Wall clock time and date at job start Tue Mar 31 2020 07:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46781 * 2 1 4 4 C 1.52997 * 109.47496 * 240.00075 * 2 1 3 5 5 C 1.53000 * 109.47057 * 174.99885 * 4 2 1 6 6 H 1.09000 * 109.47474 * 54.99879 * 5 4 2 7 7 O 1.42900 * 109.47211 * 294.99800 * 5 4 2 8 8 C 1.50702 * 109.46785 * 175.00094 * 5 4 2 9 9 C 1.34512 * 125.79146 * 264.99695 * 8 5 4 10 10 C 1.41376 * 106.84688 * 179.75198 * 9 8 5 11 11 C 1.34517 * 106.83881 * 0.37683 * 10 9 8 12 12 O 1.34305 * 125.78962 * 84.97917 * 8 5 4 13 13 N 1.46903 * 109.47079 * 119.99637 * 2 1 3 14 14 C 1.46901 * 111.00431 * 275.00178 * 13 2 1 15 15 C 1.52999 * 109.47184 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.46842 * 300.00077 * 15 14 13 17 17 C 1.53000 * 109.47029 * 60.00387 * 15 14 13 18 18 C 1.53001 * 109.46719 * 180.02562 * 15 14 13 19 19 C 1.50698 * 109.46839 * 179.97438 * 18 15 14 20 20 H 1.08003 * 120.00242 * 0.02562 * 19 18 15 21 21 C 1.37881 * 120.00244 * 180.02562 * 19 18 15 22 22 N 1.31509 * 120.00314 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99543 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47131 * 90.00427 * 23 21 19 25 25 H 1.48501 * 109.46868 * 210.00116 * 23 21 19 26 26 H 1.48496 * 109.47284 * 330.00103 * 23 21 19 27 27 H 1.08997 * 109.47721 * 299.99946 * 1 2 3 28 28 H 1.08999 * 109.47258 * 60.00600 * 1 2 3 29 29 H 1.09005 * 109.46781 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47116 * 54.99810 * 4 2 1 31 31 H 1.09004 * 109.47097 * 294.99880 * 4 2 1 32 32 H 0.96706 * 113.99859 * 300.00327 * 7 5 4 33 33 H 1.08006 * 126.57585 * 359.97438 * 9 8 5 34 34 H 1.07998 * 126.58562 * 180.23597 * 10 9 8 35 35 H 1.08002 * 125.79423 * 179.89440 * 11 10 9 36 36 H 1.00896 * 110.99766 * 38.96135 * 13 2 1 37 37 H 1.08999 * 109.47018 * 300.00630 * 14 13 2 38 38 H 1.09005 * 109.46608 * 59.99981 * 14 13 2 39 39 H 1.09003 * 109.47334 * 60.00604 * 16 15 14 40 40 H 1.09005 * 109.46785 * 180.02562 * 16 15 14 41 41 H 1.08995 * 109.47636 * 299.99588 * 16 15 14 42 42 H 1.08999 * 109.47054 * 59.99481 * 17 15 14 43 43 H 1.08998 * 109.47098 * 179.97438 * 17 15 14 44 44 H 1.08997 * 109.47052 * 299.99871 * 17 15 14 45 45 H 1.08991 * 109.47420 * 299.99832 * 18 15 14 46 46 H 1.08999 * 109.46739 * 60.00408 * 18 15 14 47 47 H 0.97000 * 120.00433 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.9955 -0.9921 -0.3867 7 8 3.9385 0.7551 -1.4879 8 6 4.0774 -1.4257 -2.4746 9 6 4.5230 -2.6934 -2.4119 10 6 4.8974 -3.0615 -3.7245 11 6 4.6662 -1.9940 -4.5096 12 8 4.1665 -1.0072 -3.7477 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3470 15 6 2.5962 -0.5328 3.5742 16 6 1.6472 -1.6892 3.8954 17 6 3.9935 -1.0849 3.2852 18 6 2.6609 0.4202 4.7695 19 6 3.1664 -0.3240 5.9784 20 1 3.4168 -1.3719 5.9019 21 6 3.3091 0.3326 7.1824 22 7 3.7507 -0.3167 8.2373 23 14 2.8767 2.1451 7.3146 24 1 1.4470 2.2867 7.6904 25 1 3.7266 2.7823 8.3522 26 1 3.1125 2.8070 6.0064 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6054 -0.2617 -2.1370 31 1 1.7517 -1.7715 -1.2056 32 1 3.5895 1.1583 -2.2946 33 1 4.5800 -3.3125 -1.5287 34 1 5.2952 -4.0158 -4.0367 35 1 4.8471 -1.9409 -5.5730 36 1 1.4496 -1.4979 1.4100 37 1 2.7587 1.0463 2.1183 38 1 1.0869 0.6163 2.5525 39 1 1.6007 -2.3683 3.0440 40 1 2.0130 -2.2272 4.7700 41 1 0.6518 -1.2959 4.1014 42 1 4.6695 -0.2610 3.0563 43 1 4.3598 -1.6227 4.1597 44 1 3.9470 -1.7638 2.4338 45 1 3.3367 1.2442 4.5409 46 1 1.6652 0.8130 4.9752 47 1 3.8508 0.1452 9.0844 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305698288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:55 Heat of formation + Delta-G solvation = -56.658801 kcal Electronic energy + Delta-G solvation = -24468.530031 eV Core-core repulsion = 21038.294204 eV Total energy + Delta-G solvation = -3430.235828 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.75149 -38.64927 -37.28617 -35.33903 -33.25094 -32.40681 -31.34428 -29.97187 -27.95833 -27.47109 -26.34541 -25.12340 -23.84163 -22.01120 -21.90023 -20.72441 -20.63336 -18.15511 -17.79683 -16.77923 -16.44125 -16.06629 -15.82394 -15.18026 -14.82470 -14.58725 -14.15603 -14.00660 -13.38588 -13.25361 -13.20964 -12.99658 -12.74620 -12.68920 -12.37874 -12.22360 -11.96241 -11.86228 -11.80820 -11.41927 -11.06246 -10.99939 -10.82219 -10.77079 -10.46968 -10.38478 -10.28731 -10.08805 -9.78979 -9.63828 -9.24824 -8.87118 -8.65559 -8.47042 -8.11280 -5.97437 -3.93342 1.53156 2.44167 2.75858 3.34125 3.42108 3.46275 4.23291 4.31107 4.41558 4.50957 4.75957 4.84128 4.92060 5.01475 5.13529 5.29336 5.34843 5.35917 5.56567 5.60194 5.63253 5.69742 5.71340 5.76693 5.84649 5.89028 5.96746 6.00727 6.10637 6.23019 6.30917 6.31352 6.46268 6.61476 6.72498 6.83832 6.92042 7.10951 7.17383 7.22419 7.33178 7.36800 7.46152 7.50795 7.67144 7.88583 8.62613 9.08663 9.65958 11.15735 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.003151 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.235885 B = 8884.662866 C = 9216.729039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.083 3.917 3 H 0.085 0.915 4 C -0.133 4.133 5 C 0.198 3.802 6 H 0.143 0.857 7 O -0.547 6.547 8 C -0.040 4.040 9 C -0.204 4.204 10 C -0.212 4.212 11 C -0.049 4.049 12 O -0.177 6.177 13 N -0.680 5.680 14 C 0.069 3.931 15 C -0.048 4.048 16 C -0.130 4.130 17 C -0.117 4.117 18 C -0.005 4.005 19 C -0.506 4.506 20 H 0.078 0.922 21 C 0.064 3.936 22 N -0.907 5.907 23 Si 0.875 3.125 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.266 1.266 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.373 0.627 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.201 0.799 36 H 0.339 0.661 37 H 0.067 0.933 38 H 0.022 0.978 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.015 0.985 46 H 0.007 0.993 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 -2.447 -25.424 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.027 4.027 3 H 0.103 0.897 4 C -0.171 4.171 5 C 0.139 3.861 6 H 0.161 0.839 7 O -0.352 6.352 8 C -0.090 4.090 9 C -0.224 4.224 10 C -0.232 4.232 11 C -0.116 4.116 12 O -0.073 6.073 13 N -0.312 5.312 14 C -0.060 4.060 15 C -0.049 4.049 16 C -0.187 4.187 17 C -0.174 4.174 18 C -0.042 4.042 19 C -0.544 4.544 20 H 0.096 0.904 21 C -0.136 4.136 22 N -0.546 5.546 23 Si 0.703 3.297 24 H -0.206 1.206 25 H -0.216 1.216 26 H -0.191 1.191 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.220 0.780 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.217 0.783 36 H 0.159 0.841 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.033 0.967 46 H 0.025 0.975 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.530 -2.158 -24.924 25.145 hybrid contribution -1.414 0.793 -0.156 1.629 sum -3.944 -1.364 -25.080 25.425 Atomic orbital electron populations 1.22494 0.97457 1.01984 1.02120 1.21495 0.92086 0.98693 0.90421 0.89716 1.22295 0.94671 1.02219 0.97962 1.20671 0.93855 0.79659 0.91935 0.83944 1.86674 1.77168 1.24299 1.47011 1.23739 1.04778 0.96261 0.84258 1.21655 1.05799 0.96061 0.98840 1.21864 1.07169 1.00582 0.93543 1.24015 1.03412 0.86939 0.97239 1.83966 1.64965 1.40183 1.18168 1.60621 1.56671 1.10014 1.03902 1.22145 0.98702 0.95049 0.90075 1.20413 0.95465 0.95735 0.93269 1.21780 0.98426 0.97824 1.00709 1.21605 0.95506 0.99993 1.00327 1.19626 0.95988 0.94991 0.93636 1.21145 1.42724 0.98276 0.92232 0.90442 1.25017 0.94978 0.97714 0.95912 1.69907 1.47372 1.36474 1.00868 0.86852 0.78354 0.86514 0.77974 1.20574 1.21585 1.19072 0.92336 0.92502 0.92577 0.91534 0.90555 0.78008 0.83156 0.83498 0.78277 0.84138 0.91427 0.95933 0.94613 0.91251 0.94244 0.94139 0.92233 0.93774 0.96684 0.97478 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.16 37.16 0.34 -1.42 16 2 C 0.08 0.89 2.54 -67.71 -0.17 0.72 16 3 H 0.08 1.01 7.35 -51.93 -0.38 0.63 16 4 C -0.13 -1.25 4.55 -26.73 -0.12 -1.37 16 5 C 0.20 2.15 3.37 -27.88 -0.09 2.05 16 6 H 0.14 1.77 7.62 -51.93 -0.40 1.38 16 7 O -0.55 -6.32 12.77 -40.01 -0.51 -6.83 16 8 C -0.04 -0.44 6.20 -35.62 -0.22 -0.66 16 9 C -0.20 -2.20 10.81 -39.71 -0.43 -2.63 16 10 C -0.21 -1.99 10.91 -39.70 -0.43 -2.42 16 11 C -0.05 -0.42 12.09 29.42 0.36 -0.07 16 12 O -0.18 -1.88 10.52 0.91 0.01 -1.88 16 13 N -0.68 -8.64 4.83 -106.72 -0.52 -9.16 16 14 C 0.07 1.09 4.45 -3.82 -0.02 1.07 16 15 C -0.05 -0.91 0.60 -154.51 -0.09 -1.01 16 16 C -0.13 -2.33 7.89 37.16 0.29 -2.04 16 17 C -0.12 -2.21 8.07 37.16 0.30 -1.91 16 18 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 19 C -0.51 -13.96 8.20 -34.44 -0.28 -14.25 16 20 H 0.08 2.28 5.92 -52.48 -0.31 1.97 16 21 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 22 N -0.91 -27.92 13.96 55.43 0.77 -27.14 16 23 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 27 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.37 3.06 8.93 45.56 0.41 3.47 16 33 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.34 4.18 6.51 -39.29 -0.26 3.92 16 37 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 38 H 0.02 0.36 7.44 -51.93 -0.39 -0.03 16 39 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 40 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 44 H 0.04 0.73 7.60 -51.93 -0.39 0.33 16 45 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 46 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -31.36 370.50 -7.38 -38.73 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.29 Total: 5.80 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -0.76 Total: -22.36 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.26 Total: -36.30 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.50 Total: -8.71 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.36 -7.38 -38.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305698288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.924 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds