Wall clock time and date at job start Tue Mar 31 2020 08:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50706 * 119.99679 * 2 1 4 4 N 1.46498 * 109.47368 * 234.16215 * 3 2 1 5 5 C 1.46500 * 119.99717 * 74.95683 * 4 3 2 6 6 C 1.50694 * 109.47009 * 90.00356 * 5 4 3 7 7 H 1.08007 * 120.00192 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00230 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99809 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00471 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47036 * 59.99852 * 10 8 6 12 12 H 1.48492 * 109.47483 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47002 * 299.99952 * 10 8 6 14 14 C 1.34774 * 120.00316 * 254.96235 * 4 3 2 15 15 O 1.21279 * 120.00438 * 173.57486 * 14 4 3 16 16 C 1.50706 * 119.99569 * 353.56738 * 14 4 3 17 17 C 1.52996 * 110.43927 * 295.06923 * 16 14 4 18 18 C 1.53001 * 109.46951 * 304.79900 * 17 16 14 19 19 O 1.42904 * 109.47059 * 185.03665 * 18 17 16 20 20 C 1.42900 * 114.00144 * 184.98403 * 19 18 17 21 21 C 1.54890 * 110.48382 * 172.38164 * 16 14 4 22 22 C 1.54878 * 102.75512 * 279.26672 * 21 16 14 23 23 C 1.54272 * 104.19600 * 322.05750 * 22 21 16 24 24 C 1.53878 * 106.59414 * 23.61020 * 23 22 21 25 25 H 1.08002 * 119.99911 * 5.00486 * 1 2 3 26 26 H 1.08002 * 119.99685 * 185.00058 * 1 2 3 27 27 H 1.07990 * 120.00218 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47080 * 354.16652 * 3 2 1 29 29 H 1.09001 * 109.46613 * 114.16236 * 3 2 1 30 30 H 1.09002 * 109.46684 * 210.00317 * 5 4 3 31 31 H 1.08997 * 109.47434 * 329.99930 * 5 4 3 32 32 H 0.97000 * 120.00350 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.47110 * 64.79230 * 17 16 14 34 34 H 1.08992 * 109.47384 * 184.79774 * 17 16 14 35 35 H 1.09001 * 109.47440 * 305.03452 * 18 17 16 36 36 H 1.08998 * 109.47526 * 65.03463 * 18 17 16 37 37 H 1.09002 * 109.47185 * 304.99250 * 20 19 18 38 38 H 1.09003 * 109.46777 * 64.98337 * 20 19 18 39 39 H 1.08997 * 109.47568 * 184.98895 * 20 19 18 40 40 H 1.09006 * 110.75482 * 37.59031 * 21 16 14 41 41 H 1.09002 * 110.75441 * 160.94850 * 21 16 14 42 42 H 1.08998 * 110.49369 * 203.38129 * 22 21 16 43 43 H 1.09007 * 110.48600 * 80.73222 * 22 21 16 44 44 H 1.08997 * 110.03291 * 264.32876 * 23 22 21 45 45 H 1.09003 * 110.03501 * 142.88900 * 23 22 21 46 46 H 1.09000 * 110.02900 * 240.71193 * 24 23 22 47 47 H 1.08998 * 110.03534 * 119.28608 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0080 1.3239 -1.1197 5 6 2.5204 1.5288 -2.4859 6 6 2.5092 3.0027 -2.7994 7 1 2.8326 3.7156 -2.0553 8 6 2.0862 3.4413 -4.0363 9 7 1.6930 2.5732 -4.9426 10 14 2.0717 5.2684 -4.4247 11 1 3.4485 5.8112 -4.3032 12 1 1.5776 5.4761 -5.8095 13 1 1.1767 5.9703 -3.4699 14 6 4.3255 1.1524 -0.8930 15 8 5.0933 1.0512 -1.8263 16 6 4.8445 1.0867 0.5204 17 6 4.6315 2.4250 1.2305 18 6 5.2778 3.5449 0.4126 19 8 5.1817 4.7762 1.1315 20 6 5.6566 5.9117 0.4055 21 6 6.3436 0.6973 0.5297 22 6 6.2982 -0.8415 0.3594 23 6 5.0772 -1.2787 1.1947 24 6 4.1529 -0.0527 1.2970 25 1 -0.5400 0.9318 -0.0816 26 1 -0.5400 -0.9318 0.0815 27 1 1.8500 -0.9352 -0.0004 28 1 1.3598 2.1310 -0.1044 29 1 2.6094 1.4095 0.9377 30 1 3.1767 1.0131 -3.1870 31 1 1.5096 1.1308 -2.5745 32 1 1.3951 2.8817 -5.8127 33 1 3.5632 2.6177 1.3297 34 1 5.0874 2.3880 2.2198 35 1 6.3271 3.3076 0.2371 36 1 4.7624 3.6409 -0.5430 37 1 6.6797 5.7306 0.0761 38 1 5.0198 6.0799 -0.4631 39 1 5.6325 6.7908 1.0494 40 1 6.8689 1.1630 -0.3042 41 1 6.8069 0.9674 1.4786 42 1 7.2093 -1.2955 0.7491 43 1 6.1575 -1.1053 -0.6889 44 1 5.3970 -1.5892 2.1894 45 1 4.5577 -2.0974 0.6966 46 1 4.0242 0.2317 2.3413 47 1 3.1849 -0.2764 0.8485 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293623379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:36 Heat of formation + Delta-G solvation = -81.249659 kcal Electronic energy + Delta-G solvation = -26114.729916 eV Core-core repulsion = 22683.427749 eV Total energy + Delta-G solvation = -3431.302167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.92890 -38.88103 -38.07893 -37.40509 -35.10423 -33.89409 -33.36071 -30.34004 -29.25719 -28.64931 -27.02610 -26.75869 -25.26355 -23.70907 -22.25724 -21.44138 -20.96396 -19.38774 -18.62259 -17.66848 -17.56733 -17.29631 -17.00857 -16.43505 -16.19553 -15.88996 -15.71317 -15.54054 -15.16576 -14.72628 -14.34417 -14.18665 -13.98918 -13.88632 -13.32618 -13.26768 -12.98852 -12.83032 -12.67798 -12.58333 -12.37495 -12.27587 -12.24850 -12.17511 -11.96734 -11.83020 -11.78014 -11.68492 -11.42471 -11.19647 -10.69969 -10.66883 -10.35503 -10.29498 -9.42962 -8.24610 -6.39241 1.30685 1.32038 1.34869 1.42540 1.85232 2.30801 2.47838 2.69868 3.04502 3.46010 3.62029 3.70233 3.96646 4.06173 4.08841 4.17085 4.25949 4.32956 4.35431 4.43937 4.48330 4.51391 4.57511 4.59176 4.71102 4.75839 4.79694 4.89349 4.96515 4.99198 5.03316 5.06288 5.07981 5.11003 5.16027 5.23755 5.30630 5.39663 5.51826 5.55014 5.70538 5.75496 5.96348 6.05458 6.09259 6.68303 6.80893 7.26299 7.49867 8.82334 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.006824 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.653064 B = 4102.310200 C = 5269.947265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.185 4.185 3 C 0.118 3.882 4 N -0.597 5.597 5 C 0.267 3.733 6 C -0.539 4.539 7 H 0.051 0.949 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.960 3.040 11 H -0.277 1.277 12 H -0.277 1.277 13 H -0.260 1.260 14 C 0.516 3.484 15 O -0.595 6.595 16 C -0.076 4.076 17 C -0.099 4.099 18 C 0.061 3.939 19 O -0.400 6.400 20 C 0.025 3.975 21 C -0.101 4.101 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.136 4.136 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.065 0.935 29 H 0.124 0.876 30 H -0.006 1.006 31 H 0.019 0.981 32 H 0.267 0.733 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.048 0.952 38 H 0.025 0.975 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.032 0.968 44 H 0.095 0.905 45 H 0.056 0.944 46 H 0.110 0.890 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 -3.039 18.437 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.204 4.204 3 C -0.003 4.003 4 N -0.326 5.326 5 C 0.146 3.854 6 C -0.578 4.578 7 H 0.069 0.931 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.784 3.216 11 H -0.203 1.203 12 H -0.201 1.201 13 H -0.185 1.185 14 C 0.305 3.695 15 O -0.476 6.476 16 C -0.079 4.079 17 C -0.136 4.136 18 C -0.016 4.016 19 O -0.319 6.319 20 C -0.071 4.071 21 C -0.139 4.139 22 C -0.163 4.163 23 C -0.154 4.154 24 C -0.173 4.173 25 H 0.115 0.885 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.084 0.916 29 H 0.141 0.859 30 H 0.012 0.988 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.134 0.866 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.067 0.933 38 H 0.044 0.956 39 H 0.131 0.869 40 H 0.066 0.934 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.051 0.949 44 H 0.114 0.886 45 H 0.075 0.925 46 H 0.128 0.872 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.230 -3.092 17.939 18.689 hybrid contribution -0.040 0.951 -1.804 2.040 sum 4.190 -2.140 16.136 16.808 Atomic orbital electron populations 1.24061 0.95477 1.02928 0.97846 1.23284 0.96683 0.98190 1.02263 1.21294 0.92515 0.96041 0.90472 1.48095 1.06430 1.69475 1.08616 1.18609 0.93075 0.95110 0.78651 1.21630 1.43836 0.92972 0.99365 0.93090 1.25810 0.94664 1.02663 0.95754 1.70049 1.44503 1.35989 1.06088 0.85583 0.78562 0.79593 0.77844 1.20283 1.20144 1.18489 1.21064 0.81750 0.74902 0.91796 1.90600 1.57121 1.52454 1.47394 1.21626 0.98536 0.97263 0.90523 1.21717 1.02393 0.89601 0.99890 1.22544 0.99763 0.84985 0.94306 1.87750 1.85649 1.16011 1.42503 1.22911 0.98139 0.88888 0.97147 1.22474 0.92670 0.96379 1.02383 1.22331 0.99602 0.95253 0.99077 1.22126 0.95175 0.96981 1.01163 1.22869 0.99913 0.92861 1.01651 0.88497 0.86248 0.86515 0.91630 0.85867 0.98832 0.96339 0.92427 0.90071 0.86608 0.92885 0.96650 0.93286 0.95590 0.86885 0.93383 0.87690 0.89455 0.94919 0.88600 0.92502 0.87195 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 14.32 67.78 0.97 -3.23 16 2 C -0.19 -5.28 8.25 25.64 0.21 -5.07 16 3 C 0.12 3.90 4.69 85.64 0.40 4.30 16 4 N -0.60 -26.06 2.48 -830.51 -2.06 -28.12 16 5 C 0.27 14.84 5.15 85.63 0.44 15.28 16 6 C -0.54 -31.68 9.39 25.60 0.24 -31.44 16 7 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 10 Si 0.96 45.55 29.54 68.60 2.03 47.58 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 14 C 0.52 21.91 4.95 87.66 0.43 22.35 16 15 O -0.59 -31.42 14.92 -3.03 -0.05 -31.47 16 16 C -0.08 -2.23 0.27 -51.85 -0.01 -2.25 16 17 C -0.10 -2.65 4.28 30.59 0.13 -2.52 16 18 C 0.06 2.02 5.45 71.98 0.39 2.41 16 19 O -0.40 -12.46 10.70 -148.98 -1.59 -14.05 16 20 C 0.03 0.67 11.01 113.37 1.25 1.92 16 21 C -0.10 -2.75 4.74 31.88 0.15 -2.60 16 22 C -0.13 -3.17 6.54 31.67 0.21 -2.96 16 23 C -0.12 -2.39 6.80 31.32 0.21 -2.18 16 24 C -0.14 -2.99 4.59 31.32 0.14 -2.85 16 25 H 0.10 2.51 7.84 -2.91 -0.02 2.49 16 26 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 27 H 0.12 3.14 6.89 -2.92 -0.02 3.12 16 28 H 0.07 2.31 7.80 -2.39 -0.02 2.29 16 29 H 0.12 3.26 3.01 -2.39 -0.01 3.25 16 30 H -0.01 -0.42 7.34 -2.39 -0.02 -0.43 16 31 H 0.02 1.06 7.89 -2.39 -0.02 1.04 16 32 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.08 2.17 5.57 -2.38 -0.01 2.16 16 34 H 0.12 2.31 8.08 -2.39 -0.02 2.29 16 35 H 0.05 1.71 7.22 -2.39 -0.02 1.69 16 36 H 0.02 0.65 7.33 -2.39 -0.02 0.63 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 1.61 7.09 -2.38 -0.02 1.59 16 41 H 0.10 2.10 8.02 -2.39 -0.02 2.08 16 42 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.03 1.06 7.91 -2.38 -0.02 1.05 16 44 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.11 1.67 7.84 -2.39 -0.02 1.65 16 47 H 0.08 2.03 2.87 -2.39 -0.01 2.02 16 Total: -1.00 -75.62 363.87 5.18 -70.44 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.93 Total: 20.14 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 5.63 Total: -7.76 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -1.77 Total: -84.88 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.64 Total: -45.52 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.62 5.18 -70.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293623379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.812 kcal (2) G-P(sol) polarization free energy of solvation -75.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds