Wall clock time and date at job start Tue Mar 31 2020 07:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20754 * 120.00230 * 2 1 4 4 C 1.50710 * 120.00067 * 180.02562 * 2 1 3 5 5 H 1.09001 * 112.90582 * 23.74190 * 4 2 1 6 6 C 1.54048 * 113.69270 * 252.42100 * 4 2 1 7 7 C 1.53782 * 87.07528 * 220.05000 * 6 4 2 8 8 H 1.09000 * 113.68926 * 270.86926 * 7 6 4 9 9 C 1.52998 * 113.61944 * 139.97783 * 7 6 4 10 10 C 1.50701 * 109.47025 * 87.49862 * 9 7 6 11 11 O 1.21274 * 119.99919 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99460 * 180.02562 * 10 9 7 13 13 C 1.46495 * 120.00525 * 0.02562 * 12 10 9 14 14 C 1.46502 * 119.99460 * 180.02562 * 12 10 9 15 15 H 1.09003 * 109.47379 * 359.97438 * 14 12 10 16 16 C 1.53005 * 109.46874 * 240.00150 * 14 12 10 17 17 C 1.50697 * 109.47220 * 120.00114 * 14 12 10 18 18 H 1.07994 * 120.00047 * 359.97438 * 17 14 12 19 19 C 1.37876 * 119.99945 * 179.97438 * 17 14 12 20 20 N 1.31519 * 119.99985 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00043 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46984 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47367 * 119.99913 * 21 19 17 24 24 H 1.48503 * 109.46762 * 240.00311 * 21 19 17 25 25 C 1.53781 * 113.61390 * 154.99324 * 4 2 1 26 26 C 1.52997 * 113.61512 * 25.43443 * 25 4 2 27 27 C 1.52999 * 113.61163 * 254.61244 * 25 4 2 28 28 H 1.08997 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46959 * 299.99486 * 1 2 3 30 30 H 1.09000 * 109.47402 * 59.99338 * 1 2 3 31 31 H 1.09001 * 113.62128 * 105.50533 * 6 4 2 32 32 H 1.09002 * 113.68829 * 334.60308 * 6 4 2 33 33 H 1.08994 * 109.47546 * 207.50624 * 9 7 6 34 34 H 1.09008 * 109.46954 * 327.50442 * 9 7 6 35 35 H 1.09002 * 109.46691 * 89.99768 * 13 12 10 36 36 H 1.08997 * 109.47449 * 209.99529 * 13 12 10 37 37 H 1.09001 * 109.47056 * 330.00697 * 13 12 10 38 38 H 1.08997 * 109.47110 * 60.00106 * 16 14 12 39 39 H 1.08993 * 109.47311 * 179.97438 * 16 14 12 40 40 H 1.09001 * 109.47176 * 300.00287 * 16 14 12 41 41 H 0.97001 * 119.99785 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47153 * 279.13255 * 26 25 4 43 43 H 1.09001 * 109.46832 * 159.13446 * 26 25 4 44 44 H 1.09004 * 109.47261 * 39.13427 * 26 25 4 45 45 H 1.09003 * 109.46687 * 200.87007 * 27 25 4 46 46 H 1.08993 * 109.47313 * 320.85949 * 27 25 4 47 47 H 1.08992 * 109.47161 * 80.87337 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0006 5 1 1.6767 -2.1320 -0.4052 6 6 2.9390 -1.6288 1.3440 7 6 4.1350 -2.1446 0.5265 8 1 4.0641 -3.2004 0.2652 9 6 5.4929 -1.7703 1.1238 10 6 5.9088 -2.8195 2.1225 11 8 5.1901 -3.7730 2.3351 12 7 7.0794 -2.6982 2.7793 13 6 7.9473 -1.5462 2.5229 14 6 7.4840 -3.7184 3.7497 15 1 6.7173 -4.4912 3.8054 16 6 7.6576 -3.0728 5.1260 17 6 8.7888 -4.3350 3.3159 18 1 9.2686 -4.0007 2.4079 19 6 9.3701 -5.3260 4.0781 20 7 8.7862 -5.7328 5.1841 21 14 10.9879 -6.0898 3.5407 22 1 11.4347 -5.4612 2.2717 23 1 12.0134 -5.8678 4.5915 24 1 10.8013 -7.5481 3.3313 25 6 3.6744 -1.1999 -0.5962 26 6 4.2763 0.2035 -0.5017 27 6 3.7965 -1.8058 -1.9958 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 2.4310 -2.4073 1.9133 32 1 3.1672 -0.7471 1.9428 33 1 6.2358 -1.7109 0.3285 34 1 5.4165 -0.8040 1.6226 35 1 7.6890 -0.7374 3.2066 36 1 8.9875 -1.8335 2.6765 37 1 7.8110 -1.2102 1.4949 38 1 6.7138 -2.6269 5.4397 39 1 7.9581 -3.8319 5.8481 40 1 8.4241 -2.2998 5.0706 41 1 9.1950 -6.4302 5.7202 42 1 3.8855 0.8217 -1.3100 43 1 5.3613 0.1399 -0.5849 44 1 4.0110 0.6489 0.4572 45 1 4.8418 -2.0354 -2.2023 46 1 3.2064 -2.7207 -2.0483 47 1 3.4284 -1.0930 -2.7336 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332067870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:05 Heat of formation + Delta-G solvation = -60.664547 kcal Electronic energy + Delta-G solvation = -24934.891819 eV Core-core repulsion = 21504.482289 eV Total energy + Delta-G solvation = -3430.409530 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14821 -39.01479 -37.81521 -35.23290 -32.87050 -31.40968 -31.05999 -29.86482 -28.73008 -27.38768 -26.02555 -25.21648 -24.63140 -22.55103 -21.10469 -19.59104 -18.26126 -18.08122 -16.57771 -16.32104 -16.00670 -15.44390 -15.19344 -15.15711 -14.92571 -14.34802 -14.09488 -13.72158 -13.35748 -13.07546 -12.81480 -12.58159 -12.52631 -12.41859 -12.26587 -12.17303 -11.85448 -11.76686 -11.62375 -11.49055 -11.42461 -11.05904 -10.90015 -10.87377 -10.77779 -10.65966 -10.34075 -10.21399 -10.14729 -9.93021 -9.16128 -9.10973 -8.80982 -8.40615 -7.52389 -6.05902 -4.13693 1.79201 3.26256 3.34068 3.36871 3.49432 3.89130 4.04433 4.30651 4.40935 4.51390 4.72663 4.77087 4.92634 5.15134 5.19019 5.23245 5.24913 5.33568 5.43445 5.44370 5.59493 5.65260 5.69096 5.72978 5.79730 5.84913 5.92760 5.95737 6.00233 6.06644 6.07632 6.13073 6.34849 6.41190 6.41783 6.62154 6.78459 6.87034 7.10426 7.42844 7.47975 7.57760 7.74764 8.04990 8.23252 8.60284 8.86410 9.14167 9.53083 10.99383 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.029022 B = 0.003322 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.560356 B = 8425.983499 C = 8597.881707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.366 3.634 3 O -0.453 6.453 4 C -0.164 4.164 5 H 0.111 0.889 6 C -0.108 4.108 7 C -0.078 4.078 8 H 0.104 0.896 9 C -0.129 4.129 10 C 0.502 3.498 11 O -0.555 6.555 12 N -0.596 5.596 13 C 0.084 3.916 14 C 0.257 3.743 15 H 0.062 0.938 16 C -0.146 4.146 17 C -0.524 4.524 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.898 3.102 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.067 4.067 26 C -0.120 4.120 27 C -0.137 4.137 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.010 0.990 39 H 0.092 0.908 40 H 0.028 0.972 41 H 0.262 0.738 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.296 11.437 -11.071 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.242 3.758 3 O -0.327 6.327 4 C -0.183 4.183 5 H 0.129 0.871 6 C -0.145 4.145 7 C -0.097 4.097 8 H 0.122 0.878 9 C -0.169 4.169 10 C 0.290 3.710 11 O -0.434 6.434 12 N -0.327 5.327 13 C -0.060 4.060 14 C 0.157 3.843 15 H 0.080 0.920 16 C -0.204 4.204 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.725 3.275 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.067 4.067 26 C -0.176 4.176 27 C -0.194 4.194 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.111 0.889 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.299 11.357 -10.785 19.914 hybrid contribution 0.883 -0.501 -0.226 1.040 sum -11.416 10.857 -11.011 19.221 Atomic orbital electron populations 1.22312 0.95096 1.04495 1.04358 1.24457 0.91498 0.90128 0.69725 1.90405 1.71267 1.35314 1.35734 1.23413 0.96634 0.97405 1.00847 0.87056 1.22871 0.96523 1.01297 0.93845 1.22377 0.92761 0.99928 0.94588 0.87806 1.21681 0.97796 0.98884 0.98513 1.20461 0.81555 0.86943 0.82079 1.90619 1.53019 1.33400 1.66365 1.48247 1.18369 1.24407 1.41659 1.21582 0.96907 0.88392 0.99111 1.18906 0.96231 0.85457 0.83718 0.91979 1.22077 0.96969 1.00512 1.00871 1.21375 1.06217 1.20112 1.08597 0.92242 1.24900 0.97716 0.96359 0.94870 1.69897 1.39028 1.29415 1.14287 0.86451 0.83291 0.79178 0.78541 1.19825 1.20954 1.20924 1.21880 0.93204 0.96837 0.94809 1.21733 0.99117 0.93508 1.03287 1.21760 1.02249 1.00202 0.95222 0.90126 0.89259 0.89355 0.90228 0.89982 0.89359 0.89511 0.94039 0.90247 0.92813 0.97114 0.88925 0.95239 0.92784 0.92620 0.93184 0.91004 0.92053 0.92416 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.39 10.33 36.00 0.37 -1.01 16 2 C 0.37 3.63 6.66 -29.03 -0.19 3.44 16 3 O -0.45 -5.78 13.26 6.00 0.08 -5.70 16 4 C -0.16 -1.64 3.52 -90.81 -0.32 -1.96 16 5 H 0.11 0.92 7.93 -51.93 -0.41 0.51 16 6 C -0.11 -1.32 6.84 -25.78 -0.18 -1.49 16 7 C -0.08 -1.04 2.66 -89.80 -0.24 -1.28 16 8 H 0.10 1.55 7.63 -51.93 -0.40 1.16 16 9 C -0.13 -1.89 2.87 -27.88 -0.08 -1.97 16 10 C 0.50 10.26 7.67 -10.98 -0.08 10.17 16 11 O -0.55 -13.37 15.08 5.56 0.08 -13.29 16 12 N -0.60 -12.78 2.75 -175.26 -0.48 -13.26 16 13 C 0.08 1.43 9.24 59.84 0.55 1.98 16 14 C 0.26 6.63 2.64 -69.08 -0.18 6.45 16 15 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 16 C -0.15 -3.55 8.97 37.16 0.33 -3.21 16 17 C -0.52 -14.26 7.99 -34.44 -0.28 -14.54 16 18 H 0.06 1.59 7.33 -52.49 -0.38 1.21 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 21 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 C -0.07 -0.74 1.22 -153.69 -0.19 -0.92 16 26 C -0.12 -1.36 6.22 37.16 0.23 -1.13 16 27 C -0.14 -1.34 9.18 37.16 0.34 -1.00 16 28 H 0.08 0.42 7.96 -51.93 -0.41 0.00 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.03 7.35 -51.93 -0.38 0.65 16 33 H 0.09 1.18 7.13 -51.93 -0.37 0.81 16 34 H 0.09 1.16 7.26 -51.92 -0.38 0.79 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 37 H 0.05 0.74 6.44 -51.93 -0.33 0.41 16 38 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 40 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.05 0.65 7.43 -51.93 -0.39 0.26 16 43 H 0.05 0.54 7.31 -51.93 -0.38 0.16 16 44 H 0.07 0.90 5.68 -51.93 -0.29 0.60 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.53 7.98 -51.93 -0.41 0.11 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -31.76 364.98 -7.29 -39.05 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.07 Total: 1.10 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 0.00 Total: -4.82 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.14 Total: -37.93 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.16 Total: -18.99 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.76 -7.29 -39.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332067870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.619 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds