Wall clock time and date at job start Tue Mar 31 2020 07:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46900 * 2 1 4 4 C 1.52995 * 109.47233 * 120.00507 * 2 1 3 5 5 O 1.42899 * 109.47354 * 175.00218 * 4 2 1 6 6 C 1.42898 * 114.00144 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47196 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47102 * 175.00015 * 7 6 5 9 9 N 1.46896 * 109.47290 * 295.00281 * 7 6 5 10 10 C 1.46901 * 111.00119 * 204.99475 * 9 7 6 11 11 H 1.08991 * 109.47204 * 325.00256 * 10 9 7 12 12 C 1.53000 * 109.46756 * 85.00281 * 10 9 7 13 13 C 1.53001 * 109.47569 * 204.99711 * 10 9 7 14 14 C 1.50700 * 109.46703 * 65.00138 * 13 10 9 15 15 H 1.08001 * 120.00566 * 0.02562 * 14 13 10 16 16 C 1.37882 * 120.00086 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99970 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99809 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47553 * 89.99696 * 18 16 14 20 20 H 1.48503 * 109.47239 * 209.99862 * 18 16 14 21 21 H 1.48505 * 109.47498 * 329.99716 * 18 16 14 22 22 C 1.50702 * 109.47012 * 55.00029 * 7 6 5 23 23 C 1.34512 * 125.79146 * 99.99849 * 22 7 6 24 24 C 1.41376 * 106.84688 * 179.75198 * 23 22 7 25 25 C 1.34517 * 106.83881 * 0.37683 * 24 23 22 26 26 O 1.34305 * 125.78962 * 279.98071 * 22 7 6 27 27 H 1.08994 * 109.47055 * 299.99982 * 1 2 3 28 28 H 1.08997 * 109.46904 * 59.99883 * 1 2 3 29 29 H 1.09000 * 109.46838 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46696 * 240.00458 * 2 1 3 31 31 H 1.09005 * 109.47088 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47437 * 299.99790 * 3 2 1 33 33 H 1.09000 * 109.47517 * 60.00431 * 3 2 1 34 34 H 1.08995 * 109.47433 * 54.99544 * 4 2 1 35 35 H 1.09004 * 109.47035 * 294.99755 * 4 2 1 36 36 H 1.08997 * 109.47234 * 60.00170 * 6 5 4 37 37 H 1.09000 * 109.47324 * 299.99763 * 6 5 4 38 38 H 1.00897 * 111.00401 * 328.95253 * 9 7 6 39 39 H 1.08994 * 109.47788 * 59.99925 * 12 10 9 40 40 H 1.09004 * 109.46995 * 180.02562 * 12 10 9 41 41 H 1.09002 * 109.47088 * 300.00008 * 12 10 9 42 42 H 1.08991 * 109.47494 * 185.00324 * 13 10 9 43 43 H 1.08999 * 109.46960 * 305.00822 * 13 10 9 44 44 H 0.97004 * 119.99582 * 179.97438 * 17 16 14 45 45 H 1.08006 * 126.57585 * 359.97438 * 23 22 7 46 46 H 1.07998 * 126.58562 * 180.23597 * 24 23 22 47 47 H 1.08002 * 125.79423 * 179.89440 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 3.4642 -0.8238 1.1919 6 6 4.0451 -1.4847 2.3179 7 6 5.5650 -1.5374 2.1502 8 1 6.0151 -1.9610 3.0479 9 7 5.9010 -2.3756 0.9916 10 6 7.2524 -2.9367 1.1220 11 1 7.8997 -2.2136 1.6179 12 6 7.1932 -4.2212 1.9512 13 6 7.8101 -3.2520 -0.2674 14 6 7.9835 -1.9707 -1.0415 15 1 7.7225 -1.0260 -0.5878 16 6 8.4765 -2.0043 -2.3288 17 7 8.6273 -0.8862 -3.0045 18 14 8.9286 -3.6381 -3.1133 19 1 7.7450 -4.1937 -3.8172 20 1 10.0313 -3.4316 -4.0864 21 1 9.3692 -4.5879 -2.0602 22 6 6.0949 -0.1435 1.9323 23 6 6.6688 0.6349 2.8672 24 6 7.0192 1.8481 2.2314 25 6 6.6309 1.7417 0.9479 26 8 6.0746 0.5320 0.7717 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6054 -1.7198 1.2950 35 1 1.7517 -0.1584 2.1369 36 1 3.6522 -2.4991 2.3863 37 1 3.7984 -0.9373 3.2276 38 1 5.2170 -3.1061 0.8632 39 1 6.5459 -4.9444 1.4554 40 1 8.1960 -4.6374 2.0484 41 1 6.7959 -3.9967 2.9411 42 1 8.7747 -3.7495 -0.1674 43 1 7.1173 -3.9056 -0.7973 44 1 8.9745 -0.9098 -3.9100 45 1 6.8338 0.3805 3.9038 46 1 7.5034 2.6981 2.6889 47 1 6.7505 2.4987 0.1869 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278899692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:04 Heat of formation + Delta-G solvation = -63.203277 kcal Electronic energy + Delta-G solvation = -25289.964171 eV Core-core repulsion = 21859.444554 eV Total energy + Delta-G solvation = -3430.519617 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.19553 -39.53012 -38.25546 -36.04900 -34.79362 -33.76271 -33.19936 -30.27593 -29.30589 -28.37626 -28.00381 -26.46569 -24.61617 -23.72930 -22.39359 -21.43146 -21.06984 -20.80742 -18.70700 -18.19917 -17.59282 -17.18717 -16.73654 -16.36521 -16.12242 -15.91030 -15.42228 -15.07922 -14.94433 -14.69295 -14.28345 -14.02505 -13.76475 -13.54945 -13.46472 -13.42694 -13.35216 -13.14163 -13.06218 -12.92754 -12.61687 -12.50759 -12.21194 -11.94556 -11.79727 -11.73454 -11.64511 -11.44097 -11.38497 -11.09698 -10.61822 -10.59075 -10.42073 -9.17322 -9.02012 -8.09912 -6.07075 1.09598 1.37337 1.39023 1.49563 1.86943 2.44069 2.47795 2.78326 3.20118 3.36104 3.84366 3.92483 3.99237 4.12417 4.19526 4.24818 4.31465 4.36247 4.40805 4.46675 4.50232 4.54329 4.56626 4.62775 4.70480 4.78821 4.80996 4.97220 4.99313 5.03870 5.07247 5.10449 5.19648 5.22323 5.24854 5.32016 5.40483 5.42172 5.46460 5.55017 5.80673 5.82526 6.27103 6.45018 6.56430 6.67357 6.77130 7.03599 7.51925 9.07946 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.005158 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.473285 B = 5427.669921 C = 5720.867347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C -0.138 4.138 4 C 0.064 3.936 5 O -0.390 6.390 6 C 0.066 3.934 7 C 0.165 3.835 8 H 0.105 0.895 9 N -0.671 5.671 10 C 0.104 3.896 11 H 0.048 0.952 12 C -0.171 4.171 13 C -0.002 4.002 14 C -0.480 4.480 15 H 0.037 0.963 16 C -0.008 4.008 17 N -0.961 5.961 18 Si 0.944 3.056 19 H -0.275 1.275 20 H -0.292 1.292 21 H -0.246 1.246 22 C 0.016 3.984 23 C -0.243 4.243 24 C -0.221 4.221 25 C -0.073 4.073 26 O -0.162 6.162 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.347 0.653 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.017 0.983 43 H 0.014 0.986 44 H 0.257 0.743 45 H 0.166 0.834 46 H 0.164 0.836 47 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.186 -1.472 15.243 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 C -0.195 4.195 4 C -0.012 4.012 5 O -0.310 6.310 6 C -0.011 4.011 7 C 0.055 3.945 8 H 0.122 0.878 9 N -0.304 5.304 10 C -0.006 4.006 11 H 0.066 0.934 12 C -0.230 4.230 13 C -0.040 4.040 14 C -0.518 4.518 15 H 0.055 0.945 16 C -0.202 4.202 17 N -0.604 5.604 18 Si 0.769 3.231 19 H -0.201 1.201 20 H -0.218 1.218 21 H -0.170 1.170 22 C -0.036 4.036 23 C -0.262 4.262 24 C -0.240 4.240 25 C -0.141 4.141 26 O -0.055 6.055 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.167 0.833 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.036 0.964 43 H 0.032 0.968 44 H 0.065 0.935 45 H 0.184 0.816 46 H 0.182 0.818 47 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -13.956 -0.946 14.274 19.985 hybrid contribution 0.545 -0.598 -0.179 0.828 sum -13.411 -1.544 14.095 19.517 Atomic orbital electron populations 1.21719 0.92252 1.02611 1.02751 1.21092 0.96884 0.96160 0.97451 1.21694 1.00168 0.95968 1.01663 1.22658 0.80894 0.99645 0.98033 1.88152 1.20487 1.79053 1.43288 1.22754 0.90738 0.97972 0.89622 1.20307 0.94196 0.86217 0.93774 0.87798 1.60063 1.03314 1.26611 1.40432 1.21368 0.89359 0.94347 0.95491 0.93406 1.22454 1.02837 0.97622 1.00065 1.19565 0.95138 0.95221 0.94066 1.21365 1.38258 0.94032 0.98176 0.94482 1.25951 0.96524 0.99532 0.98187 1.70113 1.49754 1.28888 1.11647 0.85757 0.77795 0.80904 0.78618 1.20088 1.21817 1.16991 1.22755 1.02106 0.95675 0.83077 1.21774 1.07687 0.95418 1.01357 1.21950 1.07241 1.00818 0.94027 1.24419 1.02510 0.87696 0.99490 1.84233 1.61593 1.24527 1.35190 0.91468 0.91837 0.91703 0.92677 0.95007 0.92543 0.92028 0.92277 0.92642 0.90354 0.91025 0.83258 0.91785 0.91984 0.91079 0.96433 0.96798 0.93480 0.81639 0.81794 0.78409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.19 71.98 0.66 -1.64 16 2 C -0.10 -2.35 3.16 -10.79 -0.03 -2.38 16 3 C -0.14 -3.61 9.09 71.98 0.65 -2.96 16 4 C 0.06 1.49 5.32 71.98 0.38 1.87 16 5 O -0.39 -12.13 9.20 -148.98 -1.37 -13.50 16 6 C 0.07 1.61 5.48 71.98 0.39 2.00 16 7 C 0.17 4.99 2.69 44.17 0.12 5.11 16 8 H 0.10 2.53 7.10 -2.39 -0.02 2.51 16 9 N -0.67 -24.55 5.70 -473.32 -2.70 -27.24 16 10 C 0.10 3.96 2.34 44.92 0.11 4.06 16 11 H 0.05 2.02 7.63 -2.39 -0.02 2.00 16 12 C -0.17 -4.60 9.15 71.98 0.66 -3.94 16 13 C 0.00 -0.10 3.72 29.85 0.11 0.01 16 14 C -0.48 -28.94 9.39 25.60 0.24 -28.70 16 15 H 0.04 2.53 7.67 -2.91 -0.02 2.51 16 16 C -0.01 -0.50 5.47 84.66 0.46 -0.04 16 17 N -0.96 -64.12 13.96 21.45 0.30 -63.82 16 18 Si 0.94 47.03 27.47 68.60 1.88 48.91 16 19 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 21 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 22 C 0.02 0.62 5.37 24.83 0.13 0.75 16 23 C -0.24 -8.00 10.80 22.19 0.24 -7.76 16 24 C -0.22 -7.50 10.91 22.19 0.24 -7.26 16 25 C -0.07 -2.88 12.09 66.97 0.81 -2.07 16 26 O -0.16 -7.41 10.20 -2.58 -0.03 -7.43 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.03 1.06 7.82 -2.38 -0.02 1.04 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.47 8.02 -2.39 -0.02 1.45 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.35 11.14 8.02 -89.70 -0.72 10.42 16 39 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 40 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.07 1.50 7.43 -2.39 -0.02 1.49 16 42 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 43 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 44 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 45 H 0.17 4.23 8.06 -2.91 -0.02 4.21 16 46 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 47 H 0.20 6.99 8.06 -2.91 -0.02 6.96 16 Total: -1.00 -78.51 381.94 3.41 -75.10 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.14 Total: 30.94 kcal Atomic # 6 Polarization: -48.14 SS G_CDS: 5.18 Total: -42.95 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -2.40 Total: -91.06 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -1.40 Total: -20.93 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.88 Total: 48.91 kcal Total: -78.51 3.41 -75.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278899692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.898 kcal (2) G-P(sol) polarization free energy of solvation -78.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds