Wall clock time and date at job start Tue Mar 31 2020 08:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50706 * 119.99679 * 2 1 4 4 N 1.46498 * 109.47368 * 234.16215 * 3 2 1 5 5 C 1.46500 * 119.99717 * 74.95683 * 4 3 2 6 6 C 1.50694 * 109.47009 * 90.00356 * 5 4 3 7 7 H 1.08007 * 120.00192 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00230 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99809 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00471 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47036 * 59.99852 * 10 8 6 12 12 H 1.48492 * 109.47483 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47002 * 299.99952 * 10 8 6 14 14 C 1.34774 * 120.00316 * 254.96235 * 4 3 2 15 15 O 1.21279 * 120.00438 * 173.57486 * 14 4 3 16 16 C 1.50706 * 119.99569 * 353.56738 * 14 4 3 17 17 C 1.52996 * 110.43927 * 295.06923 * 16 14 4 18 18 C 1.53001 * 109.46951 * 304.79900 * 17 16 14 19 19 O 1.42904 * 109.47059 * 185.03665 * 18 17 16 20 20 C 1.42900 * 114.00144 * 184.98403 * 19 18 17 21 21 C 1.54890 * 110.48382 * 172.38164 * 16 14 4 22 22 C 1.54878 * 102.75512 * 279.26672 * 21 16 14 23 23 C 1.54272 * 104.19600 * 322.05750 * 22 21 16 24 24 C 1.53878 * 106.59414 * 23.61020 * 23 22 21 25 25 H 1.08002 * 119.99911 * 5.00486 * 1 2 3 26 26 H 1.08002 * 119.99685 * 185.00058 * 1 2 3 27 27 H 1.07990 * 120.00218 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47080 * 354.16652 * 3 2 1 29 29 H 1.09001 * 109.46613 * 114.16236 * 3 2 1 30 30 H 1.09002 * 109.46684 * 210.00317 * 5 4 3 31 31 H 1.08997 * 109.47434 * 329.99930 * 5 4 3 32 32 H 0.97000 * 120.00350 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.47110 * 64.79230 * 17 16 14 34 34 H 1.08992 * 109.47384 * 184.79774 * 17 16 14 35 35 H 1.09001 * 109.47440 * 305.03452 * 18 17 16 36 36 H 1.08998 * 109.47526 * 65.03463 * 18 17 16 37 37 H 1.09002 * 109.47185 * 304.99250 * 20 19 18 38 38 H 1.09003 * 109.46777 * 64.98337 * 20 19 18 39 39 H 1.08997 * 109.47568 * 184.98895 * 20 19 18 40 40 H 1.09006 * 110.75482 * 37.59031 * 21 16 14 41 41 H 1.09002 * 110.75441 * 160.94850 * 21 16 14 42 42 H 1.08998 * 110.49369 * 203.38129 * 22 21 16 43 43 H 1.09007 * 110.48600 * 80.73222 * 22 21 16 44 44 H 1.08997 * 110.03291 * 264.32876 * 23 22 21 45 45 H 1.09003 * 110.03501 * 142.88900 * 23 22 21 46 46 H 1.09000 * 110.02900 * 240.71193 * 24 23 22 47 47 H 1.08998 * 110.03534 * 119.28608 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0080 1.3239 -1.1197 5 6 2.5204 1.5288 -2.4859 6 6 2.5092 3.0027 -2.7994 7 1 2.8326 3.7156 -2.0553 8 6 2.0862 3.4413 -4.0363 9 7 1.6930 2.5732 -4.9426 10 14 2.0717 5.2684 -4.4247 11 1 3.4485 5.8112 -4.3032 12 1 1.5776 5.4761 -5.8095 13 1 1.1767 5.9703 -3.4699 14 6 4.3255 1.1524 -0.8930 15 8 5.0933 1.0512 -1.8263 16 6 4.8445 1.0867 0.5204 17 6 4.6315 2.4250 1.2305 18 6 5.2778 3.5449 0.4126 19 8 5.1817 4.7762 1.1315 20 6 5.6566 5.9117 0.4055 21 6 6.3436 0.6973 0.5297 22 6 6.2982 -0.8415 0.3594 23 6 5.0772 -1.2787 1.1947 24 6 4.1529 -0.0527 1.2970 25 1 -0.5400 0.9318 -0.0816 26 1 -0.5400 -0.9318 0.0815 27 1 1.8500 -0.9352 -0.0004 28 1 1.3598 2.1310 -0.1044 29 1 2.6094 1.4095 0.9377 30 1 3.1767 1.0131 -3.1870 31 1 1.5096 1.1308 -2.5745 32 1 1.3951 2.8817 -5.8127 33 1 3.5632 2.6177 1.3297 34 1 5.0874 2.3880 2.2198 35 1 6.3271 3.3076 0.2371 36 1 4.7624 3.6409 -0.5430 37 1 6.6797 5.7306 0.0761 38 1 5.0198 6.0799 -0.4631 39 1 5.6325 6.7908 1.0494 40 1 6.8689 1.1630 -0.3042 41 1 6.8069 0.9674 1.4786 42 1 7.2093 -1.2955 0.7491 43 1 6.1575 -1.1053 -0.6889 44 1 5.3970 -1.5892 2.1894 45 1 4.5577 -2.0974 0.6966 46 1 4.0242 0.2317 2.3413 47 1 3.1849 -0.2764 0.8485 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293623379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:36 Heat of formation + Delta-G solvation = -61.373663 kcal Electronic energy + Delta-G solvation = -26113.868028 eV Core-core repulsion = 22683.427749 eV Total energy + Delta-G solvation = -3430.440279 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52782 -37.56545 -36.75120 -35.83505 -33.14180 -32.60512 -31.85094 -28.94966 -27.91514 -27.13296 -25.68324 -25.48084 -23.32228 -22.48951 -20.72737 -20.36868 -19.78914 -17.88609 -16.59083 -16.33595 -16.18879 -15.73298 -15.65967 -14.95648 -14.71819 -14.51733 -14.35579 -14.20616 -13.91778 -13.23425 -12.97845 -12.86236 -12.51675 -12.21616 -12.03641 -11.62934 -11.45992 -11.26436 -11.18876 -11.11258 -11.02785 -10.96249 -10.80571 -10.77663 -10.57951 -10.54224 -10.35974 -10.17596 -10.15293 -9.66240 -9.40622 -9.09988 -8.72428 -8.43526 -7.64160 -6.04528 -4.09348 2.47691 3.29562 3.34053 3.34967 3.44335 3.85827 4.03010 4.43073 4.61829 4.76539 4.88781 5.12201 5.26825 5.28000 5.29615 5.37405 5.41983 5.46870 5.50916 5.56986 5.61026 5.63937 5.66538 5.78456 5.81592 5.83440 5.93024 6.02215 6.04156 6.06933 6.11818 6.20687 6.24444 6.27493 6.38257 6.41684 6.58100 6.83509 6.96027 7.14139 7.34350 7.47676 7.57957 7.92544 8.24086 8.45507 8.89803 9.11698 9.55566 11.03436 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.006824 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.653064 B = 4102.310200 C = 5269.947265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.168 4.168 3 C 0.120 3.880 4 N -0.592 5.592 5 C 0.248 3.752 6 C -0.526 4.526 7 H 0.055 0.945 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.523 3.477 15 O -0.540 6.540 16 C -0.083 4.083 17 C -0.104 4.104 18 C 0.056 3.944 19 O -0.395 6.395 20 C 0.032 3.968 21 C -0.102 4.102 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.137 4.137 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -3.392 14.967 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.187 4.187 3 C -0.004 4.004 4 N -0.322 5.322 5 C 0.128 3.872 6 C -0.565 4.565 7 H 0.074 0.926 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.721 3.279 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.309 3.691 15 O -0.417 6.417 16 C -0.087 4.087 17 C -0.141 4.141 18 C -0.020 4.020 19 O -0.314 6.314 20 C -0.064 4.064 21 C -0.140 4.140 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.174 4.174 25 H 0.118 0.882 26 H 0.112 0.888 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.332 -3.442 14.424 15.448 hybrid contribution -0.073 1.061 -0.675 1.260 sum 4.259 -2.381 13.748 14.588 Atomic orbital electron populations 1.23832 0.95834 1.01837 1.00185 1.23370 0.96248 0.98940 1.00188 1.21053 0.93088 0.95193 0.91059 1.48122 1.05074 1.69541 1.09470 1.19232 0.95074 0.96594 0.76250 1.21383 1.43895 0.92159 0.99053 0.92630 1.24911 0.95250 0.97785 0.96001 1.69925 1.43842 1.33770 1.05655 0.86628 0.78423 0.85378 0.77428 1.20271 1.21128 1.20199 1.20019 0.82623 0.76690 0.89733 1.90636 1.55884 1.50203 1.44965 1.21612 0.97550 0.95378 0.94122 1.21671 1.02215 0.91360 0.98864 1.22646 1.00010 0.83641 0.95751 1.87767 1.85392 1.15813 1.42466 1.22705 0.98123 0.88528 0.97063 1.22426 0.93720 0.95961 1.01890 1.22339 0.97352 0.95634 1.00801 1.22117 0.96411 0.97596 0.99831 1.22797 1.00517 0.93848 1.00249 0.88209 0.88770 0.87363 0.90335 0.88808 0.93895 0.95008 0.92692 0.90133 0.90445 0.93172 0.91844 0.94265 0.93724 0.90005 0.90170 0.91299 0.91990 0.90993 0.92011 0.92081 0.90966 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 14.32 29.01 0.42 -2.00 16 2 C -0.17 -2.48 8.25 -36.02 -0.30 -2.77 16 3 C 0.12 1.98 4.69 -5.19 -0.02 1.95 16 4 N -0.59 -12.36 2.48 -176.43 -0.44 -12.80 16 5 C 0.25 6.45 5.15 -5.20 -0.03 6.43 16 6 C -0.53 -14.73 9.39 -34.44 -0.32 -15.06 16 7 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 10 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.52 10.65 4.95 -10.98 -0.05 10.59 16 15 O -0.54 -13.22 14.92 5.56 0.08 -13.14 16 16 C -0.08 -1.27 0.27 -154.00 -0.04 -1.31 16 17 C -0.10 -1.50 4.28 -26.73 -0.11 -1.62 16 18 C 0.06 0.93 5.45 37.16 0.20 1.14 16 19 O -0.40 -6.42 10.70 -35.23 -0.38 -6.80 16 20 C 0.03 0.45 11.01 101.05 1.11 1.56 16 21 C -0.10 -1.45 4.74 -24.74 -0.12 -1.57 16 22 C -0.12 -1.64 6.54 -25.08 -0.16 -1.81 16 23 C -0.12 -1.44 6.80 -25.61 -0.17 -1.61 16 24 C -0.14 -1.72 4.59 -25.61 -0.12 -1.84 16 25 H 0.10 1.35 7.84 -52.49 -0.41 0.94 16 26 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.11 1.52 6.89 -52.49 -0.36 1.16 16 28 H 0.08 1.37 7.80 -51.93 -0.40 0.96 16 29 H 0.09 1.32 3.01 -51.93 -0.16 1.17 16 30 H 0.04 1.27 7.34 -51.93 -0.38 0.89 16 31 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.08 1.17 5.57 -51.93 -0.29 0.88 16 34 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.05 0.80 7.22 -51.93 -0.37 0.43 16 36 H 0.06 1.29 7.33 -51.93 -0.38 0.90 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.31 7.09 -51.93 -0.37 0.94 16 41 H 0.07 0.82 8.02 -51.93 -0.42 0.41 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.13 7.91 -51.93 -0.41 0.72 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 47 H 0.09 1.21 2.87 -51.93 -0.15 1.06 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -32.04 363.87 -7.20 -39.24 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.85 Total: 3.28 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 0.18 Total: -6.24 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.30 Total: -38.59 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.29 Total: -19.93 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.04 -7.20 -39.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293623379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.130 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds