Wall clock time and date at job start Tue Mar 31 2020 07:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 5 5 C 1.53003 * 109.46992 * 185.00330 * 4 2 1 6 6 H 1.08997 * 109.47157 * 54.99681 * 5 4 2 7 7 O 1.42908 * 109.46771 * 294.99790 * 5 4 2 8 8 C 1.50696 * 109.47037 * 175.00225 * 5 4 2 9 9 C 1.34525 * 125.78456 * 264.71412 * 8 5 4 10 10 C 1.41386 * 106.83716 * 179.88896 * 9 8 5 11 11 C 1.34519 * 106.84030 * 0.37476 * 10 9 8 12 12 O 1.34302 * 108.42273 * 359.76786 * 11 10 9 13 13 N 1.46898 * 109.47006 * 240.00218 * 2 1 3 14 14 C 1.46906 * 110.99961 * 84.99970 * 13 2 1 15 15 C 1.52993 * 109.47228 * 179.97438 * 14 13 2 16 16 C 1.53003 * 109.47095 * 299.99967 * 15 14 13 17 17 C 1.53004 * 109.47155 * 59.99802 * 15 14 13 18 18 C 1.52999 * 109.47582 * 180.02562 * 15 14 13 19 19 C 1.50694 * 109.47615 * 179.97438 * 18 15 14 20 20 H 1.08004 * 120.00272 * 0.02562 * 19 18 15 21 21 C 1.37882 * 120.00232 * 179.97438 * 19 18 15 22 22 N 1.31516 * 119.99610 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00132 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47036 * 60.00228 * 23 21 19 25 25 H 1.48493 * 109.47072 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47207 * 300.00455 * 23 21 19 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 30 30 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 31 31 H 1.09002 * 109.47223 * 64.99920 * 4 2 1 32 32 H 0.96695 * 113.99548 * 299.99952 * 7 5 4 33 33 H 1.07999 * 126.57994 * 0.02562 * 9 8 5 34 34 H 1.08001 * 126.57818 * 180.11550 * 10 9 8 35 35 H 1.07999 * 125.78546 * 179.75111 * 11 10 9 36 36 H 1.00893 * 111.00338 * 321.04590 * 13 2 1 37 37 H 1.08996 * 109.46971 * 299.99790 * 14 13 2 38 38 H 1.08994 * 109.47376 * 59.99710 * 14 13 2 39 39 H 1.08994 * 109.47454 * 60.00142 * 16 15 14 40 40 H 1.09001 * 109.47127 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.47286 * 299.99668 * 16 15 14 42 42 H 1.08998 * 109.47179 * 60.00601 * 17 15 14 43 43 H 1.09004 * 109.47026 * 180.02562 * 17 15 14 44 44 H 1.08994 * 109.47190 * 299.99733 * 17 15 14 45 45 H 1.09005 * 109.46588 * 299.99907 * 18 15 14 46 46 H 1.09001 * 109.47422 * 59.99419 * 18 15 14 47 47 H 0.97006 * 119.99290 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 1 3.8571 0.4358 1.2677 7 8 4.1393 -1.3164 0.2101 8 6 4.0571 -1.2159 2.6042 9 6 4.3195 -0.5408 3.7378 10 6 4.7514 -1.4922 4.6903 11 6 4.7351 -2.6905 4.0793 12 8 4.3136 -2.5170 2.8160 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2227 -2.3469 15 6 2.5962 -0.5326 -3.5742 16 6 3.9935 -1.0848 -3.2852 17 6 1.6473 -1.6891 -3.8954 18 6 2.6622 0.4206 -4.7691 19 6 3.1688 -0.3232 -5.9778 20 1 3.4184 -1.3713 -5.9016 21 6 3.3128 0.3338 -7.1814 22 7 3.0084 1.6099 -7.2744 23 14 3.9401 -0.5885 -8.6799 24 1 3.0189 -1.7108 -8.9918 25 1 4.0042 0.3368 -9.8396 26 1 5.2962 -1.1245 -8.3993 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6055 -0.2618 2.1369 31 1 1.7517 -1.7716 1.2055 32 1 3.9206 -2.2580 0.1870 33 1 4.2175 0.5233 3.8916 34 1 5.0430 -1.2942 5.7112 35 1 5.0138 -3.6323 4.5285 36 1 1.4497 -1.4978 -1.4101 37 1 1.0871 0.6164 -2.5525 38 1 2.7588 1.0463 -2.1183 39 1 3.9470 -1.7638 -2.4339 40 1 4.3594 -1.6233 -4.1594 41 1 4.6696 -0.2610 -3.0564 42 1 0.6518 -1.2957 -4.1014 43 1 2.0135 -2.2275 -4.7696 44 1 1.6008 -2.3681 -3.0441 45 1 1.6668 0.8143 -4.9752 46 1 3.3384 1.2442 -4.5400 47 1 3.1101 2.0722 -8.1212 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305698291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:00 Heat of formation + Delta-G solvation = -53.988963 kcal Electronic energy + Delta-G solvation = -24585.476982 eV Core-core repulsion = 21155.356928 eV Total energy + Delta-G solvation = -3430.120055 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.72608 -38.48832 -36.95559 -35.10449 -33.23621 -32.42068 -31.23533 -29.74852 -27.84908 -26.79356 -26.18826 -25.06475 -23.71438 -22.26768 -21.92833 -20.73041 -20.55942 -18.03153 -17.72435 -16.35299 -16.14436 -15.98081 -15.68647 -15.09853 -14.58547 -14.47114 -14.23730 -13.98858 -13.30742 -13.04118 -13.00552 -12.90356 -12.74526 -12.64531 -12.17770 -11.92818 -11.89972 -11.61425 -11.60647 -11.27305 -10.90184 -10.87913 -10.75486 -10.67381 -10.37971 -10.16446 -10.11235 -10.03694 -10.00058 -9.55966 -8.90760 -8.75401 -8.62047 -8.25498 -7.83948 -5.90475 -3.89991 1.56044 2.43396 2.80470 3.38580 3.42917 3.45459 4.33982 4.40381 4.54253 4.63849 4.76421 4.84699 4.95510 5.08547 5.19151 5.33335 5.41947 5.45336 5.58406 5.60640 5.73674 5.76028 5.79317 5.87497 5.91091 5.91575 6.06163 6.08933 6.17306 6.31107 6.38140 6.46598 6.63582 6.83764 6.93103 6.95240 6.96937 7.32863 7.38449 7.42312 7.54500 7.76828 7.83170 7.83555 7.95361 8.10712 8.55825 9.15454 9.72329 11.21272 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.003078 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.479290 B = 9093.572170 C = 9659.935304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.076 0.924 4 C -0.135 4.135 5 C 0.201 3.799 6 H 0.118 0.882 7 O -0.515 6.515 8 C -0.034 4.034 9 C -0.215 4.215 10 C -0.215 4.215 11 C -0.047 4.047 12 O -0.171 6.171 13 N -0.664 5.664 14 C 0.075 3.925 15 C -0.056 4.056 16 C -0.110 4.110 17 C -0.127 4.127 18 C 0.034 3.966 19 C -0.504 4.504 20 H 0.058 0.942 21 C 0.054 3.946 22 N -0.899 5.899 23 Si 0.887 3.113 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.277 1.277 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.373 0.627 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.200 0.800 36 H 0.334 0.666 37 H 0.018 0.982 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.010 0.990 46 H 0.014 0.986 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -6.233 23.345 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.024 4.024 3 H 0.094 0.906 4 C -0.174 4.174 5 C 0.141 3.859 6 H 0.136 0.864 7 O -0.318 6.318 8 C -0.085 4.085 9 C -0.234 4.234 10 C -0.234 4.234 11 C -0.115 4.115 12 O -0.067 6.067 13 N -0.295 5.295 14 C -0.054 4.054 15 C -0.057 4.057 16 C -0.168 4.168 17 C -0.185 4.185 18 C -0.004 4.004 19 C -0.543 4.543 20 H 0.076 0.924 21 C -0.146 4.146 22 N -0.539 5.539 23 Si 0.715 3.285 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.203 1.203 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.220 0.780 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.217 0.783 36 H 0.153 0.847 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.028 0.972 46 H 0.032 0.968 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.881 -5.636 23.013 23.710 hybrid contribution -0.853 -0.617 -0.551 1.189 sum -1.734 -6.253 22.462 23.380 Atomic orbital electron populations 1.22522 0.97684 1.01887 1.02080 1.21465 0.91916 0.98065 0.90991 0.90570 1.22356 0.94988 1.01971 0.98042 1.20378 0.91616 0.95794 0.78112 0.86431 1.86753 1.74063 1.25481 1.45524 1.23908 1.03874 0.81269 0.99489 1.21601 1.07648 1.00868 0.93269 1.21828 1.07455 0.92815 1.01287 1.24027 1.04544 1.00441 0.82447 1.83999 1.65263 1.27321 1.30129 1.60667 1.55977 1.09485 1.03350 1.22060 0.98217 0.94960 0.90134 1.20593 0.95076 0.95913 0.94094 1.21540 0.95535 0.99978 0.99714 1.21757 0.98604 0.97953 1.00155 1.19115 0.96638 0.93747 0.90870 1.21221 1.42624 0.96289 0.94150 0.92378 1.25017 0.95955 0.94836 0.98839 1.69964 1.49374 1.08973 1.25598 0.86738 0.79471 0.79596 0.82661 1.20417 1.21505 1.20313 0.92687 0.92610 0.92310 0.91101 0.91291 0.78009 0.83566 0.83641 0.78302 0.84738 0.96412 0.91821 0.93254 0.93390 0.94335 0.94383 0.91947 0.94851 0.97154 0.96782 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.16 37.16 0.34 -1.52 16 2 C 0.09 0.95 2.59 -67.71 -0.18 0.77 16 3 H 0.08 0.90 7.80 -51.93 -0.40 0.49 16 4 C -0.14 -1.28 4.64 -26.73 -0.12 -1.40 16 5 C 0.20 2.14 3.43 -27.88 -0.10 2.04 16 6 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 7 O -0.52 -6.55 11.51 -40.03 -0.46 -7.02 16 8 C -0.03 -0.38 6.20 -35.62 -0.22 -0.60 16 9 C -0.21 -2.18 10.81 -39.70 -0.43 -2.61 16 10 C -0.21 -1.97 10.91 -39.70 -0.43 -2.40 16 11 C -0.05 -0.42 12.09 29.42 0.36 -0.06 16 12 O -0.17 -1.91 10.52 0.92 0.01 -1.90 16 13 N -0.66 -8.79 3.78 -106.73 -0.40 -9.19 16 14 C 0.07 1.27 4.45 -3.82 -0.02 1.25 16 15 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 16 C -0.11 -2.18 8.06 37.16 0.30 -1.88 16 17 C -0.13 -2.36 7.89 37.16 0.29 -2.06 16 18 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 19 C -0.50 -13.99 7.65 -34.44 -0.26 -14.25 16 20 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 21 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 23 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.37 4.09 8.93 45.56 0.41 4.50 16 33 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.33 4.33 6.51 -39.30 -0.26 4.07 16 37 H 0.02 0.31 7.44 -51.93 -0.39 -0.08 16 38 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 39 H 0.05 0.86 7.47 -51.93 -0.39 0.48 16 40 H 0.05 1.02 6.62 -51.93 -0.34 0.68 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.27 6.62 -51.93 -0.34 0.92 16 44 H 0.03 0.52 6.57 -51.93 -0.34 0.17 16 45 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -31.07 372.82 -7.66 -38.73 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.37 Total: 5.11 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -0.77 Total: -21.73 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.33 Total: -35.71 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.45 Total: -8.91 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.07 -7.66 -38.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305698291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.256 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds