Wall clock time and date at job start Tue Mar 31 2020 08:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99777 * 2 1 4 4 N 1.46502 * 109.47310 * 124.99780 * 3 2 1 5 5 C 1.46499 * 119.99658 * 89.99973 * 4 3 2 6 6 C 1.50701 * 109.46992 * 90.00121 * 5 4 3 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 C 1.34775 * 120.00005 * 270.00108 * 4 3 2 15 15 O 1.21285 * 119.99996 * 179.97438 * 14 4 3 16 16 C 1.50698 * 120.00318 * 0.02562 * 14 4 3 17 17 C 1.53001 * 109.47377 * 179.97438 * 16 14 4 18 18 H 1.09003 * 109.46598 * 304.99530 * 17 16 14 19 19 C 1.53001 * 109.47017 * 64.99815 * 17 16 14 20 20 C 1.53005 * 109.46887 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46808 * 299.99755 * 20 19 17 22 22 C 1.52999 * 109.47386 * 60.00102 * 21 20 19 23 23 H 1.09000 * 109.47547 * 179.97438 * 22 21 20 24 24 O 1.42900 * 109.46978 * 59.99692 * 22 21 20 25 25 C 1.42902 * 113.99794 * 89.99781 * 24 22 21 26 26 C 1.52999 * 109.47021 * 184.99780 * 17 16 14 27 27 H 1.08003 * 119.99690 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.00487 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00487 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46987 * 5.00034 * 3 2 1 31 31 H 1.08994 * 109.46951 * 245.00241 * 3 2 1 32 32 H 1.09002 * 109.47391 * 330.00112 * 5 4 3 33 33 H 1.09001 * 109.46813 * 210.00168 * 5 4 3 34 34 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.47054 * 299.99977 * 16 14 4 36 36 H 1.09003 * 109.47164 * 59.99309 * 16 14 4 37 37 H 1.09007 * 109.46736 * 300.00074 * 19 17 16 38 38 H 1.09002 * 109.47304 * 59.99972 * 19 17 16 39 39 H 1.08993 * 109.46915 * 59.99514 * 20 19 17 40 40 H 1.08997 * 109.46791 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.46814 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47087 * 300.00188 * 21 20 19 43 43 H 1.08998 * 109.47418 * 300.00200 * 25 24 22 44 44 H 1.09003 * 109.46549 * 60.00512 * 25 24 22 45 45 H 1.09000 * 109.47143 * 179.97438 * 25 24 22 46 46 H 1.09002 * 109.47087 * 299.99898 * 26 17 16 47 47 H 1.08995 * 109.47327 * 59.99878 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3589 0.8258 0.9694 6 6 5.2614 1.9482 0.5259 7 1 4.8585 2.9395 0.3798 8 6 6.6018 1.7098 0.3077 9 7 7.0925 0.5027 0.4861 10 14 7.7206 3.1012 -0.2414 11 1 6.9298 4.3517 -0.3681 12 1 8.7971 3.2963 0.7628 13 1 8.3246 2.7617 -1.5549 14 6 2.5935 1.8224 2.3213 15 8 3.3635 1.8443 3.2582 16 6 1.1890 2.3426 2.4882 17 6 0.9952 2.8366 3.9232 18 1 1.2482 2.0373 4.6198 19 6 1.9053 4.0404 4.1755 20 6 1.7118 4.5340 5.6107 21 6 0.2527 4.9459 5.8160 22 6 -0.6574 3.7422 5.5637 23 1 -1.6969 4.0355 5.7104 24 8 -0.3253 2.6943 6.4767 25 6 -1.0536 2.7413 7.7053 26 6 -0.4640 3.2486 4.1280 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5401 0.9352 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6211 1.4026 -0.9314 32 1 4.3666 0.0352 0.2191 33 1 4.7140 0.4280 1.9201 34 1 8.0354 0.3349 0.3322 35 1 1.0218 3.1664 1.7942 36 1 0.4783 1.5427 2.2805 37 1 2.9448 3.7467 4.0295 38 1 1.6522 4.8395 3.4787 39 1 1.9651 3.7347 6.3070 40 1 2.3599 5.3918 5.7903 41 1 0.1150 5.2980 6.8383 42 1 -0.0006 5.7452 5.1196 43 1 -0.8515 3.6851 8.2116 44 1 -2.1208 2.6612 7.4982 45 1 -0.7445 1.9130 8.3428 46 1 -0.7171 4.0478 3.4312 47 1 -1.1123 2.3911 3.9482 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292313127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:26 Heat of formation + Delta-G solvation = -83.221143 kcal Electronic energy + Delta-G solvation = -24942.697021 eV Core-core repulsion = 21511.309364 eV Total energy + Delta-G solvation = -3431.387657 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.79288 -38.70824 -36.24125 -35.44288 -33.27685 -32.12478 -31.96284 -30.15992 -28.09994 -26.70155 -26.44263 -25.25926 -22.88312 -22.41101 -21.13360 -19.87336 -19.49587 -18.17260 -16.55238 -16.40109 -16.10239 -15.77365 -15.49611 -15.15485 -14.86312 -14.52150 -14.22414 -14.10176 -13.57035 -13.35597 -12.95908 -12.74938 -12.53973 -12.41298 -12.16825 -11.95356 -11.78255 -11.53310 -11.46417 -11.22145 -11.13428 -11.03043 -10.85268 -10.70466 -10.54997 -10.31742 -10.14814 -10.07046 -9.93077 -9.58026 -9.44841 -9.25315 -8.63527 -8.40311 -7.59695 -6.00887 -4.05265 2.42935 3.31654 3.39145 3.42797 3.56444 3.73949 4.09158 4.47762 4.72048 4.77340 4.90079 5.12702 5.16762 5.20651 5.24480 5.28393 5.33059 5.35026 5.36057 5.52591 5.54922 5.55209 5.65920 5.67646 5.73258 5.85838 5.88073 5.92626 5.99816 6.06637 6.07595 6.20776 6.34154 6.47141 6.49015 6.78603 6.81976 6.86488 6.91259 7.14131 7.19113 7.51024 7.62027 7.96327 8.28236 8.51259 8.95742 9.21318 9.60033 11.07180 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.004220 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.473905 B = 6633.073841 C = 7788.952393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.136 3.864 4 N -0.598 5.598 5 C 0.245 3.755 6 C -0.523 4.523 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.507 3.493 15 O -0.535 6.535 16 C -0.138 4.138 17 C -0.063 4.063 18 H 0.085 0.915 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.140 4.140 22 C 0.091 3.909 23 H 0.055 0.945 24 O -0.375 6.375 25 C 0.031 3.969 26 C -0.111 4.111 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.340 5.390 6.347 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.173 4.173 3 C 0.012 3.988 4 N -0.329 5.329 5 C 0.126 3.874 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.210 1.210 14 C 0.295 3.705 15 O -0.413 6.413 16 C -0.179 4.179 17 C -0.082 4.082 18 H 0.104 0.896 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.178 4.178 22 C 0.033 3.967 23 H 0.073 0.927 24 O -0.293 6.293 25 C -0.066 4.066 26 C -0.148 4.148 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.584 5.161 6.785 20.446 hybrid contribution 0.401 0.853 -0.363 1.010 sum -18.184 6.013 6.422 20.200 Atomic orbital electron populations 1.23740 0.95709 1.01454 1.02974 1.23569 0.96090 0.99992 0.97690 1.20563 0.92341 0.94015 0.91915 1.48232 1.14285 1.61244 1.09129 1.19262 0.75544 0.94465 0.98109 1.21482 0.93402 0.95973 1.45373 0.92443 1.24933 0.97922 0.95723 0.95553 1.69946 1.13968 1.20179 1.49324 0.86467 0.80687 0.82292 0.78118 1.19820 1.20909 1.21020 1.20366 0.88987 0.78368 0.82818 1.90632 1.55680 1.55590 1.39388 1.21821 0.95886 1.01545 0.98601 1.20773 0.93234 0.98905 0.95296 0.89629 1.21715 1.02314 0.96307 0.95404 1.21380 0.94580 1.00712 0.98123 1.22035 0.97168 0.97432 1.01142 1.22119 0.96697 0.87736 0.90134 0.92707 1.88006 1.64225 1.50060 1.27053 1.22749 0.95313 1.01536 0.87014 1.21719 0.97849 1.01211 0.94022 0.88802 0.88739 0.87192 0.91121 0.89199 0.95216 0.93891 0.92838 0.89996 0.89722 0.89199 0.93237 0.91288 0.92638 0.92483 0.91385 0.94404 0.94473 0.89867 0.90924 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.33 13.86 29.01 0.40 -1.93 16 2 C -0.15 -2.21 9.74 -36.03 -0.35 -2.56 16 3 C 0.14 2.22 5.65 -5.19 -0.03 2.19 16 4 N -0.60 -12.71 2.44 -176.43 -0.43 -13.14 16 5 C 0.25 6.46 5.16 -5.19 -0.03 6.44 16 6 C -0.52 -14.91 9.39 -34.44 -0.32 -15.24 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 10 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.51 10.61 7.39 -10.99 -0.08 10.52 16 15 O -0.54 -13.41 13.55 5.55 0.08 -13.34 16 16 C -0.14 -2.11 3.73 -27.88 -0.10 -2.21 16 17 C -0.06 -0.93 1.69 -90.62 -0.15 -1.09 16 18 H 0.09 1.51 7.49 -51.93 -0.39 1.12 16 19 C -0.12 -1.86 4.94 -26.73 -0.13 -1.99 16 20 C -0.11 -1.49 5.78 -26.73 -0.15 -1.65 16 21 C -0.14 -1.52 5.63 -26.73 -0.15 -1.67 16 22 C 0.09 0.99 2.92 -26.71 -0.08 0.91 16 23 H 0.05 0.49 7.78 -51.93 -0.40 0.09 16 24 O -0.37 -4.71 9.00 -35.23 -0.32 -5.02 16 25 C 0.03 0.28 10.82 101.05 1.09 1.37 16 26 C -0.11 -1.25 4.95 -26.71 -0.13 -1.38 16 27 H 0.09 0.97 8.06 -52.48 -0.42 0.55 16 28 H 0.09 0.95 7.84 -52.49 -0.41 0.54 16 29 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.07 0.97 6.09 -51.93 -0.32 0.66 16 31 H 0.09 1.53 8.07 -51.93 -0.42 1.11 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.08 1.11 7.40 -51.93 -0.38 0.72 16 36 H 0.08 1.15 7.53 -51.93 -0.39 0.76 16 37 H 0.09 1.76 5.95 -51.93 -0.31 1.45 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.04 7.68 -51.93 -0.40 0.64 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 44 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -32.73 372.49 -8.05 -40.79 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.39 Total: 0.82 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.32 Total: -6.64 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.31 Total: -39.24 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.24 Total: -18.36 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.73 -8.05 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292313127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.432 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds