 -22.82428 -22.34993 -21.00654 -20.22093 -19.65284 -19.46711 -16.96009 -16.49852 -16.38595 -16.05310 -15.41347 -14.94094 -14.70451 -14.34266 -14.16087 -13.74324 -13.66712 -13.19041 -12.93696 -12.56348 -12.41710 -12.32327 -12.16757 -12.12723 -12.03756 -11.89982 -11.77014 -11.63921 -11.23418 -11.05957 -10.81658 -10.79706 -10.67680 -10.47966 -10.08850 -9.74262 -9.50894 -9.42470 -9.22197 -8.89181 -8.29825 -7.79620 -7.66558 -5.77514 -3.69756 2.49416 3.20997 3.43554 3.50324 3.52425 3.72653 3.79341 4.57999 4.65221 4.87745 4.91134 5.04337 5.12398 5.24880 5.42111 5.45125 5.45979 5.52883 5.56007 5.58949 5.61025 5.64051 5.64560 5.71559 5.78301 5.79349 5.88433 5.90571 5.97680 6.12395 6.31742 6.36512 6.37238 6.44323 6.48893 6.52411 6.75187 6.84611 7.09113 7.22956 7.31677 7.42304 7.76574 7.98004 8.01956 8.11645 8.86760 9.39651 9.85794 11.36841 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.005158 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.473285 B = 5427.669921 C = 5720.867347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.143 4.143 4 C 0.066 3.934 5 O -0.353 6.353 6 C 0.065 3.935 7 C 0.166 3.834 8 H 0.077 0.923 9 N -0.645 5.645 10 C 0.096 3.904 11 H 0.071 0.929 12 C -0.184 4.184 13 C -0.002 4.002 14 C -0.481 4.481 15 H 0.083 0.917 16 C 0.060 3.940 17 N -0.909 5.909 18 Si 0.871 3.129 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.270 1.270 22 C 0.036 3.964 23 C -0.240 4.240 24 C -0.229 4.229 25 C -0.034 4.034 26 O -0.119 6.119 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.337 0.663 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.257 0.743 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.040 0.866 12.883 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.200 4.200 4 C -0.011 4.011 5 O -0.271 6.271 6 C -0.013 4.013 7 C 0.055 3.945 8 H 0.095 0.905 9 N -0.276 5.276 10 C -0.013 4.013 11 H 0.089 0.911 12 C -0.243 4.243 13 C -0.040 4.040 14 C -0.520 4.520 15 H 0.101 0.899 16 C -0.138 4.138 17 N -0.550 5.550 18 Si 0.699 3.301 19 H -0.207 1.207 20 H -0.219 1.219 21 H -0.195 1.195 22 C -0.018 4.018 23 C -0.259 4.259 24 C -0.249 4.249 25 C -0.103 4.103 26 O -0.011 6.011 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.157 0.843 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.066 0.934 45 H 0.152 0.848 46 H 0.154 0.846 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -12.798 1.408 11.879 17.518 hybrid contribution 0.202 -1.457 0.529 1.563 sum -12.596 -0.050 12.408 17.681 Atomic orbital electron populations 1.21782 0.94859 1.01617 1.01887 1.21057 0.94776 0.97202 0.98270 1.21757 1.02753 0.94799 1.00678 1.22525 0.82294 0.98542 0.97751 1.88173 1.18620 1.78397 1.41914 1.22663 0.92648 0.96329 0.89618 1.20064 0.92127 0.88231 0.94072 0.90522 1.60323 1.03578 1.25879 1.37822 1.21662 0.89238 0.92516 0.97903 0.91105 1.22624 1.02052 1.00242 0.99381 1.19587 0.94662 0.98025 0.91710 1.21093 1.39640 0.93401 0.97836 0.89937 1.24987 0.96141 0.95401 0.97317 1.69919 1.47874 1.26019 1.11171 0.86935 0.78069 0.85720 0.79327 1.20731 1.21867 1.19513 1.21987 1.01845 0.94348 0.83596 1.21355 1.08565 0.95885 1.00134 1.21558 1.08572 0.99897 0.94848 1.23993 1.00830 0.87619 0.97905 1.84277 1.60455 1.23284 1.33093 0.92865 0.92164 0.92764 0.89962 0.91145 0.93076 0.93504 0.93940 0.94099 0.93031 0.93036 0.84298 0.92914 0.92304 0.94102 0.96699 0.97113 0.93350 0.84787 0.84573 0.79094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.19 37.16 0.34 -1.00 16 2 C -0.09 -1.14 3.16 -90.62 -0.29 -1.43 16 3 C -0.14 -1.81 9.09 37.16 0.34 -1.47 16 4 C 0.07 0.81 5.32 37.15 0.20 1.00 16 5 O -0.35 -5.51 9.20 -35.23 -0.32 -5.83 16 6 C 0.06 0.86 5.48 37.16 0.20 1.06 16 7 C 0.17 2.61 2.69 -68.87 -0.19 2.43 16 8 H 0.08 1.05 7.10 -51.93 -0.37 0.68 16 9 N -0.64 -11.98 5.70 -100.96 -0.58 -12.56 16 10 C 0.10 1.88 2.34 -67.71 -0.16 1.72 16 11 H 0.07 1.49 7.63 -51.93 -0.40 1.10 16 12 C -0.18 -2.80 9.15 37.16 0.34 -2.46 16 13 C 0.00 -0.05 3.72 -27.88 -0.10 -0.16 16 14 C -0.48 -14.05 9.39 -34.44 -0.32 -14.38 16 15 H 0.08 2.66 7.67 -52.49 -0.40 2.25 16 16 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 17 N -0.91 -29.06 13.96 55.43 0.77 -28.29 16 18 Si 0.87 22.56 27.47 -169.99 -4.67 17.89 16 19 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 21 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 22 C 0.04 0.66 5.37 -35.62 -0.19 0.47 16 23 C -0.24 -4.04 10.80 -39.71 -0.43 -4.47 16 24 C -0.23 -3.86 10.91 -39.70 -0.43 -4.29 16 25 C -0.03 -0.63 12.09 29.42 0.36 -0.27 16 26 O -0.12 -2.56 10.20 5.68 0.06 -2.51 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.09 7.82 -51.93 -0.41 0.69 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.57 8.02 -51.93 -0.42 0.16 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.34 5.67 8.02 -39.29 -0.32 5.35 16 39 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.52 7.43 -51.93 -0.39 0.14 16 42 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 43 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 45 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 46 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 47 H 0.19 3.03 8.06 -52.49 -0.42 2.61 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -33.97 381.94 -7.96 -41.93 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.54 Total: 5.13 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -0.43 Total: -21.51 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.20 Total: -40.84 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.27 Total: -8.34 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.97 -7.96 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278899692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.263 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds