Wall clock time and date at job start Tue Mar 31 2020 07:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99820 * 2 1 4 4 N 1.46498 * 109.47122 * 123.19629 * 3 2 1 5 5 C 1.46500 * 119.99954 * 275.87109 * 4 3 2 6 6 C 1.50699 * 109.46975 * 270.00270 * 5 4 3 7 7 H 1.07998 * 120.00041 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00183 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99996 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00029 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47280 * 89.99946 * 10 8 6 12 12 H 1.48503 * 109.47251 * 209.99554 * 10 8 6 13 13 H 1.48494 * 109.47487 * 330.00015 * 10 8 6 14 14 C 1.34771 * 120.00373 * 95.86669 * 4 3 2 15 15 O 1.21277 * 120.00219 * 184.20254 * 14 4 3 16 16 C 1.50703 * 119.99819 * 4.20693 * 14 4 3 17 17 C 1.53004 * 112.90647 * 289.50657 * 16 14 4 18 18 C 1.52994 * 109.47064 * 312.59545 * 17 16 14 19 19 O 1.42903 * 109.46920 * 185.18355 * 18 17 16 20 20 C 1.42909 * 113.99639 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.46675 * 180.02562 * 20 19 18 22 22 C 1.53787 * 113.61549 * 60.75721 * 16 14 4 23 23 C 1.53778 * 87.08068 * 89.11732 * 22 16 14 24 24 C 1.53779 * 87.08322 * 25.43149 * 23 22 16 25 25 H 1.08001 * 119.99954 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99844 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00092 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47277 * 3.19156 * 3 2 1 29 29 H 1.08998 * 109.47031 * 243.19639 * 3 2 1 30 30 H 1.09007 * 109.47041 * 29.99500 * 5 4 3 31 31 H 1.08994 * 109.47567 * 150.00114 * 5 4 3 32 32 H 0.96997 * 120.00261 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.46870 * 72.59846 * 17 16 14 34 34 H 1.09006 * 109.46862 * 192.59353 * 17 16 14 35 35 H 1.09000 * 109.47164 * 305.18463 * 18 17 16 36 36 H 1.09003 * 109.47303 * 65.18433 * 18 17 16 37 37 H 1.09001 * 109.46584 * 299.99227 * 20 19 18 38 38 H 1.08999 * 109.47456 * 59.99793 * 20 19 18 39 39 H 1.09000 * 109.46809 * 179.97438 * 21 20 19 40 40 H 1.09005 * 109.47131 * 299.99677 * 21 20 19 41 41 H 1.08999 * 109.47409 * 59.99689 * 21 20 19 42 42 H 1.08997 * 113.61173 * 334.56746 * 22 16 14 43 43 H 1.08997 * 113.61534 * 203.67046 * 22 16 14 44 44 H 1.08990 * 113.61503 * 139.98371 * 23 22 16 45 45 H 1.09005 * 113.61058 * 270.88451 * 23 22 16 46 46 H 1.09004 * 113.61176 * 89.11406 * 24 23 22 47 47 H 1.09001 * 113.62021 * 219.93371 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9626 1.3500 1.1558 5 6 2.4568 1.7826 2.4609 6 6 2.6208 3.2747 2.5937 7 1 3.0585 3.8438 1.7868 8 6 2.2132 3.9133 3.7456 9 7 1.6807 3.2203 4.7284 10 14 2.4172 5.7628 3.9105 11 1 1.2000 6.4427 3.3991 12 1 2.6165 6.1135 5.3397 13 1 3.5973 6.2028 3.1237 14 6 4.2549 0.9931 1.0185 15 8 4.9804 0.9569 1.9897 16 6 4.7985 0.6392 -0.3417 17 6 4.2603 -0.6920 -0.8702 18 6 4.3653 -1.7553 0.2248 19 8 3.9762 -3.0243 -0.3047 20 6 4.0381 -4.0929 0.6422 21 6 3.6031 -5.3963 -0.0307 22 6 4.7072 1.7883 -1.3597 23 6 6.0928 2.2335 -0.8631 24 6 6.3269 0.7715 -0.4479 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3566 2.1328 0.0572 29 1 2.6465 1.3881 -0.9172 30 1 1.4012 1.5243 2.5453 31 1 3.0173 1.2837 3.2514 32 1 1.3936 3.6696 5.5387 33 1 3.2168 -0.5720 -1.1614 34 1 4.8456 -1.0026 -1.7358 35 1 5.3941 -1.8100 0.5806 36 1 3.7081 -1.4902 1.0530 37 1 5.0601 -4.1962 1.0070 38 1 3.3739 -3.8760 1.4788 39 1 3.6507 -6.2114 0.6914 40 1 2.5812 -5.2932 -0.3959 41 1 4.2677 -5.6129 -0.8670 42 1 3.9143 2.5035 -1.1408 43 1 4.7019 1.4534 -2.3970 44 1 6.7543 2.5723 -1.6604 45 1 6.0534 2.9254 -0.0217 46 1 6.7645 0.1586 -1.2359 47 1 6.8430 0.6658 0.5064 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293638921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:09 Heat of formation + Delta-G solvation = -64.316907 kcal Electronic energy + Delta-G solvation = -25590.765494 eV Core-core repulsion = 22160.197586 eV Total energy + Delta-G solvation = -3430.567908 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03035 -39.04617 -38.47761 -37.30524 -35.13141 -33.71606 -33.42429 -31.35453 -29.77609 -27.18048 -26.85112 -26.18711 -24.99427 -23.71354 -22.90329 -21.89788 -20.88264 -19.25769 -18.62059 -17.77900 -17.67995 -17.26210 -17.09339 -16.51189 -16.31366 -15.80836 -15.40490 -15.30813 -15.12352 -14.94854 -14.27828 -14.16108 -13.87481 -13.59008 -13.36056 -13.26598 -13.18250 -12.99973 -12.90454 -12.76406 -12.57775 -12.45798 -12.24251 -12.20966 -12.08429 -11.95113 -11.80196 -11.68676 -11.22104 -11.09201 -10.66323 -10.64677 -10.46319 -10.30608 -9.47653 -8.24204 -6.39380 1.29070 1.34561 1.37485 1.47774 1.79657 2.32093 2.45948 2.59511 3.05364 3.43456 3.57723 3.63412 3.88528 3.98406 4.05886 4.07593 4.15232 4.17951 4.21379 4.38644 4.40455 4.45331 4.48875 4.55672 4.77884 4.82234 4.84185 4.87646 4.90968 4.96954 5.00184 5.01748 5.05196 5.08954 5.17622 5.19425 5.24805 5.26485 5.49970 5.51765 5.70434 5.74236 5.94482 6.04289 6.14857 6.67840 6.77400 7.26078 7.46091 8.83159 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014792 B = 0.004981 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.467902 B = 5619.637326 C = 6320.475508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.189 4.189 3 C 0.123 3.877 4 N -0.592 5.592 5 C 0.265 3.735 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.967 3.033 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.272 1.272 14 C 0.525 3.475 15 O -0.597 6.597 16 C -0.106 4.106 17 C -0.094 4.094 18 C 0.067 3.933 19 O -0.393 6.393 20 C 0.045 3.955 21 C -0.142 4.142 22 C -0.118 4.118 23 C -0.142 4.142 24 C -0.116 4.116 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.018 0.982 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.018 0.982 37 H 0.051 0.949 38 H 0.038 0.962 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.135 0.865 44 H 0.102 0.898 45 H 0.044 0.956 46 H 0.124 0.876 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -10.572 -17.203 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.208 4.208 3 C 0.001 3.999 4 N -0.321 5.321 5 C 0.144 3.856 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.792 3.208 11 H -0.187 1.187 12 H -0.207 1.207 13 H -0.196 1.196 14 C 0.314 3.686 15 O -0.478 6.478 16 C -0.109 4.109 17 C -0.131 4.131 18 C -0.010 4.010 19 O -0.313 6.313 20 C -0.031 4.031 21 C -0.199 4.199 22 C -0.155 4.155 23 C -0.179 4.179 24 C -0.153 4.153 25 H 0.119 0.881 26 H 0.133 0.867 27 H 0.129 0.871 28 H 0.092 0.908 29 H 0.136 0.864 30 H 0.036 0.964 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.153 0.847 44 H 0.120 0.880 45 H 0.063 0.937 46 H 0.142 0.858 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.164 -10.587 -16.696 20.021 hybrid contribution -0.038 0.955 1.670 1.925 sum 3.126 -9.632 -15.026 18.120 Atomic orbital electron populations 1.24051 0.95494 1.02808 0.98140 1.23444 0.96881 0.98400 1.02025 1.21106 0.93531 0.95940 0.89281 1.48093 1.09193 1.63610 1.11221 1.18657 0.92960 0.93814 0.80169 1.21679 1.40914 0.93368 1.02051 0.92739 1.25862 0.94497 1.03706 0.94971 1.70063 1.42186 1.37863 1.06697 0.85417 0.78953 0.79043 0.77430 1.18698 1.20682 1.19642 1.20624 0.81519 0.75771 0.90725 1.90610 1.58787 1.55631 1.42770 1.21948 0.99018 0.97804 0.92140 1.21641 1.04067 0.89419 0.97974 1.22394 0.98094 0.84121 0.96383 1.87800 1.88872 1.16480 1.38166 1.22674 1.00208 0.88172 0.92072 1.21725 1.02253 0.94158 1.01803 1.23203 0.97655 0.95088 0.99568 1.22769 0.98128 0.96147 1.00852 1.22969 0.92429 0.97683 1.02248 0.88132 0.86749 0.87069 0.90757 0.86440 0.96406 0.98921 0.92433 0.89040 0.87030 0.93800 0.96380 0.93084 0.94388 0.89378 0.91971 0.91344 0.91442 0.84653 0.87964 0.93727 0.85793 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.41 14.32 67.78 0.97 -3.44 16 2 C -0.19 -5.59 8.54 25.64 0.22 -5.37 16 3 C 0.12 4.09 4.87 85.63 0.42 4.51 16 4 N -0.59 -26.05 2.44 -830.52 -2.03 -28.08 16 5 C 0.27 14.82 5.21 85.63 0.45 15.27 16 6 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 7 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.50 5.46 84.65 0.46 0.97 16 9 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 10 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 14 C 0.52 22.55 4.90 87.66 0.43 22.98 16 15 O -0.60 -32.01 15.57 -3.02 -0.05 -32.06 16 16 C -0.11 -3.11 0.36 -52.40 -0.02 -3.13 16 17 C -0.09 -2.30 4.49 30.59 0.14 -2.16 16 18 C 0.07 1.98 4.82 71.98 0.35 2.33 16 19 O -0.39 -10.59 10.34 -148.98 -1.54 -12.14 16 20 C 0.05 1.05 6.66 71.98 0.48 1.52 16 21 C -0.14 -2.39 10.28 71.98 0.74 -1.65 16 22 C -0.12 -2.74 5.82 31.12 0.18 -2.56 16 23 C -0.14 -3.66 7.80 31.12 0.24 -3.41 16 24 C -0.12 -3.08 7.11 31.12 0.22 -2.86 16 25 H 0.10 2.61 7.84 -2.91 -0.02 2.58 16 26 H 0.11 2.54 8.06 -2.91 -0.02 2.51 16 27 H 0.11 3.30 5.53 -2.91 -0.02 3.29 16 28 H 0.07 2.57 7.76 -2.39 -0.02 2.56 16 29 H 0.12 3.12 3.64 -2.39 -0.01 3.11 16 30 H 0.02 1.03 8.07 -2.38 -0.02 1.01 16 31 H -0.01 -0.48 7.37 -2.39 -0.02 -0.49 16 32 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.09 2.14 4.41 -2.39 -0.01 2.13 16 34 H 0.11 2.06 7.92 -2.38 -0.02 2.04 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.02 0.65 6.87 -2.39 -0.02 0.64 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 1.78 6.41 -2.39 -0.02 1.76 16 43 H 0.14 1.97 8.10 -2.39 -0.02 1.95 16 44 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 46 H 0.12 2.31 7.94 -2.38 -0.02 2.29 16 47 H 0.05 1.64 7.37 -2.39 -0.02 1.63 16 Total: -1.00 -75.58 371.07 5.14 -70.44 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.93 Total: 19.82 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.51 Total: -8.54 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -1.74 Total: -84.93 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -1.59 Total: -44.19 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -75.58 5.14 -70.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293638921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.127 kcal (2) G-P(sol) polarization free energy of solvation -75.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds