Wall clock time and date at job start Tue Mar 31 2020 06:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47670 * 2 1 4 4 N 1.46494 * 109.47391 * 175.00617 * 3 2 1 5 5 C 1.37096 * 120.00026 * 90.73257 * 4 3 2 6 6 H 1.08004 * 119.99879 * 314.97117 * 5 4 3 7 7 C 1.38953 * 119.99961 * 134.69701 * 5 4 3 8 8 N 1.31414 * 119.99883 * 160.50879 * 7 5 4 9 9 Si 1.86798 * 120.00274 * 340.50798 * 7 5 4 10 10 H 1.48495 * 109.47027 * 95.24523 * 9 7 5 11 11 H 1.48497 * 109.46953 * 215.24621 * 9 7 5 12 12 H 1.48500 * 109.46716 * 335.24502 * 9 7 5 13 13 C 1.34775 * 120.00123 * 270.72545 * 4 3 2 14 14 O 1.21292 * 120.00654 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00069 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.47377 * 179.97438 * 15 13 4 17 17 H 1.08991 * 112.85160 * 313.31009 * 16 15 13 18 18 C 1.53782 * 113.61104 * 84.50757 * 16 15 13 19 19 C 1.53780 * 87.08319 * 139.98346 * 18 16 15 20 20 H 1.08995 * 113.61612 * 89.19541 * 19 18 16 21 21 C 1.50702 * 113.61367 * 220.02131 * 19 18 16 22 22 C 1.50698 * 119.99555 * 255.49214 * 21 19 18 23 23 O 1.20756 * 120.00367 * 75.48884 * 21 19 18 24 24 C 1.53781 * 113.61260 * 181.99978 * 16 15 13 25 25 C 1.52994 * 113.61879 * 334.56809 * 24 16 15 26 26 C 1.53002 * 113.61110 * 105.47579 * 24 16 15 27 27 H 1.09000 * 109.47356 * 184.73793 * 1 2 3 28 28 H 1.08998 * 109.46990 * 304.74328 * 1 2 3 29 29 H 1.09002 * 109.47205 * 64.74459 * 1 2 3 30 30 H 1.09007 * 109.47462 * 239.99498 * 2 1 3 31 31 H 1.09006 * 109.47298 * 120.00226 * 2 1 3 32 32 H 1.09001 * 109.46706 * 55.00575 * 3 2 1 33 33 H 1.08996 * 109.46775 * 295.00808 * 3 2 1 34 34 H 0.96998 * 120.00297 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47141 * 299.99859 * 15 13 4 36 36 H 1.09003 * 109.47096 * 59.99347 * 15 13 4 37 37 H 1.09003 * 113.61383 * 254.52811 * 18 16 15 38 38 H 1.08998 * 113.61956 * 25.34716 * 18 16 15 39 39 H 1.09002 * 109.47302 * 59.99931 * 22 21 19 40 40 H 1.09000 * 109.47303 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.47126 * 299.99862 * 22 21 19 42 42 H 1.09000 * 109.47042 * 59.99969 * 25 24 16 43 43 H 1.09000 * 109.47442 * 180.02562 * 25 24 16 44 44 H 1.09002 * 109.47409 * 300.00001 * 25 24 16 45 45 H 1.09004 * 109.47446 * 59.99891 * 26 24 16 46 46 H 1.09002 * 109.46952 * 179.97438 * 26 24 16 47 47 H 1.08998 * 109.47207 * 299.99559 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4441 0.1202 5 6 4.2807 1.4256 -1.0066 6 1 4.0446 0.7507 -1.8161 7 6 5.3722 2.2793 -1.1097 8 7 6.3290 2.0211 -1.9728 9 14 5.4796 3.7938 -0.0217 10 1 6.2929 3.4825 1.1812 11 1 6.1173 4.9018 -0.7772 12 1 4.1140 4.2011 0.3959 13 6 4.0759 1.4640 1.3386 14 8 5.2847 1.4649 1.4383 15 6 3.2178 1.4839 2.5773 16 6 4.1132 1.5036 3.8178 17 1 4.9195 0.7717 3.7695 18 6 4.5833 2.9126 4.2159 19 6 4.3564 2.4902 5.6770 20 1 5.2294 2.0289 6.1387 21 6 3.7458 3.5719 6.5303 22 6 4.6008 4.3277 7.5145 23 8 2.5715 3.8330 6.4253 24 6 3.3319 1.4757 5.1420 25 6 1.9137 2.0385 5.0289 26 6 3.3805 0.1222 5.8538 27 1 -0.3634 -1.0241 0.0849 28 1 -0.3633 0.5857 0.8444 29 1 -0.3634 0.4385 -0.9294 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6055 1.9814 0.8419 33 1 1.7516 1.9298 -0.9313 34 1 7.0908 2.6171 -2.0451 35 1 2.5884 2.3738 2.5691 36 1 2.5886 0.5941 2.5978 37 1 5.6283 3.1085 3.9753 38 1 3.9159 3.7066 3.8808 39 1 5.4055 4.8349 6.9823 40 1 3.9894 5.0638 8.0366 41 1 5.0257 3.6308 8.2369 42 1 1.3472 1.4532 4.3046 43 1 1.4237 1.9869 6.0012 44 1 1.9600 3.0768 4.7004 45 1 4.4159 -0.1316 6.0816 46 1 2.8083 0.1780 6.7799 47 1 2.9524 -0.6439 5.2074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332071538.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:22 Heat of formation + Delta-G solvation = -53.972252 kcal Electronic energy + Delta-G solvation = -25707.028223 eV Core-core repulsion = 22276.908893 eV Total energy + Delta-G solvation = -3430.119330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03536 -38.91902 -37.71002 -35.22246 -32.83920 -31.49285 -31.29162 -30.68626 -29.36353 -27.28711 -26.03711 -25.12781 -23.41353 -22.25899 -21.18332 -19.88400 -18.90258 -17.98320 -17.01584 -16.13548 -15.84011 -15.42819 -15.11765 -15.00371 -14.58473 -14.31689 -13.97366 -13.68533 -13.42817 -13.20077 -13.07270 -12.76258 -12.65599 -12.36085 -12.20059 -12.12053 -12.06044 -11.92849 -11.74154 -11.60339 -11.37737 -11.34272 -10.98232 -10.77311 -10.69808 -10.67104 -10.24317 -10.17614 -10.05542 -9.90068 -9.76171 -9.00952 -8.53143 -8.35439 -7.47951 -6.15386 -3.91542 1.90085 3.34966 3.47183 3.62606 3.92082 4.02655 4.37749 4.48528 4.58141 4.68933 4.85971 4.94412 5.01030 5.24419 5.24891 5.31106 5.32138 5.38318 5.41869 5.52449 5.60451 5.62576 5.71999 5.75736 5.81342 5.84709 5.86619 5.96308 6.02981 6.04774 6.12023 6.14953 6.17629 6.19750 6.22572 6.30604 6.32073 6.48314 6.57336 6.60684 6.75940 6.80215 7.52566 7.91893 8.09372 8.86744 9.03113 9.50025 9.93352 10.91702 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.005852 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.765778 B = 4783.897682 C = 5972.089851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.104 3.896 4 N -0.469 5.469 5 C -0.348 4.348 6 H 0.090 0.910 7 C 0.094 3.906 8 N -0.869 5.869 9 Si 0.902 3.098 10 H -0.256 1.256 11 H -0.306 1.306 12 H -0.280 1.280 13 C 0.455 3.545 14 O -0.546 6.546 15 C -0.126 4.126 16 C -0.074 4.074 17 H 0.103 0.897 18 C -0.111 4.111 19 C -0.163 4.163 20 H 0.111 0.889 21 C 0.364 3.636 22 C -0.206 4.206 23 O -0.453 6.453 24 C -0.068 4.068 25 C -0.118 4.118 26 C -0.135 4.135 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.270 0.730 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 0.264 16.213 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C -0.020 4.020 4 N -0.191 5.191 5 C -0.474 4.474 6 H 0.108 0.892 7 C -0.114 4.114 8 N -0.504 5.504 9 Si 0.731 3.269 10 H -0.181 1.181 11 H -0.235 1.235 12 H -0.205 1.205 13 C 0.244 3.756 14 O -0.427 6.427 15 C -0.167 4.167 16 C -0.093 4.093 17 H 0.121 0.879 18 C -0.149 4.149 19 C -0.182 4.182 20 H 0.129 0.871 21 C 0.240 3.760 22 C -0.264 4.264 23 O -0.326 6.326 24 C -0.068 4.068 25 C -0.175 4.175 26 C -0.192 4.192 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.752 0.444 16.097 17.872 hybrid contribution 0.253 0.763 0.412 0.903 sum -7.498 1.207 16.509 18.172 Atomic orbital electron populations 1.21720 0.96217 1.01089 1.01521 1.21915 0.94777 0.98471 1.02506 1.21645 0.83340 0.95510 1.01519 1.43687 1.03977 1.66352 1.05134 1.18736 1.09729 1.22580 0.96321 0.89235 1.25279 0.94198 0.97379 0.94577 1.69766 1.07689 1.36507 1.36439 0.86492 0.78503 0.80342 0.81540 1.18139 1.23529 1.20534 1.20440 0.89037 0.81413 0.84707 1.90526 1.14418 1.51914 1.85879 1.21657 0.98600 1.02838 0.93557 1.22334 0.97725 0.97538 0.91710 0.87903 1.22834 1.02732 0.98139 0.91156 1.23331 1.00728 0.97347 0.96830 0.87070 1.24467 0.88557 0.82097 0.80840 1.22371 1.01986 1.01822 1.00173 1.90403 1.18263 1.61773 1.62186 1.21890 0.94918 0.94161 0.95840 1.21726 0.93340 1.01185 1.01199 1.21746 1.01609 0.96083 0.99792 0.93147 0.93008 0.92824 0.91484 0.92367 0.92628 0.90869 0.92001 0.90323 0.89863 0.90271 0.90225 0.89015 0.90407 0.89238 0.93229 0.92652 0.91166 0.92511 0.92995 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.15 0.37 -1.45 16 2 C -0.14 -2.19 6.24 -26.74 -0.17 -2.36 16 3 C 0.10 1.93 5.17 -4.04 -0.02 1.91 16 4 N -0.47 -11.23 2.10 -114.81 -0.24 -11.47 16 5 C -0.35 -9.88 9.63 -14.93 -0.14 -10.03 16 6 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 7 C 0.09 2.80 4.83 -17.47 -0.08 2.71 16 8 N -0.87 -26.89 13.96 55.50 0.77 -26.12 16 9 Si 0.90 24.11 25.01 -169.99 -4.25 19.86 16 10 H -0.26 -7.03 6.49 56.52 0.37 -6.67 16 11 H -0.31 -8.07 7.11 56.52 0.40 -7.67 16 12 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 13 C 0.45 10.61 5.90 -10.99 -0.06 10.55 16 14 O -0.55 -14.80 11.84 5.55 0.07 -14.73 16 15 C -0.13 -2.21 2.85 -27.88 -0.08 -2.29 16 16 C -0.07 -1.18 2.60 -89.81 -0.23 -1.41 16 17 H 0.10 1.77 7.74 -51.93 -0.40 1.37 16 18 C -0.11 -1.70 6.83 -25.92 -0.18 -1.88 16 19 C -0.16 -1.97 3.58 -90.95 -0.33 -2.29 16 20 H 0.11 1.12 7.97 -51.93 -0.41 0.71 16 21 C 0.36 4.26 6.66 -29.03 -0.19 4.06 16 22 C -0.21 -1.71 10.26 36.00 0.37 -1.34 16 23 O -0.45 -6.51 13.19 6.00 0.08 -6.43 16 24 C -0.07 -0.87 1.23 -153.69 -0.19 -1.06 16 25 C -0.12 -1.55 6.18 37.15 0.23 -1.32 16 26 C -0.14 -1.49 9.20 37.16 0.34 -1.15 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.92 7.21 -51.93 -0.37 0.55 16 32 H 0.06 0.91 6.47 -51.93 -0.34 0.57 16 33 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 34 H 0.27 7.88 8.31 -40.82 -0.34 7.54 16 35 H 0.08 1.32 6.48 -51.93 -0.34 0.98 16 36 H 0.08 1.30 7.00 -51.93 -0.36 0.94 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.27 7.40 -51.93 -0.38 0.89 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.64 8.12 -51.93 -0.42 0.21 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.61 7.30 -51.93 -0.38 0.23 16 43 H 0.05 0.72 7.44 -51.93 -0.39 0.33 16 44 H 0.07 1.02 5.67 -51.93 -0.29 0.73 16 45 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 362.29 15.07 5.46 5.46 Total: -1.00 -33.81 362.29 -6.80 -40.62 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.32 Total: 0.15 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -0.37 Total: -7.34 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.53 Total: -37.59 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: 0.14 Total: -21.16 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -4.25 Total: 19.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.81 -6.80 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332071538.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.357 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds