Wall clock time and date at job start Tue Mar 31 2020 07:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 C 1.52998 * 109.47160 * 239.99774 * 2 1 3 5 5 C 1.53002 * 109.47463 * 174.99967 * 4 2 1 6 6 H 1.08998 * 109.46859 * 305.00666 * 5 4 2 7 7 O 1.42900 * 109.46828 * 65.00043 * 5 4 2 8 8 C 1.50695 * 109.47388 * 185.00358 * 5 4 2 9 9 C 1.34515 * 125.79319 * 100.00077 * 8 5 4 10 10 C 1.41376 * 106.84242 * 179.73499 * 9 8 5 11 11 C 1.34516 * 106.84089 * 0.02562 * 10 9 8 12 12 O 1.34298 * 108.42070 * 0.02562 * 11 10 9 13 13 N 1.46896 * 109.46989 * 120.00127 * 2 1 3 14 14 C 1.46897 * 111.00212 * 274.99804 * 13 2 1 15 15 C 1.52996 * 109.47491 * 179.97438 * 14 13 2 16 16 C 1.52993 * 109.47199 * 299.99989 * 15 14 13 17 17 C 1.52997 * 109.47071 * 60.00213 * 15 14 13 18 18 C 1.53002 * 109.47228 * 179.97438 * 15 14 13 19 19 C 1.50694 * 109.47022 * 180.02562 * 18 15 14 20 20 H 1.08001 * 120.00399 * 0.02562 * 19 18 15 21 21 C 1.37888 * 119.99896 * 180.02562 * 19 18 15 22 22 N 1.31512 * 119.99575 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99817 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46961 * 90.00127 * 23 21 19 25 25 H 1.48500 * 109.47147 * 209.99532 * 23 21 19 26 26 H 1.48495 * 109.47297 * 329.99655 * 23 21 19 27 27 H 1.09006 * 109.47098 * 60.00098 * 1 2 3 28 28 H 1.09004 * 109.47029 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47146 * 299.99989 * 1 2 3 30 30 H 1.09002 * 109.47122 * 55.00248 * 4 2 1 31 31 H 1.09001 * 109.47674 * 295.00708 * 4 2 1 32 32 H 0.96699 * 113.99993 * 60.00600 * 7 5 4 33 33 H 1.08003 * 126.57278 * 359.76766 * 9 8 5 34 34 H 1.08003 * 126.57866 * 179.97438 * 10 9 8 35 35 H 1.08002 * 125.78796 * 180.02562 * 11 10 9 36 36 H 1.00906 * 111.00343 * 38.95412 * 13 2 1 37 37 H 1.09007 * 109.46988 * 300.00425 * 14 13 2 38 38 H 1.09004 * 109.47363 * 59.99925 * 14 13 2 39 39 H 1.08998 * 109.47268 * 60.00226 * 16 15 14 40 40 H 1.09002 * 109.46935 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.47281 * 299.99868 * 16 15 14 42 42 H 1.09003 * 109.47418 * 59.99513 * 17 15 14 43 43 H 1.09002 * 109.47508 * 179.97438 * 17 15 14 44 44 H 1.09001 * 109.47127 * 300.00107 * 17 15 14 45 45 H 1.09000 * 109.47441 * 300.00177 * 18 15 14 46 46 H 1.08998 * 109.47089 * 60.00232 * 18 15 14 47 47 H 0.97001 * 119.99540 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 1 3.8571 0.4357 -1.2677 7 8 4.1392 -1.3165 -0.2102 8 6 4.0570 -1.2158 -2.6043 9 6 4.4042 -0.5323 -3.7096 10 6 4.8088 -1.4865 -4.6711 11 6 4.6840 -2.6962 -4.0962 12 8 4.2274 -2.5262 -2.8447 13 7 2.0196 -0.6925 1.1994 14 6 2.0825 0.2225 2.3469 15 6 2.5950 -0.5332 3.5744 16 6 1.6451 -1.6889 3.8952 17 6 3.9920 -1.0864 3.2862 18 6 2.6610 0.4200 4.7694 19 6 3.1664 -0.3243 5.9783 20 1 3.4160 -1.3723 5.9020 21 6 3.3102 0.3327 7.1821 22 7 3.0067 1.6090 7.2749 23 14 3.9360 -0.5900 8.6808 24 1 5.4170 -0.4970 8.7366 25 1 3.3558 0.0096 9.9092 26 1 3.5327 -2.0162 8.5881 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6054 -0.2618 -2.1370 31 1 1.7516 -1.7715 -1.2056 32 1 3.9206 -2.2582 -0.1872 33 1 4.3793 0.5398 -3.8376 34 1 5.1514 -1.2833 -5.6750 35 1 4.9123 -3.6435 -4.5620 36 1 1.4495 -1.4980 1.4100 37 1 2.7589 1.0462 2.1182 38 1 1.0871 0.6163 2.5526 39 1 1.5985 -2.3679 3.0438 40 1 2.0105 -2.2276 4.7695 41 1 0.6498 -1.2948 4.1006 42 1 4.6688 -0.2630 3.0577 43 1 4.3574 -1.6244 4.1609 44 1 3.9455 -1.7654 2.4348 45 1 3.3380 1.2431 4.5407 46 1 1.6659 0.8145 4.9749 47 1 3.1082 2.0713 8.1216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305698286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:51 Heat of formation + Delta-G solvation = -73.629457 kcal Electronic energy + Delta-G solvation = -24585.713673 eV Core-core repulsion = 21154.741943 eV Total energy + Delta-G solvation = -3430.971730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.44886 -39.64407 -38.21830 -36.32059 -34.45829 -33.94499 -32.25267 -30.82970 -28.82999 -28.57076 -27.78972 -26.56392 -24.78827 -23.94810 -22.66015 -21.64585 -21.31370 -19.46185 -18.70343 -18.29641 -17.17579 -16.82672 -16.70253 -16.35967 -16.12862 -15.51385 -15.39471 -15.35750 -14.52282 -14.41802 -14.22665 -13.95047 -13.81495 -13.70697 -13.39029 -13.34909 -13.17102 -12.76427 -12.70013 -12.68023 -12.49152 -12.36172 -12.24700 -12.18711 -11.99401 -11.82865 -11.66052 -11.30557 -10.92473 -10.80213 -10.77308 -10.63862 -10.48603 -9.35850 -8.96804 -8.12326 -6.18937 0.83755 1.41027 1.42018 1.52403 1.73326 2.12168 2.44974 3.21453 3.37276 3.58468 3.79064 4.02071 4.15178 4.19968 4.24665 4.31974 4.34277 4.38049 4.49644 4.53993 4.58610 4.79535 4.86689 4.89217 4.92628 4.98896 5.02978 5.07099 5.11625 5.18013 5.20832 5.27541 5.30799 5.32946 5.34754 5.56796 5.61386 5.63989 5.65738 5.78265 5.96156 5.97146 6.23105 6.27091 6.43171 6.73770 6.96729 7.01692 7.48127 9.00188 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.003076 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.972738 B = 9099.553548 C = 9655.417190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.087 3.913 3 H 0.067 0.933 4 C -0.121 4.121 5 C 0.204 3.796 6 H 0.113 0.887 7 O -0.536 6.536 8 C -0.053 4.053 9 C -0.224 4.224 10 C -0.229 4.229 11 C -0.047 4.047 12 O -0.187 6.187 13 N -0.656 5.656 14 C 0.090 3.910 15 C -0.052 4.052 16 C -0.119 4.119 17 C -0.098 4.098 18 C 0.039 3.961 19 C -0.511 4.511 20 H 0.065 0.935 21 C -0.006 4.006 22 N -0.939 5.939 23 Si 0.956 3.044 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.262 1.262 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.379 0.621 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.234 0.766 36 H 0.339 0.661 37 H 0.047 0.953 38 H 0.011 0.989 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.033 0.967 42 H 0.020 0.980 43 H 0.029 0.971 44 H 0.076 0.924 45 H -0.021 1.021 46 H -0.018 1.018 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -8.300 -25.071 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.023 4.023 3 H 0.085 0.915 4 C -0.160 4.160 5 C 0.143 3.857 6 H 0.131 0.869 7 O -0.340 6.340 8 C -0.103 4.103 9 C -0.243 4.243 10 C -0.248 4.248 11 C -0.114 4.114 12 O -0.083 6.083 13 N -0.287 5.287 14 C -0.039 4.039 15 C -0.052 4.052 16 C -0.177 4.177 17 C -0.155 4.155 18 C 0.002 3.998 19 C -0.550 4.550 20 H 0.083 0.917 21 C -0.203 4.203 22 N -0.581 5.581 23 Si 0.781 3.219 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.186 1.186 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.227 0.773 33 H 0.174 0.826 34 H 0.183 0.817 35 H 0.250 0.750 36 H 0.159 0.841 37 H 0.066 0.934 38 H 0.029 0.971 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.048 0.952 44 H 0.095 0.905 45 H -0.002 1.002 46 H 0.000 1.000 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.023 -7.729 -24.770 25.968 hybrid contribution -0.764 0.070 0.994 1.256 sum -1.787 -7.659 -23.776 25.043 Atomic orbital electron populations 1.22453 0.96621 1.02487 1.02082 1.21507 0.92722 0.97646 0.90473 0.91490 1.22218 0.94203 1.02080 0.97450 1.20352 0.92216 0.95348 0.77734 0.86893 1.86719 1.74722 1.26136 1.46462 1.23871 1.05488 0.81162 0.99781 1.21925 1.06818 1.01654 0.93893 1.22170 1.07740 0.92535 1.02347 1.24774 1.02546 1.01762 0.82320 1.83983 1.65746 1.26784 1.31812 1.60585 1.56675 1.08952 1.02533 1.21703 0.97170 0.94702 0.90328 1.20449 0.96172 0.95514 0.93097 1.21656 0.97583 0.97546 1.00873 1.21418 0.94652 0.99534 0.99876 1.19016 0.93825 0.93820 0.93144 1.21639 1.41747 0.96711 0.94866 0.91651 1.25937 0.96345 0.95683 1.02306 1.70116 1.50884 1.10735 1.26368 0.85579 0.78441 0.79163 0.78690 1.20222 1.21213 1.18582 0.90988 0.91758 0.93958 0.89607 0.90779 0.77315 0.82576 0.81672 0.75010 0.84077 0.93441 0.97107 0.91115 0.93847 0.94752 0.96052 0.95170 0.90489 1.00224 1.00011 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 9.16 71.98 0.66 -2.60 16 2 C 0.09 1.78 2.59 44.92 0.12 1.89 16 3 H 0.07 1.52 7.80 -2.39 -0.02 1.51 16 4 C -0.12 -2.05 4.64 30.59 0.14 -1.90 16 5 C 0.20 4.08 3.43 29.85 0.10 4.18 16 6 H 0.11 2.33 8.13 -2.39 -0.02 2.31 16 7 O -0.54 -13.00 11.52 -146.83 -1.69 -14.69 16 8 C -0.05 -1.07 6.18 24.83 0.15 -0.92 16 9 C -0.22 -4.23 10.80 22.19 0.24 -3.99 16 10 C -0.23 -3.72 10.91 22.19 0.24 -3.48 16 11 C -0.05 -0.73 12.09 66.97 0.81 0.08 16 12 O -0.19 -3.80 10.58 -0.30 0.00 -3.81 16 13 N -0.66 -16.48 3.78 -491.59 -1.86 -18.33 16 14 C 0.09 3.08 4.44 86.30 0.38 3.47 16 15 C -0.05 -2.08 0.60 -52.19 -0.03 -2.11 16 16 C -0.12 -4.30 7.89 71.98 0.57 -3.73 16 17 C -0.10 -3.82 8.06 71.98 0.58 -3.24 16 18 C 0.04 2.10 4.04 29.85 0.12 2.22 16 19 C -0.51 -28.94 7.65 25.60 0.20 -28.74 16 20 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 21 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 22 N -0.94 -58.60 13.29 21.45 0.28 -58.32 16 23 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 27 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 29 H 0.04 0.92 7.45 -2.39 -0.02 0.90 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.38 7.71 8.97 -74.06 -0.66 7.04 16 33 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.23 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.34 7.96 6.51 -89.69 -0.58 7.37 16 37 H 0.05 1.77 8.06 -2.38 -0.02 1.75 16 38 H 0.01 0.38 7.44 -2.38 -0.02 0.36 16 39 H 0.07 2.01 6.57 -2.39 -0.02 1.99 16 40 H 0.04 1.72 6.62 -2.39 -0.02 1.70 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.03 1.26 6.61 -2.39 -0.02 1.24 16 44 H 0.08 2.57 7.48 -2.39 -0.02 2.56 16 45 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 46 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 47 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -68.65 372.90 3.20 -65.44 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -0.30 Total: 21.15 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 4.74 Total: -38.79 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -1.57 Total: -76.65 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -1.69 Total: -18.50 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.65 3.20 -65.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305698286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.187 kcal (2) G-P(sol) polarization free energy of solvation -68.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds