Wall clock time and date at job start Tue Mar 31 2020 07:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46781 * 2 1 4 4 C 1.52997 * 109.47496 * 240.00075 * 2 1 3 5 5 C 1.53000 * 109.47057 * 174.99885 * 4 2 1 6 6 H 1.09000 * 109.47474 * 54.99879 * 5 4 2 7 7 O 1.42900 * 109.47211 * 294.99800 * 5 4 2 8 8 C 1.50702 * 109.46785 * 175.00094 * 5 4 2 9 9 C 1.34512 * 125.79146 * 264.99695 * 8 5 4 10 10 C 1.41376 * 106.84688 * 179.75198 * 9 8 5 11 11 C 1.34517 * 106.83881 * 0.37683 * 10 9 8 12 12 O 1.34305 * 125.78962 * 84.97917 * 8 5 4 13 13 N 1.46903 * 109.47079 * 119.99637 * 2 1 3 14 14 C 1.46901 * 111.00431 * 275.00178 * 13 2 1 15 15 C 1.52999 * 109.47184 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.46842 * 300.00077 * 15 14 13 17 17 C 1.53000 * 109.47029 * 60.00387 * 15 14 13 18 18 C 1.53001 * 109.46719 * 180.02562 * 15 14 13 19 19 C 1.50698 * 109.46839 * 179.97438 * 18 15 14 20 20 H 1.08003 * 120.00242 * 0.02562 * 19 18 15 21 21 C 1.37881 * 120.00244 * 180.02562 * 19 18 15 22 22 N 1.31509 * 120.00314 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99543 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47131 * 90.00427 * 23 21 19 25 25 H 1.48501 * 109.46868 * 210.00116 * 23 21 19 26 26 H 1.48496 * 109.47284 * 330.00103 * 23 21 19 27 27 H 1.08997 * 109.47721 * 299.99946 * 1 2 3 28 28 H 1.08999 * 109.47258 * 60.00600 * 1 2 3 29 29 H 1.09005 * 109.46781 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47116 * 54.99810 * 4 2 1 31 31 H 1.09004 * 109.47097 * 294.99880 * 4 2 1 32 32 H 0.96706 * 113.99859 * 300.00327 * 7 5 4 33 33 H 1.08006 * 126.57585 * 359.97438 * 9 8 5 34 34 H 1.07998 * 126.58562 * 180.23597 * 10 9 8 35 35 H 1.08002 * 125.79423 * 179.89440 * 11 10 9 36 36 H 1.00896 * 110.99766 * 38.96135 * 13 2 1 37 37 H 1.08999 * 109.47018 * 300.00630 * 14 13 2 38 38 H 1.09005 * 109.46608 * 59.99981 * 14 13 2 39 39 H 1.09003 * 109.47334 * 60.00604 * 16 15 14 40 40 H 1.09005 * 109.46785 * 180.02562 * 16 15 14 41 41 H 1.08995 * 109.47636 * 299.99588 * 16 15 14 42 42 H 1.08999 * 109.47054 * 59.99481 * 17 15 14 43 43 H 1.08998 * 109.47098 * 179.97438 * 17 15 14 44 44 H 1.08997 * 109.47052 * 299.99871 * 17 15 14 45 45 H 1.08991 * 109.47420 * 299.99832 * 18 15 14 46 46 H 1.08999 * 109.46739 * 60.00408 * 18 15 14 47 47 H 0.97000 * 120.00433 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.9955 -0.9921 -0.3867 7 8 3.9385 0.7551 -1.4879 8 6 4.0774 -1.4257 -2.4746 9 6 4.5230 -2.6934 -2.4119 10 6 4.8974 -3.0615 -3.7245 11 6 4.6662 -1.9940 -4.5096 12 8 4.1665 -1.0072 -3.7477 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3470 15 6 2.5962 -0.5328 3.5742 16 6 1.6472 -1.6892 3.8954 17 6 3.9935 -1.0849 3.2852 18 6 2.6609 0.4202 4.7695 19 6 3.1664 -0.3240 5.9784 20 1 3.4168 -1.3719 5.9019 21 6 3.3091 0.3326 7.1824 22 7 3.7507 -0.3167 8.2373 23 14 2.8767 2.1451 7.3146 24 1 1.4470 2.2867 7.6904 25 1 3.7266 2.7823 8.3522 26 1 3.1125 2.8070 6.0064 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6054 -0.2617 -2.1370 31 1 1.7517 -1.7715 -1.2056 32 1 3.5895 1.1583 -2.2946 33 1 4.5800 -3.3125 -1.5287 34 1 5.2952 -4.0158 -4.0367 35 1 4.8471 -1.9409 -5.5730 36 1 1.4496 -1.4979 1.4100 37 1 2.7587 1.0463 2.1183 38 1 1.0869 0.6163 2.5525 39 1 1.6007 -2.3683 3.0440 40 1 2.0130 -2.2272 4.7700 41 1 0.6518 -1.2959 4.1014 42 1 4.6695 -0.2610 3.0563 43 1 4.3598 -1.6227 4.1597 44 1 3.9470 -1.7638 2.4338 45 1 3.3367 1.2442 4.5409 46 1 1.6652 0.8130 4.9752 47 1 3.8508 0.1452 9.0844 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305698288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:54 Heat of formation + Delta-G solvation = -77.648827 kcal Electronic energy + Delta-G solvation = -24469.440227 eV Core-core repulsion = 21038.294204 eV Total energy + Delta-G solvation = -3431.146023 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.47777 -39.73265 -38.45102 -36.49888 -34.45650 -33.97678 -32.32524 -31.04530 -29.35916 -28.65180 -27.88257 -26.51103 -24.73879 -23.75000 -22.65812 -21.61345 -21.38115 -19.45833 -18.86091 -18.82393 -17.27001 -16.84337 -16.74367 -16.25431 -16.11638 -15.86874 -15.54408 -15.29218 -14.86703 -14.48143 -14.18553 -14.08077 -13.99777 -13.73246 -13.48763 -13.40498 -13.31532 -12.84468 -12.75758 -12.71223 -12.62818 -12.38933 -12.28385 -12.18522 -12.03289 -11.70298 -11.66737 -11.34087 -11.19442 -10.93837 -10.82543 -10.75793 -10.69165 -9.41557 -9.12692 -8.21133 -6.20980 0.80600 1.35044 1.37767 1.48787 1.71728 2.06399 2.39962 3.14014 3.29784 3.53772 3.61721 4.00296 4.13381 4.15629 4.19578 4.26269 4.26562 4.35696 4.40157 4.54568 4.56542 4.74485 4.83418 4.86662 4.91393 4.94977 4.99018 5.01287 5.08490 5.10522 5.15250 5.21594 5.22816 5.27441 5.32254 5.40971 5.47325 5.56128 5.61560 5.64985 5.80054 5.85024 6.19253 6.21385 6.43695 6.64432 6.77954 6.86502 7.41482 8.95159 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.003151 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.235885 B = 8884.662866 C = 9216.729039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.087 3.913 3 H 0.074 0.926 4 C -0.121 4.121 5 C 0.202 3.798 6 H 0.124 0.876 7 O -0.565 6.565 8 C -0.055 4.055 9 C -0.220 4.220 10 C -0.229 4.229 11 C -0.044 4.044 12 O -0.186 6.186 13 N -0.679 5.679 14 C 0.084 3.916 15 C -0.048 4.048 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.004 4.004 19 C -0.501 4.501 20 H 0.045 0.955 21 C 0.000 4.000 22 N -0.955 5.955 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.289 1.289 26 H -0.251 1.251 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.386 0.614 33 H 0.152 0.848 34 H 0.165 0.835 35 H 0.238 0.762 36 H 0.344 0.656 37 H 0.059 0.941 38 H 0.027 0.973 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.043 0.957 42 H 0.033 0.967 43 H 0.026 0.974 44 H 0.069 0.931 45 H 0.010 0.990 46 H 0.011 0.989 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 -1.690 -28.400 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.023 4.023 3 H 0.093 0.907 4 C -0.159 4.159 5 C 0.143 3.857 6 H 0.141 0.859 7 O -0.371 6.371 8 C -0.106 4.106 9 C -0.239 4.239 10 C -0.248 4.248 11 C -0.110 4.110 12 O -0.083 6.083 13 N -0.311 5.311 14 C -0.045 4.045 15 C -0.048 4.048 16 C -0.180 4.180 17 C -0.165 4.165 18 C -0.042 4.042 19 C -0.540 4.540 20 H 0.063 0.937 21 C -0.195 4.195 22 N -0.597 5.597 23 Si 0.764 3.236 24 H -0.195 1.195 25 H -0.215 1.215 26 H -0.175 1.175 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.235 0.765 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.254 0.746 36 H 0.164 0.836 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.028 0.972 46 H 0.029 0.971 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.785 -1.402 -27.933 28.223 hybrid contribution -0.968 0.457 0.690 1.274 sum -4.753 -0.946 -27.242 27.670 Atomic orbital electron populations 1.22432 0.96222 1.02558 1.02341 1.21491 0.92973 0.98058 0.89785 0.90742 1.22185 0.93577 1.02390 0.97763 1.20502 0.94597 0.79320 0.91262 0.85896 1.86632 1.77692 1.24740 1.48083 1.23724 1.05801 0.96429 0.84619 1.21910 1.05947 0.96310 0.99777 1.22183 1.07728 1.01839 0.93086 1.24797 1.01605 0.86065 0.98582 1.83960 1.65283 1.40919 1.18120 1.60540 1.57444 1.09727 1.03420 1.21814 0.98393 0.94691 0.89598 1.20344 0.95879 0.95454 0.93137 1.21683 0.98014 0.97718 1.00583 1.21499 0.95385 0.99850 0.99752 1.19600 0.95446 0.95323 0.93783 1.21441 1.41430 0.97263 0.93831 0.93682 1.25916 0.95333 1.02596 0.95675 1.70060 1.49525 1.38547 1.01600 0.85812 0.78422 0.80808 0.78510 1.19499 1.21508 1.17471 0.93418 0.91002 0.91817 0.89951 0.90148 0.76476 0.82999 0.81697 0.74635 0.83573 0.92277 0.95521 0.91301 0.94708 0.93774 0.94780 0.95514 0.91241 0.97200 0.97110 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.16 71.98 0.66 -2.23 16 2 C 0.09 1.65 2.54 44.91 0.11 1.76 16 3 H 0.07 1.62 7.35 -2.38 -0.02 1.60 16 4 C -0.12 -1.98 4.55 30.59 0.14 -1.84 16 5 C 0.20 4.13 3.37 29.85 0.10 4.23 16 6 H 0.12 2.97 7.62 -2.39 -0.02 2.95 16 7 O -0.56 -12.35 12.77 -144.41 -1.84 -14.20 16 8 C -0.06 -1.15 6.20 24.83 0.15 -1.00 16 9 C -0.22 -4.50 10.81 22.19 0.24 -4.26 16 10 C -0.23 -3.86 10.91 22.19 0.24 -3.62 16 11 C -0.04 -0.65 12.09 66.97 0.81 0.16 16 12 O -0.19 -3.61 10.52 1.99 0.02 -3.59 16 13 N -0.68 -15.83 4.83 -491.56 -2.37 -18.20 16 14 C 0.08 2.53 4.45 86.30 0.38 2.91 16 15 C -0.05 -1.78 0.60 -52.18 -0.03 -1.81 16 16 C -0.12 -4.31 7.89 71.98 0.57 -3.75 16 17 C -0.11 -4.08 8.07 71.98 0.58 -3.50 16 18 C 0.00 -0.17 3.11 29.85 0.09 -0.08 16 19 C -0.50 -28.45 8.20 25.60 0.21 -28.24 16 20 H 0.05 2.79 5.92 -2.91 -0.02 2.78 16 21 C 0.00 0.02 5.47 84.66 0.46 0.48 16 22 N -0.96 -60.70 13.96 21.45 0.30 -60.40 16 23 Si 0.94 45.37 27.47 68.60 1.88 47.26 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 26 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 27 H 0.05 0.90 7.45 -2.39 -0.02 0.88 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.96 8.13 -2.38 -0.02 0.94 16 30 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.39 5.75 8.93 -74.05 -0.66 5.09 16 33 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 35 H 0.24 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.34 7.52 6.51 -89.70 -0.58 6.93 16 37 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 38 H 0.03 0.78 7.44 -2.38 -0.02 0.77 16 39 H 0.07 1.94 6.57 -2.39 -0.02 1.92 16 40 H 0.03 1.45 6.62 -2.38 -0.02 1.43 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.03 1.16 6.62 -2.39 -0.02 1.14 16 44 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 45 H 0.01 0.46 7.20 -2.39 -0.02 0.45 16 46 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 47 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -69.32 370.50 2.36 -66.96 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.35 Total: 22.95 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 4.73 Total: -40.78 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -2.08 Total: -78.60 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -1.82 Total: -17.79 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.26 kcal Total: -69.32 2.36 -66.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305698288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.688 kcal (2) G-P(sol) polarization free energy of solvation -69.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds