Wall clock time and date at job start Tue Mar 31 2020 07:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 5 5 C 1.53002 * 109.47188 * 184.99772 * 4 2 1 6 6 H 1.08993 * 109.47281 * 305.00190 * 5 4 2 7 7 O 1.42902 * 109.46974 * 65.00508 * 5 4 2 8 8 C 1.50699 * 109.46847 * 185.00026 * 5 4 2 9 9 C 1.34510 * 125.78843 * 100.00663 * 8 5 4 10 10 C 1.41385 * 106.84387 * 179.97438 * 9 8 5 11 11 C 1.34516 * 106.83721 * 0.02562 * 10 9 8 12 12 O 1.34305 * 108.42192 * 359.73217 * 11 10 9 13 13 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 14 14 C 1.46905 * 110.99870 * 84.99904 * 13 2 1 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.47206 * 299.99787 * 15 14 13 17 17 C 1.53001 * 109.47323 * 60.00045 * 15 14 13 18 18 C 1.53004 * 109.47360 * 180.02562 * 15 14 13 19 19 C 1.50697 * 109.47387 * 179.97438 * 18 15 14 20 20 H 1.08000 * 120.00144 * 0.02562 * 19 18 15 21 21 C 1.37874 * 119.99821 * 179.97438 * 19 18 15 22 22 N 1.31510 * 120.00108 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99834 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46679 * 90.00592 * 23 21 19 25 25 H 1.48496 * 109.47358 * 209.99839 * 23 21 19 26 26 H 1.48495 * 109.47285 * 330.00458 * 23 21 19 27 27 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 29 29 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 30 30 H 1.08994 * 109.47082 * 305.00122 * 4 2 1 31 31 H 1.08999 * 109.46730 * 65.00057 * 4 2 1 32 32 H 0.96698 * 113.99809 * 59.99270 * 7 5 4 33 33 H 1.08006 * 126.58094 * 359.96480 * 9 8 5 34 34 H 1.07998 * 126.57862 * 180.02562 * 10 9 8 35 35 H 1.08000 * 125.78625 * 180.02562 * 11 10 9 36 36 H 1.00901 * 111.00067 * 208.95080 * 13 2 1 37 37 H 1.09001 * 109.46798 * 300.00327 * 14 13 2 38 38 H 1.08998 * 109.46961 * 60.00043 * 14 13 2 39 39 H 1.08999 * 109.47049 * 60.00315 * 16 15 14 40 40 H 1.09005 * 109.47151 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.47171 * 300.00432 * 16 15 14 42 42 H 1.08991 * 109.46963 * 60.00286 * 17 15 14 43 43 H 1.09005 * 109.47384 * 179.97438 * 17 15 14 44 44 H 1.08999 * 109.47105 * 299.99791 * 17 15 14 45 45 H 1.09001 * 109.46514 * 300.00105 * 18 15 14 46 46 H 1.08998 * 109.46924 * 59.99625 * 18 15 14 47 47 H 0.97004 * 119.99990 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 1 3.9953 -0.9922 0.3868 7 8 3.9385 0.7549 1.4881 8 6 4.0772 -1.4259 2.4747 9 6 4.6102 -2.6586 2.3977 10 6 4.9538 -3.0393 3.7153 11 6 4.6097 -2.0167 4.5186 12 8 4.0844 -1.0401 3.7611 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5950 -0.5330 -3.5745 16 6 3.9921 -1.0861 -3.2862 17 6 1.6451 -1.6887 -3.8953 18 6 2.6610 0.4203 -4.7694 19 6 3.1665 -0.3239 -5.9784 20 1 3.4154 -1.3721 -5.9023 21 6 3.3102 0.3331 -7.1820 22 7 3.0067 1.6093 -7.2748 23 14 3.9375 -0.5892 -8.6805 24 1 2.7889 -1.1722 -9.4195 25 1 4.6720 0.3484 -9.5673 26 1 4.8501 -1.6771 -8.2460 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -0.2618 2.1369 31 1 1.7516 -1.7715 1.2055 32 1 3.5895 1.1581 2.2947 33 1 4.7488 -3.2451 1.5015 34 1 5.4057 -3.9722 4.0185 35 1 4.7388 -1.9845 5.5904 36 1 2.9173 -1.1204 -1.0288 37 1 1.0870 0.6164 -2.5525 38 1 2.7588 1.0463 -2.1182 39 1 3.9456 -1.7651 -2.4349 40 1 4.3571 -1.6249 -4.1607 41 1 4.6688 -0.2627 -3.0577 42 1 0.6499 -1.2947 -4.1007 43 1 2.0101 -2.2269 -4.7702 44 1 1.5986 -2.3678 -3.0439 45 1 1.6658 0.8146 -4.9749 46 1 3.3379 1.2434 -4.5406 47 1 3.1082 2.0716 -8.1216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305698290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:57 Heat of formation + Delta-G solvation = -78.365438 kcal Electronic energy + Delta-G solvation = -24439.385865 eV Core-core repulsion = 21008.208767 eV Total energy + Delta-G solvation = -3431.177098 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.53374 -39.86478 -38.49811 -36.45248 -34.48394 -34.01252 -32.28763 -31.12215 -28.90472 -28.78019 -27.86331 -26.65673 -24.91255 -24.10759 -22.70933 -21.49120 -21.32055 -19.57012 -18.93656 -18.32580 -17.29906 -16.94649 -16.86319 -16.76819 -16.48647 -15.79615 -15.42588 -15.37934 -14.77365 -14.43478 -14.08774 -13.99599 -13.85994 -13.76711 -13.52497 -13.44147 -13.06119 -12.84495 -12.73905 -12.71253 -12.64395 -12.51671 -12.38624 -12.23784 -12.09052 -11.88051 -11.75012 -11.34403 -11.24637 -10.86575 -10.83172 -10.69252 -10.49829 -9.43578 -9.26221 -8.13094 -6.20214 0.74673 1.41223 1.41903 1.52488 1.68019 1.99089 2.44351 3.20754 3.21371 3.42055 3.48010 3.80689 3.99978 4.08374 4.14846 4.21261 4.24024 4.30873 4.40941 4.51151 4.61710 4.77336 4.80720 4.83559 4.89491 4.94573 4.97811 4.99357 5.04126 5.09573 5.14878 5.19818 5.22891 5.26946 5.44077 5.52955 5.55281 5.57578 5.60517 5.67783 5.89169 5.94008 6.13604 6.14685 6.38224 6.54723 6.63039 6.95123 7.47098 8.99416 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.003058 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.095732 B = 9152.818363 C = 9683.728644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.084 3.916 3 H 0.040 0.960 4 C -0.136 4.136 5 C 0.192 3.808 6 H 0.117 0.883 7 O -0.565 6.565 8 C -0.059 4.059 9 C -0.214 4.214 10 C -0.229 4.229 11 C -0.039 4.039 12 O -0.185 6.185 13 N -0.675 5.675 14 C 0.085 3.915 15 C -0.055 4.055 16 C -0.122 4.122 17 C -0.105 4.105 18 C 0.040 3.960 19 C -0.513 4.513 20 H 0.067 0.933 21 C -0.006 4.006 22 N -0.939 5.939 23 Si 0.957 3.043 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.262 1.262 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.392 0.608 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.238 0.762 36 H 0.339 0.661 37 H 0.056 0.944 38 H 0.012 0.988 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.038 0.962 44 H 0.069 0.931 45 H -0.017 1.017 46 H -0.019 1.019 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -8.312 25.629 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 H 0.058 0.942 4 C -0.174 4.174 5 C 0.132 3.868 6 H 0.134 0.866 7 O -0.372 6.372 8 C -0.109 4.109 9 C -0.233 4.233 10 C -0.248 4.248 11 C -0.106 4.106 12 O -0.082 6.082 13 N -0.309 5.309 14 C -0.045 4.045 15 C -0.055 4.055 16 C -0.179 4.179 17 C -0.163 4.163 18 C 0.002 3.998 19 C -0.551 4.551 20 H 0.085 0.915 21 C -0.202 4.202 22 N -0.580 5.580 23 Si 0.782 3.218 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.186 1.186 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.241 0.759 33 H 0.174 0.826 34 H 0.185 0.815 35 H 0.255 0.745 36 H 0.160 0.840 37 H 0.074 0.926 38 H 0.030 0.970 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.002 0.998 46 H 0.000 1.000 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.436 -8.252 24.896 26.231 hybrid contribution 0.897 0.521 -0.586 1.191 sum 0.460 -7.731 24.310 25.514 Atomic orbital electron populations 1.21747 0.93893 1.02350 1.01299 1.21493 0.96280 0.95971 0.88785 0.94244 1.22402 0.93388 1.03213 0.98399 1.20532 0.94498 0.79975 0.91744 0.86581 1.86622 1.77676 1.24363 1.48572 1.23366 1.06193 0.97150 0.84178 1.21966 1.04730 0.96632 0.99990 1.22197 1.07455 1.02462 0.92684 1.24835 1.00456 0.86677 0.98652 1.83955 1.64773 1.42189 1.17274 1.60681 1.33278 1.33009 1.03962 1.21814 0.99046 0.93014 0.90599 1.20493 0.95653 0.95984 0.93416 1.21685 0.95581 0.99785 1.00882 1.21489 0.97195 0.97236 1.00337 1.19004 0.94057 0.93712 0.92985 1.21623 1.41944 0.96701 0.94836 0.91503 1.25938 0.96315 0.95655 1.02309 1.70116 1.50836 1.10737 1.26357 0.85567 0.78573 0.78493 0.79166 1.20084 1.21305 1.18587 0.91900 0.91071 0.94125 0.89061 0.89141 0.75882 0.82563 0.81510 0.74541 0.83987 0.92585 0.96988 0.91439 0.93336 0.94764 0.95154 0.94283 0.91204 0.99842 1.00049 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.41 71.98 0.68 -2.17 16 2 C 0.08 1.89 2.60 44.91 0.12 2.01 16 3 H 0.04 1.01 7.35 -2.39 -0.02 0.99 16 4 C -0.14 -2.36 4.47 30.60 0.14 -2.22 16 5 C 0.19 3.73 3.34 29.85 0.10 3.83 16 6 H 0.12 2.42 6.28 -2.39 -0.02 2.40 16 7 O -0.57 -12.18 12.78 -146.80 -1.88 -14.06 16 8 C -0.06 -1.14 6.18 24.83 0.15 -0.99 16 9 C -0.21 -4.01 10.80 22.19 0.24 -3.77 16 10 C -0.23 -3.54 10.91 22.19 0.24 -3.30 16 11 C -0.04 -0.54 12.09 66.97 0.81 0.27 16 12 O -0.19 -3.40 10.58 -0.34 0.00 -3.41 16 13 N -0.68 -18.21 5.52 -491.58 -2.71 -20.92 16 14 C 0.08 2.98 4.45 86.30 0.38 3.36 16 15 C -0.06 -2.22 0.60 -52.18 -0.03 -2.25 16 16 C -0.12 -4.49 7.89 71.98 0.57 -3.92 16 17 C -0.11 -4.01 8.07 71.98 0.58 -3.43 16 18 C 0.04 2.12 4.04 29.85 0.12 2.24 16 19 C -0.51 -28.79 7.65 25.60 0.20 -28.59 16 20 H 0.07 3.58 5.68 -2.91 -0.02 3.57 16 21 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 22 N -0.94 -58.34 13.29 21.45 0.28 -58.06 16 23 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.04 1.00 7.45 -2.39 -0.02 0.98 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.39 5.81 8.97 -74.06 -0.66 5.14 16 33 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.24 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.34 8.56 4.46 -89.69 -0.40 8.16 16 37 H 0.06 2.08 7.44 -2.39 -0.02 2.06 16 38 H 0.01 0.45 8.05 -2.39 -0.02 0.43 16 39 H 0.07 1.98 6.57 -2.39 -0.02 1.96 16 40 H 0.05 1.93 6.62 -2.38 -0.02 1.91 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.04 1.58 6.62 -2.38 -0.02 1.57 16 44 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 45 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 46 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 47 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -69.16 371.68 2.36 -66.79 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -0.11 Total: 21.46 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 4.75 Total: -38.81 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -2.43 Total: -78.98 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -1.88 Total: -17.46 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.16 2.36 -66.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305698290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.572 kcal (2) G-P(sol) polarization free energy of solvation -69.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds