Wall clock time and date at job start Tue Mar 31 2020 07:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20754 * 120.00230 * 2 1 4 4 C 1.50710 * 120.00067 * 180.02562 * 2 1 3 5 5 H 1.09001 * 112.90582 * 23.74190 * 4 2 1 6 6 C 1.54048 * 113.69270 * 252.42100 * 4 2 1 7 7 C 1.53782 * 87.07528 * 220.05000 * 6 4 2 8 8 H 1.09000 * 113.68926 * 270.86926 * 7 6 4 9 9 C 1.52998 * 113.61944 * 139.97783 * 7 6 4 10 10 C 1.50701 * 109.47025 * 87.49862 * 9 7 6 11 11 O 1.21274 * 119.99919 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99460 * 180.02562 * 10 9 7 13 13 C 1.46495 * 120.00525 * 0.02562 * 12 10 9 14 14 C 1.46502 * 119.99460 * 180.02562 * 12 10 9 15 15 H 1.09003 * 109.47379 * 359.97438 * 14 12 10 16 16 C 1.53005 * 109.46874 * 240.00150 * 14 12 10 17 17 C 1.50697 * 109.47220 * 120.00114 * 14 12 10 18 18 H 1.07994 * 120.00047 * 359.97438 * 17 14 12 19 19 C 1.37876 * 119.99945 * 179.97438 * 17 14 12 20 20 N 1.31519 * 119.99985 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00043 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46984 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47367 * 119.99913 * 21 19 17 24 24 H 1.48503 * 109.46762 * 240.00311 * 21 19 17 25 25 C 1.53781 * 113.61390 * 154.99324 * 4 2 1 26 26 C 1.52997 * 113.61512 * 25.43443 * 25 4 2 27 27 C 1.52999 * 113.61163 * 254.61244 * 25 4 2 28 28 H 1.08997 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46959 * 299.99486 * 1 2 3 30 30 H 1.09000 * 109.47402 * 59.99338 * 1 2 3 31 31 H 1.09001 * 113.62128 * 105.50533 * 6 4 2 32 32 H 1.09002 * 113.68829 * 334.60308 * 6 4 2 33 33 H 1.08994 * 109.47546 * 207.50624 * 9 7 6 34 34 H 1.09008 * 109.46954 * 327.50442 * 9 7 6 35 35 H 1.09002 * 109.46691 * 89.99768 * 13 12 10 36 36 H 1.08997 * 109.47449 * 209.99529 * 13 12 10 37 37 H 1.09001 * 109.47056 * 330.00697 * 13 12 10 38 38 H 1.08997 * 109.47110 * 60.00106 * 16 14 12 39 39 H 1.08993 * 109.47311 * 179.97438 * 16 14 12 40 40 H 1.09001 * 109.47176 * 300.00287 * 16 14 12 41 41 H 0.97001 * 119.99785 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47153 * 279.13255 * 26 25 4 43 43 H 1.09001 * 109.46832 * 159.13446 * 26 25 4 44 44 H 1.09004 * 109.47261 * 39.13427 * 26 25 4 45 45 H 1.09003 * 109.46687 * 200.87007 * 27 25 4 46 46 H 1.08993 * 109.47313 * 320.85949 * 27 25 4 47 47 H 1.08992 * 109.47161 * 80.87337 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0006 5 1 1.6767 -2.1320 -0.4052 6 6 2.9390 -1.6288 1.3440 7 6 4.1350 -2.1446 0.5265 8 1 4.0641 -3.2004 0.2652 9 6 5.4929 -1.7703 1.1238 10 6 5.9088 -2.8195 2.1225 11 8 5.1901 -3.7730 2.3351 12 7 7.0794 -2.6982 2.7793 13 6 7.9473 -1.5462 2.5229 14 6 7.4840 -3.7184 3.7497 15 1 6.7173 -4.4912 3.8054 16 6 7.6576 -3.0728 5.1260 17 6 8.7888 -4.3350 3.3159 18 1 9.2686 -4.0007 2.4079 19 6 9.3701 -5.3260 4.0781 20 7 8.7862 -5.7328 5.1841 21 14 10.9879 -6.0898 3.5407 22 1 11.4347 -5.4612 2.2717 23 1 12.0134 -5.8678 4.5915 24 1 10.8013 -7.5481 3.3313 25 6 3.6744 -1.1999 -0.5962 26 6 4.2763 0.2035 -0.5017 27 6 3.7965 -1.8058 -1.9958 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 2.4310 -2.4073 1.9133 32 1 3.1672 -0.7471 1.9428 33 1 6.2358 -1.7109 0.3285 34 1 5.4165 -0.8040 1.6226 35 1 7.6890 -0.7374 3.2066 36 1 8.9875 -1.8335 2.6765 37 1 7.8110 -1.2102 1.4949 38 1 6.7138 -2.6269 5.4397 39 1 7.9581 -3.8319 5.8481 40 1 8.4241 -2.2998 5.0706 41 1 9.1950 -6.4302 5.7202 42 1 3.8855 0.8217 -1.3100 43 1 5.3613 0.1399 -0.5849 44 1 4.0110 0.6489 0.4572 45 1 4.8418 -2.0354 -2.2023 46 1 3.2064 -2.7207 -2.0483 47 1 3.4284 -1.0930 -2.7336 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332067870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:05 Heat of formation + Delta-G solvation = -78.447524 kcal Electronic energy + Delta-G solvation = -24935.662946 eV Core-core repulsion = 21504.482289 eV Total energy + Delta-G solvation = -3431.180658 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.08935 -40.51948 -38.82793 -37.04645 -34.80659 -32.48749 -32.11378 -31.12022 -30.01532 -28.23275 -27.52189 -27.30901 -25.69527 -23.60887 -22.71986 -20.61942 -19.66707 -19.18606 -18.49983 -17.75816 -17.18142 -16.93218 -16.46639 -16.23618 -16.03391 -15.81964 -15.34199 -14.74713 -14.56823 -14.26123 -14.13364 -14.01045 -13.59279 -13.50929 -13.39511 -13.13399 -13.10140 -13.06052 -12.90628 -12.87129 -12.70711 -12.63219 -12.56089 -12.33580 -12.19815 -12.10456 -11.88572 -11.78044 -11.29524 -11.17378 -10.89679 -10.60273 -10.39635 -9.94672 -9.27974 -8.14657 -6.31242 1.02104 1.40298 1.41843 1.53279 1.89309 2.34296 2.53517 3.13120 3.19731 3.39239 3.53977 3.77529 3.86495 3.97598 4.32451 4.34076 4.35778 4.46802 4.54518 4.60860 4.63739 4.69041 4.71087 4.75042 4.78836 4.85907 4.87051 4.90317 4.97245 4.99610 5.04784 5.07610 5.09160 5.19519 5.21419 5.26769 5.38960 5.47723 5.51039 5.62575 5.67043 5.69720 6.05685 6.17654 6.67744 6.77679 6.90111 7.34221 7.54527 8.89873 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.029022 B = 0.003322 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.560356 B = 8425.983499 C = 8597.881707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.367 3.633 3 O -0.484 6.484 4 C -0.155 4.155 5 H 0.131 0.869 6 C -0.111 4.111 7 C -0.085 4.085 8 H 0.084 0.916 9 C -0.114 4.114 10 C 0.492 3.508 11 O -0.601 6.601 12 N -0.605 5.605 13 C 0.080 3.920 14 C 0.261 3.739 15 H 0.008 0.992 16 C -0.131 4.131 17 C -0.537 4.537 18 H 0.061 0.939 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.965 3.035 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.285 1.285 25 C -0.059 4.059 26 C -0.115 4.115 27 C -0.136 4.136 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.017 0.983 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.264 0.736 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.224 12.918 -12.917 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.245 3.755 3 O -0.360 6.360 4 C -0.174 4.174 5 H 0.149 0.851 6 C -0.149 4.149 7 C -0.104 4.104 8 H 0.102 0.898 9 C -0.153 4.153 10 C 0.282 3.718 11 O -0.484 6.484 12 N -0.336 5.336 13 C -0.062 4.062 14 C 0.159 3.841 15 H 0.026 0.974 16 C -0.190 4.190 17 C -0.576 4.576 18 H 0.079 0.921 19 C -0.186 4.186 20 N -0.558 5.558 21 Si 0.790 3.210 22 H -0.188 1.188 23 H -0.200 1.200 24 H -0.211 1.211 25 C -0.059 4.059 26 C -0.172 4.172 27 C -0.193 4.193 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.037 0.963 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.224 12.873 -12.649 21.798 hybrid contribution 0.816 -0.976 0.376 1.326 sum -11.409 11.898 -12.273 20.551 Atomic orbital electron populations 1.22315 0.92353 1.06049 1.05106 1.24795 0.92980 0.89279 0.68427 1.90403 1.72189 1.36145 1.37242 1.23430 0.96592 0.98469 0.98937 0.85064 1.22825 0.96601 1.00691 0.94783 1.22369 0.92374 0.99461 0.96188 0.89769 1.21673 0.98967 0.97316 0.97342 1.21484 0.80625 0.87445 0.82236 1.90591 1.54304 1.35674 1.67813 1.48284 1.19529 1.24743 1.41043 1.21819 0.95317 0.87107 1.01959 1.18488 0.94113 0.85810 0.85680 0.97416 1.21866 0.97714 0.99961 0.99475 1.21629 1.06686 1.20588 1.08678 0.92082 1.25756 1.01172 0.96802 0.94864 1.70038 1.40568 1.29859 1.15307 0.85399 0.79121 0.77872 0.78576 1.18830 1.20032 1.21103 1.21815 0.93447 0.95953 0.94709 1.21676 0.99567 0.93394 1.02570 1.21758 1.02393 1.00681 0.94491 0.88279 0.88777 0.88128 0.91332 0.90445 0.87357 0.87639 0.91967 0.91462 0.89190 0.96348 0.91490 0.93622 0.92678 0.92735 0.92433 0.92207 0.92241 0.91837 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.18 10.33 71.23 0.74 -1.45 16 2 C 0.37 6.57 6.66 29.10 0.19 6.76 16 3 O -0.48 -11.60 13.26 -1.43 -0.02 -11.62 16 4 C -0.16 -2.84 3.52 -10.92 -0.04 -2.87 16 5 H 0.13 1.86 7.93 -2.39 -0.02 1.84 16 6 C -0.11 -2.67 6.84 31.21 0.21 -2.45 16 7 C -0.09 -2.20 2.66 -10.27 -0.03 -2.23 16 8 H 0.08 2.54 7.63 -2.39 -0.02 2.52 16 9 C -0.11 -3.18 2.87 29.85 0.09 -3.10 16 10 C 0.49 20.26 7.67 87.66 0.67 20.94 16 11 O -0.60 -30.24 15.08 -3.01 -0.05 -30.28 16 12 N -0.61 -25.96 2.75 -826.80 -2.28 -28.24 16 13 C 0.08 2.57 9.24 127.77 1.18 3.75 16 14 C 0.26 13.87 2.64 44.25 0.12 13.99 16 15 H 0.01 0.50 6.90 -2.39 -0.02 0.48 16 16 C -0.13 -6.52 8.97 71.98 0.65 -5.87 16 17 C -0.54 -29.60 7.99 25.60 0.20 -29.40 16 18 H 0.06 3.26 7.33 -2.91 -0.02 3.24 16 19 C 0.01 0.74 5.30 84.65 0.45 1.19 16 20 N -0.92 -53.64 11.32 21.45 0.24 -53.39 16 21 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 C -0.06 -1.19 1.22 -51.65 -0.06 -1.25 16 26 C -0.12 -2.39 6.22 71.98 0.45 -1.94 16 27 C -0.14 -2.35 9.18 71.98 0.66 -1.69 16 28 H 0.10 0.71 7.96 -2.39 -0.02 0.69 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 1.91 7.35 -2.39 -0.02 1.89 16 33 H 0.11 2.61 7.13 -2.39 -0.02 2.60 16 34 H 0.11 2.60 7.26 -2.38 -0.02 2.58 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 2.33 7.02 -2.39 -0.02 2.31 16 37 H 0.09 2.20 6.44 -2.39 -0.02 2.19 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 40 H 0.04 2.05 7.67 -2.39 -0.02 2.03 16 41 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.05 1.15 7.43 -2.39 -0.02 1.13 16 43 H 0.06 1.08 7.31 -2.39 -0.02 1.06 16 44 H 0.06 1.40 5.68 -2.38 -0.01 1.38 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.06 1.02 7.98 -2.39 -0.02 1.00 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -71.56 364.98 6.34 -65.22 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.94 Total: 18.52 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 5.48 Total: -5.62 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.03 Total: -81.63 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.06 Total: -41.91 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -71.56 6.34 -65.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332067870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.226 kcal (2) G-P(sol) polarization free energy of solvation -71.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds