Wall clock time and date at job start Tue Mar 31 2020 07:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 5 5 C 1.53003 * 109.46992 * 185.00330 * 4 2 1 6 6 H 1.08997 * 109.47157 * 54.99681 * 5 4 2 7 7 O 1.42908 * 109.46771 * 294.99790 * 5 4 2 8 8 C 1.50696 * 109.47037 * 175.00225 * 5 4 2 9 9 C 1.34525 * 125.78456 * 264.71412 * 8 5 4 10 10 C 1.41386 * 106.83716 * 179.88896 * 9 8 5 11 11 C 1.34519 * 106.84030 * 0.37476 * 10 9 8 12 12 O 1.34302 * 108.42273 * 359.76786 * 11 10 9 13 13 N 1.46898 * 109.47006 * 240.00218 * 2 1 3 14 14 C 1.46906 * 110.99961 * 84.99970 * 13 2 1 15 15 C 1.52993 * 109.47228 * 179.97438 * 14 13 2 16 16 C 1.53003 * 109.47095 * 299.99967 * 15 14 13 17 17 C 1.53004 * 109.47155 * 59.99802 * 15 14 13 18 18 C 1.52999 * 109.47582 * 180.02562 * 15 14 13 19 19 C 1.50694 * 109.47615 * 179.97438 * 18 15 14 20 20 H 1.08004 * 120.00272 * 0.02562 * 19 18 15 21 21 C 1.37882 * 120.00232 * 179.97438 * 19 18 15 22 22 N 1.31516 * 119.99610 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00132 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47036 * 60.00228 * 23 21 19 25 25 H 1.48493 * 109.47072 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47207 * 300.00455 * 23 21 19 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 30 30 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 31 31 H 1.09002 * 109.47223 * 64.99920 * 4 2 1 32 32 H 0.96695 * 113.99548 * 299.99952 * 7 5 4 33 33 H 1.07999 * 126.57994 * 0.02562 * 9 8 5 34 34 H 1.08001 * 126.57818 * 180.11550 * 10 9 8 35 35 H 1.07999 * 125.78546 * 179.75111 * 11 10 9 36 36 H 1.00893 * 111.00338 * 321.04590 * 13 2 1 37 37 H 1.08996 * 109.46971 * 299.99790 * 14 13 2 38 38 H 1.08994 * 109.47376 * 59.99710 * 14 13 2 39 39 H 1.08994 * 109.47454 * 60.00142 * 16 15 14 40 40 H 1.09001 * 109.47127 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.47286 * 299.99668 * 16 15 14 42 42 H 1.08998 * 109.47179 * 60.00601 * 17 15 14 43 43 H 1.09004 * 109.47026 * 180.02562 * 17 15 14 44 44 H 1.08994 * 109.47190 * 299.99733 * 17 15 14 45 45 H 1.09005 * 109.46588 * 299.99907 * 18 15 14 46 46 H 1.09001 * 109.47422 * 59.99419 * 18 15 14 47 47 H 0.97006 * 119.99290 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 1 3.8571 0.4358 1.2677 7 8 4.1393 -1.3164 0.2101 8 6 4.0571 -1.2159 2.6042 9 6 4.3195 -0.5408 3.7378 10 6 4.7514 -1.4922 4.6903 11 6 4.7351 -2.6905 4.0793 12 8 4.3136 -2.5170 2.8160 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2227 -2.3469 15 6 2.5962 -0.5326 -3.5742 16 6 3.9935 -1.0848 -3.2852 17 6 1.6473 -1.6891 -3.8954 18 6 2.6622 0.4206 -4.7691 19 6 3.1688 -0.3232 -5.9778 20 1 3.4184 -1.3713 -5.9016 21 6 3.3128 0.3338 -7.1814 22 7 3.0084 1.6099 -7.2744 23 14 3.9401 -0.5885 -8.6799 24 1 3.0189 -1.7108 -8.9918 25 1 4.0042 0.3368 -9.8396 26 1 5.2962 -1.1245 -8.3993 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6055 -0.2618 2.1369 31 1 1.7517 -1.7716 1.2055 32 1 3.9206 -2.2580 0.1870 33 1 4.2175 0.5233 3.8916 34 1 5.0430 -1.2942 5.7112 35 1 5.0138 -3.6323 4.5285 36 1 1.4497 -1.4978 -1.4101 37 1 1.0871 0.6164 -2.5525 38 1 2.7588 1.0463 -2.1183 39 1 3.9470 -1.7638 -2.4339 40 1 4.3594 -1.6233 -4.1594 41 1 4.6696 -0.2610 -3.0564 42 1 0.6518 -1.2957 -4.1014 43 1 2.0135 -2.2275 -4.7696 44 1 1.6008 -2.3681 -3.0441 45 1 1.6668 0.8143 -4.9752 46 1 3.3384 1.2442 -4.5400 47 1 3.1101 2.0722 -8.1212 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305698291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:00 Heat of formation + Delta-G solvation = -73.508564 kcal Electronic energy + Delta-G solvation = -24586.323416 eV Core-core repulsion = 21155.356928 eV Total energy + Delta-G solvation = -3430.966488 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.44671 -39.64448 -38.21830 -36.31954 -34.45909 -33.94945 -32.24759 -30.82788 -28.82705 -28.56656 -27.79021 -26.56428 -24.78942 -23.94920 -22.64486 -21.65889 -21.31121 -19.46242 -18.70817 -18.29282 -17.17239 -16.83964 -16.69197 -16.35813 -16.12561 -15.50897 -15.39497 -15.35681 -14.52255 -14.41292 -14.22855 -13.95919 -13.81303 -13.70388 -13.38719 -13.34689 -13.16926 -12.73873 -12.73392 -12.67404 -12.49242 -12.36498 -12.24167 -12.18014 -11.99580 -11.84328 -11.66224 -11.30558 -10.93193 -10.80005 -10.77369 -10.64145 -10.47937 -9.35152 -8.96770 -8.12108 -6.18860 0.83997 1.40980 1.43752 1.50870 1.73456 2.11866 2.45090 3.21515 3.37214 3.59422 3.78389 4.02019 4.15173 4.20096 4.24744 4.32119 4.34303 4.37852 4.49602 4.54087 4.58565 4.79466 4.86872 4.89179 4.92685 4.98891 5.02834 5.07133 5.11714 5.17971 5.20950 5.27478 5.30809 5.32938 5.34697 5.56685 5.61247 5.64191 5.65656 5.78259 5.96112 5.97087 6.23040 6.26994 6.43133 6.73802 6.96580 7.01996 7.48177 9.00179 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.003078 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.479290 B = 9093.572170 C = 9659.935304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.087 3.913 3 H 0.067 0.933 4 C -0.121 4.121 5 C 0.203 3.797 6 H 0.113 0.887 7 O -0.536 6.536 8 C -0.052 4.052 9 C -0.224 4.224 10 C -0.229 4.229 11 C -0.048 4.048 12 O -0.187 6.187 13 N -0.656 5.656 14 C 0.090 3.910 15 C -0.052 4.052 16 C -0.097 4.097 17 C -0.119 4.119 18 C 0.040 3.960 19 C -0.513 4.513 20 H 0.065 0.935 21 C -0.006 4.006 22 N -0.939 5.939 23 Si 0.956 3.044 24 H -0.267 1.267 25 H -0.288 1.288 26 H -0.269 1.269 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.379 0.621 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.233 0.767 36 H 0.339 0.661 37 H 0.011 0.989 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.029 0.971 41 H 0.020 0.980 42 H 0.033 0.967 43 H 0.043 0.957 44 H 0.070 0.930 45 H -0.019 1.019 46 H -0.021 1.021 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.905 -8.277 25.063 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.024 4.024 3 H 0.085 0.915 4 C -0.159 4.159 5 C 0.143 3.857 6 H 0.131 0.869 7 O -0.341 6.341 8 C -0.103 4.103 9 C -0.243 4.243 10 C -0.247 4.247 11 C -0.115 4.115 12 O -0.083 6.083 13 N -0.288 5.288 14 C -0.039 4.039 15 C -0.052 4.052 16 C -0.155 4.155 17 C -0.177 4.177 18 C 0.002 3.998 19 C -0.551 4.551 20 H 0.083 0.917 21 C -0.202 4.202 22 N -0.581 5.581 23 Si 0.781 3.219 24 H -0.192 1.192 25 H -0.213 1.213 26 H -0.194 1.194 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.227 0.773 33 H 0.175 0.825 34 H 0.183 0.817 35 H 0.250 0.750 36 H 0.159 0.841 37 H 0.029 0.971 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.039 0.961 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.000 1.000 46 H -0.002 1.002 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.040 -7.698 24.753 25.943 hybrid contribution -0.790 0.048 -0.986 1.264 sum -1.830 -7.650 23.767 25.035 Atomic orbital electron populations 1.22453 0.96606 1.02488 1.02091 1.21510 0.92728 0.97650 0.90466 0.91484 1.22217 0.94110 1.02084 0.97480 1.20359 0.92213 0.95356 0.77745 0.86943 1.86716 1.74710 1.26129 1.46502 1.23882 1.05184 0.81537 0.99689 1.21919 1.07209 1.01735 0.93451 1.22172 1.07621 0.92733 1.02222 1.24773 1.03232 1.01864 0.81613 1.83985 1.65688 1.27400 1.31270 1.60585 1.56681 1.08952 1.02537 1.21699 0.97168 0.94704 0.90332 1.20451 0.96161 0.95519 0.93101 1.21415 0.94656 0.99523 0.99870 1.21659 0.97583 0.97542 1.00881 1.19011 0.93811 0.93814 0.93129 1.21610 1.41873 0.96711 0.94902 0.91662 1.25936 0.96332 0.95674 1.02293 1.70114 1.50843 1.10726 1.26399 0.85638 0.79235 0.78420 0.78600 1.19171 1.21345 1.19419 0.91759 0.90962 0.93967 0.89541 0.90786 0.77316 0.82519 0.81661 0.75043 0.84078 0.97093 0.93450 0.90490 0.95191 0.96062 0.94760 0.93828 0.91109 1.00029 1.00229 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 9.16 71.98 0.66 -2.59 16 2 C 0.09 1.77 2.59 44.92 0.12 1.89 16 3 H 0.07 1.52 7.80 -2.39 -0.02 1.50 16 4 C -0.12 -2.03 4.64 30.59 0.14 -1.88 16 5 C 0.20 4.08 3.43 29.85 0.10 4.18 16 6 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 7 O -0.54 -13.04 11.51 -144.39 -1.66 -14.70 16 8 C -0.05 -1.07 6.20 24.83 0.15 -0.92 16 9 C -0.22 -4.21 10.81 22.19 0.24 -3.97 16 10 C -0.23 -3.71 10.91 22.19 0.24 -3.46 16 11 C -0.05 -0.74 12.09 66.97 0.81 0.07 16 12 O -0.19 -3.84 10.52 2.11 0.02 -3.82 16 13 N -0.66 -16.47 3.78 -491.58 -1.86 -18.33 16 14 C 0.09 3.08 4.45 86.30 0.38 3.47 16 15 C -0.05 -2.08 0.60 -52.18 -0.03 -2.12 16 16 C -0.10 -3.82 8.06 71.98 0.58 -3.24 16 17 C -0.12 -4.30 7.89 71.98 0.57 -3.73 16 18 C 0.04 2.12 4.04 29.85 0.12 2.24 16 19 C -0.51 -29.03 7.65 25.60 0.20 -28.84 16 20 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 21 C -0.01 -0.35 5.46 84.66 0.46 0.12 16 22 N -0.94 -58.62 13.29 21.45 0.28 -58.33 16 23 Si 0.96 45.30 29.54 68.60 2.03 47.32 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 27 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.92 7.45 -2.39 -0.02 0.90 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.38 7.73 8.93 -74.06 -0.66 7.07 16 33 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 34 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.23 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.34 7.95 6.51 -89.70 -0.58 7.37 16 37 H 0.01 0.39 7.44 -2.39 -0.02 0.37 16 38 H 0.05 1.76 8.05 -2.39 -0.02 1.75 16 39 H 0.08 2.58 7.47 -2.39 -0.02 2.56 16 40 H 0.03 1.25 6.62 -2.39 -0.02 1.24 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.04 1.73 6.62 -2.38 -0.02 1.71 16 44 H 0.07 2.01 6.57 -2.39 -0.02 1.99 16 45 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 46 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 47 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -68.67 372.82 3.26 -65.41 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.30 Total: 21.23 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 4.74 Total: -38.78 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -1.57 Total: -76.66 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -1.64 Total: -18.52 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.67 3.26 -65.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305698291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.103 kcal (2) G-P(sol) polarization free energy of solvation -68.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds