Wall clock time and date at job start Tue Mar 31 2020 07:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 C 1.52998 * 109.47160 * 239.99774 * 2 1 3 5 5 C 1.53002 * 109.47463 * 174.99967 * 4 2 1 6 6 H 1.08998 * 109.46859 * 305.00666 * 5 4 2 7 7 O 1.42900 * 109.46828 * 65.00043 * 5 4 2 8 8 C 1.50695 * 109.47388 * 185.00358 * 5 4 2 9 9 C 1.34515 * 125.79319 * 100.00077 * 8 5 4 10 10 C 1.41376 * 106.84242 * 179.73499 * 9 8 5 11 11 C 1.34516 * 106.84089 * 0.02562 * 10 9 8 12 12 O 1.34298 * 108.42070 * 0.02562 * 11 10 9 13 13 N 1.46896 * 109.46989 * 120.00127 * 2 1 3 14 14 C 1.46897 * 111.00212 * 274.99804 * 13 2 1 15 15 C 1.52996 * 109.47491 * 179.97438 * 14 13 2 16 16 C 1.52993 * 109.47199 * 299.99989 * 15 14 13 17 17 C 1.52997 * 109.47071 * 60.00213 * 15 14 13 18 18 C 1.53002 * 109.47228 * 179.97438 * 15 14 13 19 19 C 1.50694 * 109.47022 * 180.02562 * 18 15 14 20 20 H 1.08001 * 120.00399 * 0.02562 * 19 18 15 21 21 C 1.37888 * 119.99896 * 180.02562 * 19 18 15 22 22 N 1.31512 * 119.99575 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99817 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46961 * 90.00127 * 23 21 19 25 25 H 1.48500 * 109.47147 * 209.99532 * 23 21 19 26 26 H 1.48495 * 109.47297 * 329.99655 * 23 21 19 27 27 H 1.09006 * 109.47098 * 60.00098 * 1 2 3 28 28 H 1.09004 * 109.47029 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47146 * 299.99989 * 1 2 3 30 30 H 1.09002 * 109.47122 * 55.00248 * 4 2 1 31 31 H 1.09001 * 109.47674 * 295.00708 * 4 2 1 32 32 H 0.96699 * 113.99993 * 60.00600 * 7 5 4 33 33 H 1.08003 * 126.57278 * 359.76766 * 9 8 5 34 34 H 1.08003 * 126.57866 * 179.97438 * 10 9 8 35 35 H 1.08002 * 125.78796 * 180.02562 * 11 10 9 36 36 H 1.00906 * 111.00343 * 38.95412 * 13 2 1 37 37 H 1.09007 * 109.46988 * 300.00425 * 14 13 2 38 38 H 1.09004 * 109.47363 * 59.99925 * 14 13 2 39 39 H 1.08998 * 109.47268 * 60.00226 * 16 15 14 40 40 H 1.09002 * 109.46935 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.47281 * 299.99868 * 16 15 14 42 42 H 1.09003 * 109.47418 * 59.99513 * 17 15 14 43 43 H 1.09002 * 109.47508 * 179.97438 * 17 15 14 44 44 H 1.09001 * 109.47127 * 300.00107 * 17 15 14 45 45 H 1.09000 * 109.47441 * 300.00177 * 18 15 14 46 46 H 1.08998 * 109.47089 * 60.00232 * 18 15 14 47 47 H 0.97001 * 119.99540 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 1 3.8571 0.4357 -1.2677 7 8 4.1392 -1.3165 -0.2102 8 6 4.0570 -1.2158 -2.6043 9 6 4.4042 -0.5323 -3.7096 10 6 4.8088 -1.4865 -4.6711 11 6 4.6840 -2.6962 -4.0962 12 8 4.2274 -2.5262 -2.8447 13 7 2.0196 -0.6925 1.1994 14 6 2.0825 0.2225 2.3469 15 6 2.5950 -0.5332 3.5744 16 6 1.6451 -1.6889 3.8952 17 6 3.9920 -1.0864 3.2862 18 6 2.6610 0.4200 4.7694 19 6 3.1664 -0.3243 5.9783 20 1 3.4160 -1.3723 5.9020 21 6 3.3102 0.3327 7.1821 22 7 3.0067 1.6090 7.2749 23 14 3.9360 -0.5900 8.6808 24 1 5.4170 -0.4970 8.7366 25 1 3.3558 0.0096 9.9092 26 1 3.5327 -2.0162 8.5881 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6054 -0.2618 -2.1370 31 1 1.7516 -1.7715 -1.2056 32 1 3.9206 -2.2582 -0.1872 33 1 4.3793 0.5398 -3.8376 34 1 5.1514 -1.2833 -5.6750 35 1 4.9123 -3.6435 -4.5620 36 1 1.4495 -1.4980 1.4100 37 1 2.7589 1.0462 2.1182 38 1 1.0871 0.6163 2.5526 39 1 1.5985 -2.3679 3.0438 40 1 2.0105 -2.2276 4.7695 41 1 0.6498 -1.2948 4.1006 42 1 4.6688 -0.2630 3.0577 43 1 4.3574 -1.6244 4.1609 44 1 3.9455 -1.7654 2.4348 45 1 3.3380 1.2431 4.5407 46 1 1.6659 0.8145 4.9749 47 1 3.1082 2.0713 8.1216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305698286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:52 Heat of formation + Delta-G solvation = -53.990013 kcal Electronic energy + Delta-G solvation = -24584.862043 eV Core-core repulsion = 21154.741943 eV Total energy + Delta-G solvation = -3430.120100 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.72890 -38.48682 -36.95629 -35.10475 -33.23016 -32.42410 -31.23813 -29.75034 -27.85376 -26.79460 -26.18855 -25.06403 -23.71143 -22.27018 -21.93891 -20.71744 -20.56245 -18.02651 -17.72521 -16.35745 -16.14659 -15.97086 -15.69855 -15.10514 -14.58369 -14.47267 -14.23717 -13.98815 -13.29636 -13.04053 -13.00659 -12.90168 -12.74727 -12.64737 -12.17236 -11.93088 -11.89899 -11.61498 -11.60811 -11.27416 -10.91704 -10.87693 -10.75076 -10.65982 -10.38544 -10.16745 -10.11165 -10.02603 -9.99734 -9.56088 -8.90910 -8.74731 -8.62771 -8.25896 -7.83823 -5.90739 -3.90142 1.55781 2.43418 2.80742 3.37223 3.43478 3.46344 4.33510 4.40509 4.54273 4.64309 4.75798 4.84853 4.95907 5.08582 5.19457 5.33351 5.42177 5.45220 5.58545 5.60607 5.73989 5.76058 5.79509 5.87507 5.91251 5.91471 6.06299 6.09021 6.17465 6.31069 6.38201 6.46650 6.63532 6.83737 6.93073 6.95373 6.96936 7.32914 7.38471 7.42140 7.54607 7.76971 7.82944 7.83456 7.95298 8.10584 8.55753 9.15554 9.72235 11.21067 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.003076 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.972738 B = 9099.553548 C = 9655.417190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.202 3.798 6 H 0.118 0.882 7 O -0.515 6.515 8 C -0.035 4.035 9 C -0.214 4.214 10 C -0.215 4.215 11 C -0.047 4.047 12 O -0.172 6.172 13 N -0.664 5.664 14 C 0.075 3.925 15 C -0.056 4.056 16 C -0.127 4.127 17 C -0.110 4.110 18 C 0.033 3.967 19 C -0.504 4.504 20 H 0.059 0.941 21 C 0.053 3.947 22 N -0.899 5.899 23 Si 0.887 3.113 24 H -0.282 1.282 25 H -0.289 1.289 26 H -0.275 1.275 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.373 0.627 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.200 0.800 36 H 0.334 0.666 37 H 0.063 0.937 38 H 0.018 0.982 39 H 0.033 0.967 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.014 0.986 46 H 0.010 0.990 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 -6.241 -23.359 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.024 4.024 3 H 0.094 0.906 4 C -0.174 4.174 5 C 0.141 3.859 6 H 0.136 0.864 7 O -0.318 6.318 8 C -0.086 4.086 9 C -0.233 4.233 10 C -0.234 4.234 11 C -0.114 4.114 12 O -0.068 6.068 13 N -0.295 5.295 14 C -0.054 4.054 15 C -0.057 4.057 16 C -0.185 4.185 17 C -0.168 4.168 18 C -0.004 4.004 19 C -0.542 4.542 20 H 0.077 0.923 21 C -0.147 4.147 22 N -0.539 5.539 23 Si 0.715 3.285 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.200 1.200 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.220 0.780 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.217 0.783 36 H 0.153 0.847 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.032 0.968 46 H 0.029 0.971 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.873 -5.653 -23.037 23.737 hybrid contribution -0.826 -0.599 0.561 1.164 sum -1.699 -6.252 -22.477 23.392 Atomic orbital electron populations 1.22522 0.97692 1.01884 1.02075 1.21463 0.91914 0.98061 0.90997 0.90578 1.22357 0.95058 1.01975 0.98022 1.20372 0.91640 0.95770 0.78096 0.86406 1.86756 1.74083 1.25486 1.45490 1.23902 1.04203 0.80900 0.99579 1.21607 1.07228 1.00778 0.93665 1.21828 1.07501 0.92602 1.01461 1.24026 1.03939 1.00313 0.83157 1.83997 1.65311 1.26749 1.30713 1.60667 1.55977 1.09485 1.03348 1.22063 0.98219 0.94957 0.90132 1.20591 0.95078 0.95913 0.94091 1.21756 0.98598 0.97954 1.00163 1.21542 0.95541 0.99981 0.99713 1.19121 0.96651 0.93753 0.90888 1.21259 1.42507 0.96318 0.94117 0.92322 1.25020 0.95963 0.94842 0.98856 1.69971 1.49420 1.08983 1.25526 0.86676 0.79015 0.80015 0.82779 1.20802 1.21470 1.19977 0.92620 0.92688 0.92309 0.91125 0.91279 0.78011 0.83559 0.83636 0.78302 0.84735 0.91821 0.96420 0.94855 0.91936 0.94383 0.94339 0.93386 0.93249 0.96783 0.97139 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.16 37.16 0.34 -1.52 16 2 C 0.09 0.95 2.59 -67.72 -0.18 0.78 16 3 H 0.08 0.90 7.80 -51.93 -0.40 0.49 16 4 C -0.14 -1.29 4.64 -26.73 -0.12 -1.41 16 5 C 0.20 2.14 3.43 -27.88 -0.10 2.05 16 6 H 0.12 1.24 8.13 -51.93 -0.42 0.82 16 7 O -0.52 -6.55 11.52 -37.48 -0.43 -6.98 16 8 C -0.03 -0.38 6.18 -35.63 -0.22 -0.60 16 9 C -0.21 -2.18 10.80 -39.71 -0.43 -2.61 16 10 C -0.21 -1.97 10.91 -39.70 -0.43 -2.40 16 11 C -0.05 -0.42 12.09 29.42 0.36 -0.06 16 12 O -0.17 -1.90 10.58 3.47 0.04 -1.86 16 13 N -0.66 -8.80 3.78 -106.73 -0.40 -9.20 16 14 C 0.07 1.27 4.44 -3.83 -0.02 1.25 16 15 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 16 C -0.13 -2.36 7.89 37.15 0.29 -2.07 16 17 C -0.11 -2.17 8.06 37.16 0.30 -1.88 16 18 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 19 C -0.50 -13.96 7.65 -34.44 -0.26 -14.23 16 20 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 21 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 22 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 23 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.54 8.13 -51.93 -0.42 0.11 16 29 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.37 4.08 8.97 45.56 0.41 4.49 16 33 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 35 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.33 4.33 6.51 -39.29 -0.26 4.08 16 37 H 0.06 1.15 8.06 -51.92 -0.42 0.73 16 38 H 0.02 0.31 7.44 -51.93 -0.39 -0.08 16 39 H 0.03 0.52 6.57 -51.93 -0.34 0.17 16 40 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 1.02 6.61 -51.93 -0.34 0.67 16 44 H 0.05 0.86 7.48 -51.93 -0.39 0.47 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -31.08 372.90 -7.60 -38.68 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.37 Total: 5.10 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -0.77 Total: -21.74 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.33 Total: -35.71 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.40 Total: -8.84 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.08 -7.60 -38.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305698286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.306 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds