Wall clock time and date at job start Tue Mar 31 2020 08:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99777 * 2 1 4 4 N 1.46502 * 109.47310 * 124.99780 * 3 2 1 5 5 C 1.46499 * 119.99658 * 89.99973 * 4 3 2 6 6 C 1.50701 * 109.46992 * 90.00121 * 5 4 3 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 C 1.34775 * 120.00005 * 270.00108 * 4 3 2 15 15 O 1.21285 * 119.99996 * 179.97438 * 14 4 3 16 16 C 1.50698 * 120.00318 * 0.02562 * 14 4 3 17 17 C 1.53001 * 109.47377 * 179.97438 * 16 14 4 18 18 H 1.09003 * 109.46598 * 304.99530 * 17 16 14 19 19 C 1.53001 * 109.47017 * 64.99815 * 17 16 14 20 20 C 1.53005 * 109.46887 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46808 * 299.99755 * 20 19 17 22 22 C 1.52999 * 109.47386 * 60.00102 * 21 20 19 23 23 H 1.09000 * 109.47547 * 179.97438 * 22 21 20 24 24 O 1.42900 * 109.46978 * 59.99692 * 22 21 20 25 25 C 1.42902 * 113.99794 * 89.99781 * 24 22 21 26 26 C 1.52999 * 109.47021 * 184.99780 * 17 16 14 27 27 H 1.08003 * 119.99690 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.00487 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00487 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46987 * 5.00034 * 3 2 1 31 31 H 1.08994 * 109.46951 * 245.00241 * 3 2 1 32 32 H 1.09002 * 109.47391 * 330.00112 * 5 4 3 33 33 H 1.09001 * 109.46813 * 210.00168 * 5 4 3 34 34 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.47054 * 299.99977 * 16 14 4 36 36 H 1.09003 * 109.47164 * 59.99309 * 16 14 4 37 37 H 1.09007 * 109.46736 * 300.00074 * 19 17 16 38 38 H 1.09002 * 109.47304 * 59.99972 * 19 17 16 39 39 H 1.08993 * 109.46915 * 59.99514 * 20 19 17 40 40 H 1.08997 * 109.46791 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.46814 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47087 * 300.00188 * 21 20 19 43 43 H 1.08998 * 109.47418 * 300.00200 * 25 24 22 44 44 H 1.09003 * 109.46549 * 60.00512 * 25 24 22 45 45 H 1.09000 * 109.47143 * 179.97438 * 25 24 22 46 46 H 1.09002 * 109.47087 * 299.99898 * 26 17 16 47 47 H 1.08995 * 109.47327 * 59.99878 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3589 0.8258 0.9694 6 6 5.2614 1.9482 0.5259 7 1 4.8585 2.9395 0.3798 8 6 6.6018 1.7098 0.3077 9 7 7.0925 0.5027 0.4861 10 14 7.7206 3.1012 -0.2414 11 1 6.9298 4.3517 -0.3681 12 1 8.7971 3.2963 0.7628 13 1 8.3246 2.7617 -1.5549 14 6 2.5935 1.8224 2.3213 15 8 3.3635 1.8443 3.2582 16 6 1.1890 2.3426 2.4882 17 6 0.9952 2.8366 3.9232 18 1 1.2482 2.0373 4.6198 19 6 1.9053 4.0404 4.1755 20 6 1.7118 4.5340 5.6107 21 6 0.2527 4.9459 5.8160 22 6 -0.6574 3.7422 5.5637 23 1 -1.6969 4.0355 5.7104 24 8 -0.3253 2.6943 6.4767 25 6 -1.0536 2.7413 7.7053 26 6 -0.4640 3.2486 4.1280 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5401 0.9352 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6211 1.4026 -0.9314 32 1 4.3666 0.0352 0.2191 33 1 4.7140 0.4280 1.9201 34 1 8.0354 0.3349 0.3322 35 1 1.0218 3.1664 1.7942 36 1 0.4783 1.5427 2.2805 37 1 2.9448 3.7467 4.0295 38 1 1.6522 4.8395 3.4787 39 1 1.9651 3.7347 6.3070 40 1 2.3599 5.3918 5.7903 41 1 0.1150 5.2980 6.8383 42 1 -0.0006 5.7452 5.1196 43 1 -0.8515 3.6851 8.2116 44 1 -2.1208 2.6612 7.4982 45 1 -0.7445 1.9130 8.3428 46 1 -0.7171 4.0478 3.4312 47 1 -1.1123 2.3911 3.9482 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292313127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:25 Heat of formation + Delta-G solvation = -103.107876 kcal Electronic energy + Delta-G solvation = -24943.559374 eV Core-core repulsion = 21511.309364 eV Total energy + Delta-G solvation = -3432.250011 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10229 -39.93174 -37.43654 -36.81908 -35.17567 -33.62661 -33.26590 -31.11643 -29.87829 -27.99849 -27.26313 -26.75609 -24.76239 -23.41723 -22.34524 -21.03374 -20.50335 -19.70588 -18.58635 -17.95511 -17.22389 -16.95359 -16.61755 -16.51920 -16.07442 -15.97100 -15.64497 -15.37179 -14.77666 -14.46368 -14.28792 -14.14850 -14.08406 -13.50404 -13.39149 -13.32033 -13.10533 -12.89267 -12.81489 -12.63971 -12.49741 -12.43306 -12.16979 -12.16103 -12.06821 -11.82020 -11.65186 -11.39377 -11.15728 -11.05822 -10.65693 -10.44040 -10.28748 -10.16956 -9.39582 -8.22371 -6.37432 1.34543 1.36870 1.37911 1.49650 1.94212 2.35433 2.57483 3.01248 3.06811 3.74781 3.78654 3.89243 4.03089 4.06877 4.19059 4.24913 4.33594 4.44468 4.51159 4.57476 4.59539 4.60626 4.63763 4.73291 4.76718 4.85603 4.87602 4.89756 4.92086 5.01205 5.03435 5.10123 5.14278 5.24574 5.34032 5.37558 5.42975 5.55340 5.60579 5.70226 5.76268 5.86412 5.88171 6.07428 6.45612 6.71258 6.86818 7.29442 7.58362 8.84912 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.004220 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.473905 B = 6633.073841 C = 7788.952393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.192 4.192 3 C 0.135 3.865 4 N -0.604 5.604 5 C 0.263 3.737 6 C -0.539 4.539 7 H 0.054 0.946 8 C 0.005 3.995 9 N -0.930 5.930 10 Si 0.969 3.031 11 H -0.265 1.265 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.494 3.506 15 O -0.591 6.591 16 C -0.122 4.122 17 C -0.059 4.059 18 H 0.046 0.954 19 C -0.119 4.119 20 C -0.109 4.109 21 C -0.134 4.134 22 C 0.086 3.914 23 H 0.085 0.915 24 O -0.408 6.408 25 C 0.025 3.975 26 C -0.104 4.104 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.017 0.983 33 H -0.008 1.008 34 H 0.266 0.734 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.990 7.662 5.388 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.212 4.212 3 C 0.013 3.987 4 N -0.334 5.334 5 C 0.141 3.859 6 C -0.578 4.578 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.570 5.570 10 Si 0.793 3.207 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.284 3.716 15 O -0.472 6.472 16 C -0.162 4.162 17 C -0.078 4.078 18 H 0.064 0.936 19 C -0.156 4.156 20 C -0.146 4.146 21 C -0.171 4.171 22 C 0.028 3.972 23 H 0.103 0.897 24 O -0.327 6.327 25 C -0.071 4.071 26 C -0.141 4.141 27 H 0.130 0.870 28 H 0.142 0.858 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.093 0.907 32 H 0.035 0.965 33 H 0.010 0.990 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.101 0.899 46 H 0.119 0.881 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.286 7.429 5.799 24.197 hybrid contribution 1.502 0.070 -0.026 1.504 sum -20.784 7.499 5.773 22.837 Atomic orbital electron populations 1.24067 0.94290 1.03662 0.97486 1.23247 0.97157 0.98049 1.02699 1.20793 0.91914 0.96640 0.89323 1.48270 1.13150 1.60857 1.11168 1.18659 0.78705 0.93815 0.94705 1.21744 0.94320 0.96153 1.45555 0.92746 1.25893 0.99572 0.98445 0.95417 1.70072 1.14565 1.22350 1.50055 0.85353 0.78267 0.79021 0.78077 1.18914 1.20865 1.19330 1.21522 0.91073 0.77328 0.81666 1.90613 1.57816 1.57588 1.41204 1.21830 0.91653 1.02972 0.99716 1.20689 0.95909 0.97241 0.93934 0.93580 1.21636 0.99534 0.97299 0.97162 1.21323 0.97339 0.99759 0.96203 1.22016 0.94519 0.98145 1.02455 1.22278 0.98159 0.87167 0.89568 0.89666 1.87989 1.65398 1.50960 1.28399 1.22897 0.96073 1.02061 0.86050 1.21724 0.94545 1.02663 0.95189 0.87036 0.85829 0.89481 0.87412 0.90668 0.96506 0.98986 0.92477 0.86947 0.87161 0.94423 0.91371 0.94023 0.92517 0.91392 0.89329 0.93564 0.92620 0.89923 0.88097 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 13.86 67.78 0.94 -2.08 16 2 C -0.19 -5.32 9.74 25.65 0.25 -5.07 16 3 C 0.14 4.34 5.65 85.63 0.48 4.83 16 4 N -0.60 -26.69 2.44 -830.50 -2.03 -28.71 16 5 C 0.26 14.84 5.16 85.63 0.44 15.28 16 6 C -0.54 -32.07 9.39 25.60 0.24 -31.83 16 7 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 8 C 0.01 0.32 5.46 84.66 0.46 0.78 16 9 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 10 Si 0.97 46.07 29.54 68.60 2.03 48.09 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 C 0.49 21.39 7.39 87.66 0.65 22.04 16 15 O -0.59 -31.98 13.55 -3.05 -0.04 -32.02 16 16 C -0.12 -3.49 3.73 29.85 0.11 -3.38 16 17 C -0.06 -1.68 1.69 -10.79 -0.02 -1.70 16 18 H 0.05 1.69 7.49 -2.39 -0.02 1.67 16 19 C -0.12 -3.71 4.94 30.60 0.15 -3.56 16 20 C -0.11 -2.95 5.78 30.60 0.18 -2.77 16 21 C -0.13 -2.53 5.63 30.59 0.17 -2.36 16 22 C 0.09 1.58 2.92 30.61 0.09 1.67 16 23 H 0.09 1.11 7.78 -2.39 -0.02 1.09 16 24 O -0.41 -9.70 9.00 -148.98 -1.34 -11.04 16 25 C 0.03 0.41 10.82 113.37 1.23 1.64 16 26 C -0.10 -1.96 4.95 30.61 0.15 -1.81 16 27 H 0.11 1.81 8.06 -2.91 -0.02 1.79 16 28 H 0.12 1.71 7.84 -2.91 -0.02 1.69 16 29 H 0.09 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.11 2.60 6.09 -2.39 -0.01 2.59 16 31 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 32 H 0.02 0.97 8.07 -2.39 -0.02 0.96 16 33 H -0.01 -0.52 7.42 -2.39 -0.02 -0.54 16 34 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.11 2.57 7.40 -2.38 -0.02 2.55 16 36 H 0.11 2.60 7.53 -2.39 -0.02 2.59 16 37 H 0.04 1.57 5.95 -2.38 -0.01 1.55 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.04 1.33 7.68 -2.39 -0.02 1.31 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.15 7.87 -2.39 -0.02 1.13 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.05 0.65 7.87 -2.39 -0.02 0.64 16 44 H 0.06 0.68 8.08 -2.39 -0.02 0.66 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -79.12 372.49 5.34 -73.78 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.91 Total: 16.02 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 5.53 Total: -8.33 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -1.74 Total: -86.49 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -1.38 Total: -43.07 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -79.12 5.34 -73.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292313127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.329 kcal (2) G-P(sol) polarization free energy of solvation -79.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds