Wall clock time and date at job start Tue Mar 31 2020 06:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99538 * 2 1 4 4 N 1.46507 * 109.47156 * 125.00087 * 3 2 1 5 5 C 1.46501 * 120.00095 * 270.00150 * 4 3 2 6 6 C 1.50696 * 109.47040 * 269.99761 * 5 4 3 7 7 H 1.07998 * 119.99918 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99899 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00481 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99985 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47243 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47210 * 120.00072 * 10 8 6 13 13 H 1.48502 * 109.47033 * 240.00048 * 10 8 6 14 14 C 1.34774 * 119.99654 * 89.99887 * 4 3 2 15 15 O 1.21282 * 119.99707 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00169 * 0.02562 * 14 4 3 17 17 C 1.53000 * 109.47131 * 179.97438 * 16 14 4 18 18 C 1.52999 * 109.47540 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47540 * 179.97438 * 18 17 16 20 20 C 1.53175 * 109.53913 * 65.44548 * 19 18 17 21 21 C 1.53092 * 109.16179 * 176.85000 * 20 19 18 22 22 O 1.42910 * 109.41107 * 302.39040 * 21 20 19 23 23 C 1.42900 * 114.09727 * 61.16189 * 22 21 20 24 24 C 1.53090 * 109.41229 * 298.83586 * 23 22 21 25 25 H 1.08006 * 119.99658 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.00396 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00824 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47310 * 5.00818 * 3 2 1 29 29 H 1.08992 * 109.47352 * 244.99689 * 3 2 1 30 30 H 1.09002 * 109.47189 * 29.99695 * 5 4 3 31 31 H 1.08999 * 109.47187 * 149.99447 * 5 4 3 32 32 H 0.96999 * 120.00568 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.46854 * 60.00454 * 16 14 4 34 34 H 1.08997 * 109.47397 * 299.99886 * 16 14 4 35 35 H 1.09009 * 109.47020 * 60.00053 * 17 16 14 36 36 H 1.09005 * 109.47341 * 300.00316 * 17 16 14 37 37 H 1.09005 * 109.46474 * 59.99952 * 18 17 16 38 38 H 1.09005 * 109.47030 * 300.00468 * 18 17 16 39 39 H 1.08997 * 109.61228 * 305.22843 * 19 18 17 40 40 H 1.09006 * 109.52647 * 296.75300 * 20 19 18 41 41 H 1.08998 * 109.52537 * 56.94192 * 20 19 18 42 42 H 1.08998 * 109.48147 * 182.40843 * 21 20 19 43 43 H 1.08997 * 109.48550 * 62.37144 * 21 20 19 44 44 H 1.09003 * 109.47953 * 178.86010 * 23 22 21 45 45 H 1.08995 * 109.49265 * 58.82602 * 23 22 21 46 46 H 1.09001 * 109.52724 * 297.70937 * 24 23 22 47 47 H 1.09000 * 109.52338 * 177.51272 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1315 5 6 2.5588 1.8650 2.4249 6 6 2.8441 3.3437 2.4805 7 1 3.3031 3.8372 1.6366 8 6 2.5182 4.0667 3.6083 9 7 1.9579 3.4661 4.6354 10 14 2.8712 5.8998 3.6769 11 1 3.5002 6.3309 2.4027 12 1 1.6005 6.6414 3.8780 13 1 3.7942 6.1842 4.8050 14 6 4.2496 0.8664 0.9823 15 8 5.0196 0.8882 1.9191 16 6 4.6972 0.3187 -0.3483 17 6 6.1537 -0.1389 -0.2477 18 6 6.6083 -0.6944 -1.5988 19 6 8.0650 -1.1514 -1.4984 20 6 8.1652 -2.3349 -0.5311 21 6 9.6116 -2.8351 -0.4971 22 8 10.0195 -3.1990 -1.8176 23 6 9.9916 -2.1206 -2.7548 24 6 8.5604 -1.5916 -2.8794 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8501 -0.9352 -0.0004 28 1 1.3585 2.1317 0.0897 29 1 2.6212 1.4028 -0.9313 30 1 1.4887 1.6967 2.5460 31 1 3.0989 1.3604 3.2260 32 1 1.7290 3.9747 5.4290 33 1 4.6125 1.0956 -1.1080 34 1 4.0681 -0.5281 -0.6229 35 1 6.2388 -0.9158 0.5122 36 1 6.7825 0.7081 0.0266 37 1 6.5233 0.0828 -2.3584 38 1 5.9795 -1.5414 -1.8736 39 1 8.6819 -0.3298 -1.1344 40 1 7.8667 -2.0155 0.4675 41 1 7.5099 -3.1378 -0.8687 42 1 9.6804 -3.7043 0.1570 43 1 10.2610 -2.0447 -0.1210 44 1 10.3340 -2.4750 -3.7270 45 1 10.6459 -1.3206 -2.4083 46 1 7.9130 -2.3795 -3.2644 47 1 8.5445 -0.7406 -3.5602 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292478746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:50 Heat of formation + Delta-G solvation = -91.612404 kcal Electronic energy + Delta-G solvation = -23910.051595 eV Core-core repulsion = 20478.300065 eV Total energy + Delta-G solvation = -3431.751530 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.70774 -39.06312 -36.07606 -35.52503 -33.27047 -32.50296 -32.01334 -31.28026 -28.57113 -27.10207 -25.42935 -24.28355 -23.67895 -22.46684 -20.99185 -20.17532 -19.90831 -18.26193 -16.52675 -16.42689 -16.22328 -16.13055 -15.62959 -15.45259 -14.94338 -14.69447 -14.49726 -14.21742 -14.05380 -13.58429 -13.11556 -12.86507 -12.67419 -12.49008 -12.23071 -11.77228 -11.70944 -11.64214 -11.56855 -11.42911 -11.21012 -11.02298 -10.91711 -10.86669 -10.67868 -10.58933 -10.41055 -10.29732 -10.18201 -9.67518 -9.61226 -9.18331 -8.83877 -8.43177 -7.65856 -6.03669 -4.08365 2.45171 3.29362 3.36647 3.40036 3.48663 3.67240 4.01976 4.43375 4.50316 4.53424 4.66130 4.81116 4.97412 5.07438 5.13061 5.17215 5.25925 5.26556 5.29601 5.31604 5.39961 5.45636 5.52142 5.56542 5.59864 5.67939 5.74065 5.78658 5.84067 5.92782 5.97955 5.99649 6.02510 6.17388 6.20942 6.38201 6.50899 6.79175 6.91799 6.98059 7.11400 7.46930 7.57885 7.93177 8.24899 8.45062 8.91853 9.13293 9.56815 11.04437 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.003075 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.569770 B = 9104.426658 C =10078.034620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.137 3.863 4 N -0.596 5.596 5 C 0.246 3.754 6 C -0.525 4.525 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.503 3.497 15 O -0.542 6.542 16 C -0.140 4.140 17 C -0.104 4.104 18 C -0.112 4.112 19 C -0.090 4.090 20 C -0.154 4.154 21 C 0.059 3.941 22 O -0.387 6.387 23 C 0.060 3.940 24 C -0.151 4.151 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.057 -11.023 -16.281 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.186 4.186 3 C 0.013 3.987 4 N -0.327 5.327 5 C 0.127 3.873 6 C -0.564 4.564 7 H 0.075 0.925 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.290 3.710 15 O -0.420 6.420 16 C -0.180 4.180 17 C -0.142 4.142 18 C -0.149 4.149 19 C -0.108 4.108 20 C -0.191 4.191 21 C -0.017 4.017 22 O -0.306 6.306 23 C -0.017 4.017 24 C -0.189 4.189 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.447 -11.138 -15.622 20.964 hybrid contribution -0.186 1.347 0.200 1.375 sum 8.261 -9.791 -15.422 20.049 Atomic orbital electron populations 1.23814 0.95868 1.01729 1.00765 1.23436 0.96376 0.99082 0.99739 1.20565 0.93108 0.95200 0.89850 1.48247 1.10666 1.60306 1.13466 1.19255 0.95317 0.93737 0.78968 1.21476 1.40295 0.93377 1.01206 0.92463 1.24940 0.95104 0.98746 0.95371 1.69947 1.42171 1.36060 1.05199 0.86455 0.77898 0.85022 0.78119 1.19818 1.20978 1.20879 1.20444 0.82195 0.78480 0.89881 1.90658 1.52595 1.56507 1.42263 1.21726 0.98002 1.01600 0.96709 1.21368 0.94631 1.01545 0.96641 1.21640 0.94929 1.00525 0.97848 1.21208 0.97228 0.97596 0.94815 1.22309 0.97445 0.98390 1.00976 1.22614 0.94493 1.00544 0.84089 1.87912 1.87727 1.35310 1.19611 1.22569 0.95892 0.90024 0.93202 1.22255 0.97377 1.01523 0.97711 0.88825 0.88305 0.87838 0.89609 0.90766 0.95103 0.93978 0.92802 0.89734 0.89855 0.91179 0.91302 0.91921 0.91981 0.90948 0.90102 0.91090 0.88962 0.93203 0.89152 0.93308 0.91075 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 14.32 29.02 0.42 -1.97 16 2 C -0.17 -2.36 9.74 -36.02 -0.35 -2.71 16 3 C 0.14 2.21 5.65 -5.19 -0.03 2.18 16 4 N -0.60 -12.60 2.44 -176.43 -0.43 -13.03 16 5 C 0.25 6.51 5.16 -5.20 -0.03 6.49 16 6 C -0.52 -14.97 9.39 -34.44 -0.32 -15.30 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 10 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.50 10.35 7.67 -10.99 -0.08 10.27 16 15 O -0.54 -13.61 15.56 5.56 0.09 -13.52 16 16 C -0.14 -2.00 4.25 -27.88 -0.12 -2.12 16 17 C -0.10 -1.37 4.27 -26.73 -0.11 -1.49 16 18 C -0.11 -1.11 4.69 -26.73 -0.13 -1.23 16 19 C -0.09 -0.85 2.27 -90.44 -0.21 -1.05 16 20 C -0.15 -1.49 5.10 -26.59 -0.14 -1.62 16 21 C 0.06 0.56 6.84 37.21 0.25 0.81 16 22 O -0.39 -4.13 10.77 -35.23 -0.38 -4.51 16 23 C 0.06 0.50 6.84 37.20 0.25 0.76 16 24 C -0.15 -1.24 5.42 -26.59 -0.14 -1.38 16 25 H 0.09 1.05 8.06 -52.48 -0.42 0.62 16 26 H 0.10 1.27 7.84 -52.48 -0.41 0.85 16 27 H 0.10 1.37 7.83 -52.49 -0.41 0.96 16 28 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 29 H 0.07 0.99 6.44 -51.93 -0.33 0.66 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.08 1.07 7.40 -51.93 -0.38 0.69 16 34 H 0.08 1.02 7.78 -51.93 -0.40 0.61 16 35 H 0.07 0.99 6.62 -51.92 -0.34 0.65 16 36 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.83 6.75 -51.93 -0.35 0.48 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -33.27 377.57 -8.61 -41.88 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.46 Total: -0.63 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -0.83 Total: -6.73 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.31 Total: -39.10 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.29 Total: -18.04 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.27 -8.61 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292478746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.732 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds