Wall clock time and date at job start Tue Mar 31 2020 06:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99538 * 2 1 4 4 N 1.46507 * 109.47156 * 125.00087 * 3 2 1 5 5 C 1.46501 * 120.00095 * 270.00150 * 4 3 2 6 6 C 1.50696 * 109.47040 * 269.99761 * 5 4 3 7 7 H 1.07998 * 119.99918 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99899 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00481 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99985 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47243 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47210 * 120.00072 * 10 8 6 13 13 H 1.48502 * 109.47033 * 240.00048 * 10 8 6 14 14 C 1.34774 * 119.99654 * 89.99887 * 4 3 2 15 15 O 1.21282 * 119.99707 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00169 * 0.02562 * 14 4 3 17 17 C 1.53000 * 109.47131 * 179.97438 * 16 14 4 18 18 C 1.52999 * 109.47540 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47540 * 179.97438 * 18 17 16 20 20 C 1.53175 * 109.53913 * 65.44548 * 19 18 17 21 21 C 1.53092 * 109.16179 * 176.85000 * 20 19 18 22 22 O 1.42910 * 109.41107 * 302.39040 * 21 20 19 23 23 C 1.42900 * 114.09727 * 61.16189 * 22 21 20 24 24 C 1.53090 * 109.41229 * 298.83586 * 23 22 21 25 25 H 1.08006 * 119.99658 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.00396 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00824 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47310 * 5.00818 * 3 2 1 29 29 H 1.08992 * 109.47352 * 244.99689 * 3 2 1 30 30 H 1.09002 * 109.47189 * 29.99695 * 5 4 3 31 31 H 1.08999 * 109.47187 * 149.99447 * 5 4 3 32 32 H 0.96999 * 120.00568 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.46854 * 60.00454 * 16 14 4 34 34 H 1.08997 * 109.47397 * 299.99886 * 16 14 4 35 35 H 1.09009 * 109.47020 * 60.00053 * 17 16 14 36 36 H 1.09005 * 109.47341 * 300.00316 * 17 16 14 37 37 H 1.09005 * 109.46474 * 59.99952 * 18 17 16 38 38 H 1.09005 * 109.47030 * 300.00468 * 18 17 16 39 39 H 1.08997 * 109.61228 * 305.22843 * 19 18 17 40 40 H 1.09006 * 109.52647 * 296.75300 * 20 19 18 41 41 H 1.08998 * 109.52537 * 56.94192 * 20 19 18 42 42 H 1.08998 * 109.48147 * 182.40843 * 21 20 19 43 43 H 1.08997 * 109.48550 * 62.37144 * 21 20 19 44 44 H 1.09003 * 109.47953 * 178.86010 * 23 22 21 45 45 H 1.08995 * 109.49265 * 58.82602 * 23 22 21 46 46 H 1.09001 * 109.52724 * 297.70937 * 24 23 22 47 47 H 1.09000 * 109.52338 * 177.51272 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1315 5 6 2.5588 1.8650 2.4249 6 6 2.8441 3.3437 2.4805 7 1 3.3031 3.8372 1.6366 8 6 2.5182 4.0667 3.6083 9 7 1.9579 3.4661 4.6354 10 14 2.8712 5.8998 3.6769 11 1 3.5002 6.3309 2.4027 12 1 1.6005 6.6414 3.8780 13 1 3.7942 6.1842 4.8050 14 6 4.2496 0.8664 0.9823 15 8 5.0196 0.8882 1.9191 16 6 4.6972 0.3187 -0.3483 17 6 6.1537 -0.1389 -0.2477 18 6 6.6083 -0.6944 -1.5988 19 6 8.0650 -1.1514 -1.4984 20 6 8.1652 -2.3349 -0.5311 21 6 9.6116 -2.8351 -0.4971 22 8 10.0195 -3.1990 -1.8176 23 6 9.9916 -2.1206 -2.7548 24 6 8.5604 -1.5916 -2.8794 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8501 -0.9352 -0.0004 28 1 1.3585 2.1317 0.0897 29 1 2.6212 1.4028 -0.9313 30 1 1.4887 1.6967 2.5460 31 1 3.0989 1.3604 3.2260 32 1 1.7290 3.9747 5.4290 33 1 4.6125 1.0956 -1.1080 34 1 4.0681 -0.5281 -0.6229 35 1 6.2388 -0.9158 0.5122 36 1 6.7825 0.7081 0.0266 37 1 6.5233 0.0828 -2.3584 38 1 5.9795 -1.5414 -1.8736 39 1 8.6819 -0.3298 -1.1344 40 1 7.8667 -2.0155 0.4675 41 1 7.5099 -3.1378 -0.8687 42 1 9.6804 -3.7043 0.1570 43 1 10.2610 -2.0447 -0.1210 44 1 10.3340 -2.4750 -3.7270 45 1 10.6459 -1.3206 -2.4083 46 1 7.9130 -2.3795 -3.2644 47 1 8.5445 -0.7406 -3.5602 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292478746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:50 Heat of formation + Delta-G solvation = -111.300575 kcal Electronic energy + Delta-G solvation = -23910.905338 eV Core-core repulsion = 20478.300065 eV Total energy + Delta-G solvation = -3432.605273 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82492 -40.29276 -37.32227 -36.73033 -35.15305 -33.65406 -33.55290 -31.97917 -30.11429 -28.50124 -26.85953 -25.58924 -24.51100 -23.94965 -22.03299 -21.07830 -20.92045 -19.77978 -18.64898 -17.75087 -17.30927 -17.02326 -16.92687 -16.71634 -16.18469 -15.93048 -15.61516 -15.51601 -14.93636 -14.73382 -14.47166 -14.17083 -14.10693 -13.79219 -13.34611 -13.24381 -13.00560 -12.90639 -12.74142 -12.63834 -12.59202 -12.35977 -12.25720 -12.19725 -12.14973 -11.79138 -11.65320 -11.58612 -11.15373 -11.11475 -10.66682 -10.58952 -10.36079 -10.30197 -9.44671 -8.23522 -6.38661 1.33670 1.35448 1.37452 1.49402 1.88070 2.34318 2.54033 2.99525 3.05831 3.63247 3.78335 3.83035 3.94421 4.08644 4.11658 4.17152 4.24114 4.26535 4.34517 4.43032 4.52516 4.56053 4.67263 4.72790 4.75119 4.79891 4.86443 4.87417 4.95452 5.01750 5.05841 5.07649 5.12788 5.16459 5.22220 5.23704 5.33074 5.47013 5.52335 5.56012 5.72053 5.76902 5.97464 6.05916 6.28539 6.69516 6.81373 7.27783 7.51612 8.83839 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.003075 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.569770 B = 9104.426658 C =10078.034620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.182 4.182 3 C 0.133 3.867 4 N -0.602 5.602 5 C 0.263 3.737 6 C -0.541 4.541 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.929 5.929 10 Si 0.969 3.031 11 H -0.266 1.266 12 H -0.269 1.269 13 H -0.282 1.282 14 C 0.491 3.509 15 O -0.600 6.600 16 C -0.125 4.125 17 C -0.099 4.099 18 C -0.101 4.101 19 C -0.092 4.092 20 C -0.152 4.152 21 C 0.058 3.942 22 O -0.405 6.405 23 C 0.053 3.947 24 C -0.144 4.144 25 H 0.116 0.884 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.018 0.982 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.050 0.950 44 H 0.106 0.894 45 H 0.052 0.948 46 H 0.072 0.928 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.869 -10.839 -19.095 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.201 4.201 3 C 0.011 3.989 4 N -0.332 5.332 5 C 0.142 3.858 6 C -0.580 4.580 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.793 3.207 11 H -0.190 1.190 12 H -0.194 1.194 13 H -0.208 1.208 14 C 0.281 3.719 15 O -0.482 6.482 16 C -0.164 4.164 17 C -0.138 4.138 18 C -0.138 4.138 19 C -0.110 4.110 20 C -0.190 4.190 21 C -0.019 4.019 22 O -0.324 6.324 23 C -0.023 4.023 24 C -0.182 4.182 25 H 0.134 0.866 26 H 0.115 0.885 27 H 0.134 0.866 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.036 0.964 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.124 0.876 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.234 -10.966 -18.491 23.021 hybrid contribution -0.167 1.251 1.105 1.678 sum 8.068 -9.715 -17.386 21.488 Atomic orbital electron populations 1.24043 0.95640 1.02782 0.98601 1.23352 0.96746 0.98397 1.01615 1.20826 0.92671 0.96154 0.89226 1.48267 1.12047 1.59933 1.12927 1.18659 0.93638 0.92739 0.80782 1.21742 1.40420 0.94440 1.01389 0.92804 1.25889 0.94662 1.03886 0.94860 1.70067 1.42906 1.38113 1.05840 0.85351 0.78227 0.78906 0.78219 1.18982 1.19370 1.20787 1.21644 0.81205 0.77385 0.91672 1.90625 1.54075 1.58731 1.44787 1.21745 0.98726 1.03059 0.92888 1.21318 0.93773 1.00282 0.98385 1.21555 0.95175 1.01263 0.95796 1.21211 0.97003 0.97115 0.95675 1.22273 0.97656 0.98606 1.00443 1.22653 0.94271 1.00909 0.84056 1.87887 1.87854 1.36535 1.20138 1.22758 0.96291 0.89778 0.93494 1.22206 0.97040 1.02092 0.96853 0.86587 0.88486 0.86583 0.90844 0.87205 0.96385 0.98861 0.92425 0.87077 0.86775 0.92861 0.93611 0.90334 0.90627 0.91769 0.91424 0.91047 0.88321 0.93131 0.87555 0.93008 0.90919 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 14.32 67.78 0.97 -3.14 16 2 C -0.18 -4.79 9.74 25.65 0.25 -4.54 16 3 C 0.13 4.13 5.65 85.63 0.48 4.61 16 4 N -0.60 -25.75 2.44 -830.49 -2.03 -27.78 16 5 C 0.26 14.55 5.16 85.63 0.44 14.99 16 6 C -0.54 -31.71 9.39 25.60 0.24 -31.47 16 7 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 8 C 0.01 0.34 5.46 84.65 0.46 0.80 16 9 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 10 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 C 0.49 20.44 7.67 87.66 0.67 21.11 16 15 O -0.60 -31.61 15.56 -3.04 -0.05 -31.65 16 16 C -0.12 -3.30 4.25 29.85 0.13 -3.17 16 17 C -0.10 -2.55 4.27 30.59 0.13 -2.42 16 18 C -0.10 -1.74 4.69 30.59 0.14 -1.59 16 19 C -0.09 -1.59 2.27 -10.68 -0.02 -1.61 16 20 C -0.15 -2.86 5.10 30.68 0.16 -2.71 16 21 C 0.06 1.06 6.84 72.01 0.49 1.55 16 22 O -0.40 -8.18 10.77 -148.98 -1.60 -9.78 16 23 C 0.05 0.79 6.84 72.01 0.49 1.29 16 24 C -0.14 -2.00 5.42 30.68 0.17 -1.84 16 25 H 0.12 2.25 8.06 -2.91 -0.02 2.22 16 26 H 0.10 2.33 7.84 -2.91 -0.02 2.31 16 27 H 0.12 2.77 7.83 -2.91 -0.02 2.75 16 28 H 0.07 2.44 7.72 -2.39 -0.02 2.42 16 29 H 0.11 2.58 6.44 -2.39 -0.02 2.56 16 30 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 31 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 32 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.11 2.41 7.40 -2.39 -0.02 2.39 16 34 H 0.11 2.38 7.78 -2.39 -0.02 2.36 16 35 H 0.05 1.53 6.62 -2.38 -0.02 1.52 16 36 H 0.05 1.37 8.10 -2.38 -0.02 1.35 16 37 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.44 6.75 -2.38 -0.02 1.42 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -75.80 377.57 4.75 -71.06 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.91 Total: 15.73 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 5.21 Total: -8.13 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -1.74 Total: -84.60 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -1.65 Total: -41.44 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -75.80 4.75 -71.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292478746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.245 kcal (2) G-P(sol) polarization free energy of solvation -75.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds