Wall clock time and date at job start Tue Mar 31 2020 07:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 5 5 C 1.53002 * 109.47188 * 184.99772 * 4 2 1 6 6 H 1.08993 * 109.47281 * 305.00190 * 5 4 2 7 7 O 1.42902 * 109.46974 * 65.00508 * 5 4 2 8 8 C 1.50699 * 109.46847 * 185.00026 * 5 4 2 9 9 C 1.34510 * 125.78843 * 100.00663 * 8 5 4 10 10 C 1.41385 * 106.84387 * 179.97438 * 9 8 5 11 11 C 1.34516 * 106.83721 * 0.02562 * 10 9 8 12 12 O 1.34305 * 108.42192 * 359.73217 * 11 10 9 13 13 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 14 14 C 1.46905 * 110.99870 * 84.99904 * 13 2 1 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.47206 * 299.99787 * 15 14 13 17 17 C 1.53001 * 109.47323 * 60.00045 * 15 14 13 18 18 C 1.53004 * 109.47360 * 180.02562 * 15 14 13 19 19 C 1.50697 * 109.47387 * 179.97438 * 18 15 14 20 20 H 1.08000 * 120.00144 * 0.02562 * 19 18 15 21 21 C 1.37874 * 119.99821 * 179.97438 * 19 18 15 22 22 N 1.31510 * 120.00108 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99834 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46679 * 90.00592 * 23 21 19 25 25 H 1.48496 * 109.47358 * 209.99839 * 23 21 19 26 26 H 1.48495 * 109.47285 * 330.00458 * 23 21 19 27 27 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 29 29 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 30 30 H 1.08994 * 109.47082 * 305.00122 * 4 2 1 31 31 H 1.08999 * 109.46730 * 65.00057 * 4 2 1 32 32 H 0.96698 * 113.99809 * 59.99270 * 7 5 4 33 33 H 1.08006 * 126.58094 * 359.96480 * 9 8 5 34 34 H 1.07998 * 126.57862 * 180.02562 * 10 9 8 35 35 H 1.08000 * 125.78625 * 180.02562 * 11 10 9 36 36 H 1.00901 * 111.00067 * 208.95080 * 13 2 1 37 37 H 1.09001 * 109.46798 * 300.00327 * 14 13 2 38 38 H 1.08998 * 109.46961 * 60.00043 * 14 13 2 39 39 H 1.08999 * 109.47049 * 60.00315 * 16 15 14 40 40 H 1.09005 * 109.47151 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.47171 * 300.00432 * 16 15 14 42 42 H 1.08991 * 109.46963 * 60.00286 * 17 15 14 43 43 H 1.09005 * 109.47384 * 179.97438 * 17 15 14 44 44 H 1.08999 * 109.47105 * 299.99791 * 17 15 14 45 45 H 1.09001 * 109.46514 * 300.00105 * 18 15 14 46 46 H 1.08998 * 109.46924 * 59.99625 * 18 15 14 47 47 H 0.97004 * 119.99990 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 1 3.9953 -0.9922 0.3868 7 8 3.9385 0.7549 1.4881 8 6 4.0772 -1.4259 2.4747 9 6 4.6102 -2.6586 2.3977 10 6 4.9538 -3.0393 3.7153 11 6 4.6097 -2.0167 4.5186 12 8 4.0844 -1.0401 3.7611 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5950 -0.5330 -3.5745 16 6 3.9921 -1.0861 -3.2862 17 6 1.6451 -1.6887 -3.8953 18 6 2.6610 0.4203 -4.7694 19 6 3.1665 -0.3239 -5.9784 20 1 3.4154 -1.3721 -5.9023 21 6 3.3102 0.3331 -7.1820 22 7 3.0067 1.6093 -7.2748 23 14 3.9375 -0.5892 -8.6805 24 1 2.7889 -1.1722 -9.4195 25 1 4.6720 0.3484 -9.5673 26 1 4.8501 -1.6771 -8.2460 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -0.2618 2.1369 31 1 1.7516 -1.7715 1.2055 32 1 3.5895 1.1581 2.2947 33 1 4.7488 -3.2451 1.5015 34 1 5.4057 -3.9722 4.0185 35 1 4.7388 -1.9845 5.5904 36 1 2.9173 -1.1204 -1.0288 37 1 1.0870 0.6164 -2.5525 38 1 2.7588 1.0463 -2.1182 39 1 3.9456 -1.7651 -2.4349 40 1 4.3571 -1.6249 -4.1607 41 1 4.6688 -0.2627 -3.0577 42 1 0.6499 -1.2947 -4.1007 43 1 2.0101 -2.2269 -4.7702 44 1 1.5986 -2.3678 -3.0439 45 1 1.6658 0.8146 -4.9749 46 1 3.3379 1.2434 -4.5406 47 1 3.1082 2.0716 -8.1216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305698290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:57 Heat of formation + Delta-G solvation = -57.617950 kcal Electronic energy + Delta-G solvation = -24438.486186 eV Core-core repulsion = 21008.208767 eV Total energy + Delta-G solvation = -3430.277419 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.85519 -38.77113 -37.21908 -35.22011 -33.33523 -32.45459 -31.33157 -29.98966 -28.06950 -26.84174 -26.28744 -25.14400 -23.90508 -22.38413 -22.01259 -20.79141 -20.32691 -18.31126 -17.80991 -16.52657 -16.24403 -16.15631 -15.90139 -15.69580 -15.01697 -14.50297 -14.26966 -13.82807 -13.42711 -13.14665 -13.09760 -12.93451 -12.83321 -12.60398 -12.07932 -11.98011 -11.95056 -11.85854 -11.75576 -11.43792 -11.08924 -10.89533 -10.75196 -10.67641 -10.45695 -10.42938 -10.20522 -10.15458 -10.06317 -9.63497 -8.97623 -8.78249 -8.74236 -8.28304 -8.04871 -5.92804 -3.92768 1.42810 2.34842 2.64358 3.35632 3.42121 3.44848 4.08833 4.17321 4.43020 4.54135 4.59042 4.71345 4.80938 4.90230 5.01552 5.39518 5.43009 5.46432 5.53985 5.60736 5.70305 5.74173 5.76351 5.79552 5.86424 5.92125 6.02211 6.09652 6.21235 6.33271 6.35919 6.39645 6.56941 6.69969 6.81086 6.83961 6.86643 7.25309 7.26715 7.28460 7.30549 7.45657 7.70342 7.75503 7.90522 8.07828 8.52308 9.12727 9.69845 11.18903 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.003058 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.095732 B = 9152.818363 C = 9683.728644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.084 3.916 3 H 0.051 0.949 4 C -0.150 4.150 5 C 0.188 3.812 6 H 0.126 0.874 7 O -0.547 6.547 8 C -0.042 4.042 9 C -0.201 4.201 10 C -0.212 4.212 11 C -0.044 4.044 12 O -0.175 6.175 13 N -0.682 5.682 14 C 0.070 3.930 15 C -0.058 4.058 16 C -0.129 4.129 17 C -0.115 4.115 18 C 0.034 3.966 19 C -0.506 4.506 20 H 0.059 0.941 21 C 0.054 3.946 22 N -0.898 5.898 23 Si 0.887 3.113 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.275 1.275 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.379 0.621 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.202 0.798 36 H 0.333 0.667 37 H 0.066 0.934 38 H 0.025 0.975 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.041 0.959 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.014 0.986 46 H 0.013 0.987 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -6.339 23.776 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 H 0.069 0.931 4 C -0.188 4.188 5 C 0.129 3.871 6 H 0.143 0.857 7 O -0.352 6.352 8 C -0.092 4.092 9 C -0.220 4.220 10 C -0.231 4.231 11 C -0.111 4.111 12 O -0.071 6.071 13 N -0.315 5.315 14 C -0.058 4.058 15 C -0.059 4.059 16 C -0.186 4.186 17 C -0.173 4.173 18 C -0.004 4.004 19 C -0.544 4.544 20 H 0.077 0.923 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.715 3.285 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.200 1.200 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.227 0.773 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.219 0.781 36 H 0.154 0.846 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.718 -6.262 23.020 23.868 hybrid contribution 0.985 -0.118 -0.105 0.998 sum 0.267 -6.381 22.916 23.789 Atomic orbital electron populations 1.21764 0.94547 1.02153 1.01101 1.21446 0.95853 0.96459 0.88844 0.93096 1.22531 0.93814 1.03264 0.99217 1.20644 0.94284 0.80324 0.91873 0.85658 1.86657 1.77211 1.23769 1.47533 1.23418 1.05018 0.96897 0.83903 1.21676 1.04848 0.96495 0.98958 1.21869 1.06877 1.01283 0.93114 1.24053 1.02199 0.87593 0.97259 1.83961 1.64411 1.41421 1.17293 1.60730 1.32977 1.33855 1.03986 1.22146 1.00221 0.93238 0.90232 1.20625 0.94085 0.96661 0.94498 1.21772 0.97049 0.99622 1.00175 1.21592 0.98220 0.97513 0.99928 1.19120 0.96927 0.93587 0.90746 1.21241 1.42754 0.96266 0.94152 0.92315 1.25016 0.95928 0.94825 0.98851 1.69968 1.49339 1.08951 1.25514 0.86672 0.78926 0.79652 0.83210 1.20815 1.21419 1.19953 0.92164 0.93205 0.92311 0.90682 0.89564 0.77316 0.83104 0.83340 0.78093 0.84594 0.91581 0.95643 0.95060 0.91722 0.94007 0.94224 0.92788 0.93928 0.96724 0.96896 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.41 37.15 0.35 -1.21 16 2 C 0.08 1.00 2.60 -67.72 -0.18 0.82 16 3 H 0.05 0.67 7.35 -51.93 -0.38 0.28 16 4 C -0.15 -1.46 4.47 -26.73 -0.12 -1.58 16 5 C 0.19 1.96 3.34 -27.88 -0.09 1.86 16 6 H 0.13 1.38 6.28 -51.93 -0.33 1.05 16 7 O -0.55 -6.14 12.78 -37.51 -0.48 -6.62 16 8 C -0.04 -0.44 6.18 -35.63 -0.22 -0.66 16 9 C -0.20 -2.04 10.80 -39.70 -0.43 -2.47 16 10 C -0.21 -1.88 10.91 -39.70 -0.43 -2.31 16 11 C -0.04 -0.36 12.09 29.42 0.36 0.00 16 12 O -0.17 -1.78 10.58 3.42 0.04 -1.74 16 13 N -0.68 -9.60 5.52 -106.73 -0.59 -10.19 16 14 C 0.07 1.22 4.45 -3.82 -0.02 1.21 16 15 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 16 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 17 C -0.12 -2.23 8.07 37.16 0.30 -1.93 16 18 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 19 C -0.51 -13.94 7.65 -34.44 -0.26 -14.20 16 20 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 21 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 23 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.38 3.02 8.97 45.56 0.41 3.43 16 33 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.20 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.33 4.50 4.46 -39.29 -0.18 4.33 16 37 H 0.07 1.19 7.44 -51.93 -0.39 0.81 16 38 H 0.03 0.46 8.05 -51.93 -0.42 0.05 16 39 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 40 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 44 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -31.48 371.68 -7.64 -39.13 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.17 Total: 5.09 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -0.76 Total: -21.65 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.15 Total: -36.56 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.44 Total: -8.36 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.48 -7.64 -39.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305698290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.493 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds