Wall clock time and date at job start Tue Mar 31 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47670 * 2 1 4 4 N 1.46494 * 109.47391 * 175.00617 * 3 2 1 5 5 C 1.37096 * 120.00026 * 90.73257 * 4 3 2 6 6 H 1.08004 * 119.99879 * 314.97117 * 5 4 3 7 7 C 1.38953 * 119.99961 * 134.69701 * 5 4 3 8 8 N 1.31414 * 119.99883 * 160.50879 * 7 5 4 9 9 Si 1.86798 * 120.00274 * 340.50798 * 7 5 4 10 10 H 1.48495 * 109.47027 * 95.24523 * 9 7 5 11 11 H 1.48497 * 109.46953 * 215.24621 * 9 7 5 12 12 H 1.48500 * 109.46716 * 335.24502 * 9 7 5 13 13 C 1.34775 * 120.00123 * 270.72545 * 4 3 2 14 14 O 1.21292 * 120.00654 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00069 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.47377 * 179.97438 * 15 13 4 17 17 H 1.08991 * 112.85160 * 313.31009 * 16 15 13 18 18 C 1.53782 * 113.61104 * 84.50757 * 16 15 13 19 19 C 1.53780 * 87.08319 * 139.98346 * 18 16 15 20 20 H 1.08995 * 113.61612 * 89.19541 * 19 18 16 21 21 C 1.50702 * 113.61367 * 220.02131 * 19 18 16 22 22 C 1.50698 * 119.99555 * 255.49214 * 21 19 18 23 23 O 1.20756 * 120.00367 * 75.48884 * 21 19 18 24 24 C 1.53781 * 113.61260 * 181.99978 * 16 15 13 25 25 C 1.52994 * 113.61879 * 334.56809 * 24 16 15 26 26 C 1.53002 * 113.61110 * 105.47579 * 24 16 15 27 27 H 1.09000 * 109.47356 * 184.73793 * 1 2 3 28 28 H 1.08998 * 109.46990 * 304.74328 * 1 2 3 29 29 H 1.09002 * 109.47205 * 64.74459 * 1 2 3 30 30 H 1.09007 * 109.47462 * 239.99498 * 2 1 3 31 31 H 1.09006 * 109.47298 * 120.00226 * 2 1 3 32 32 H 1.09001 * 109.46706 * 55.00575 * 3 2 1 33 33 H 1.08996 * 109.46775 * 295.00808 * 3 2 1 34 34 H 0.96998 * 120.00297 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47141 * 299.99859 * 15 13 4 36 36 H 1.09003 * 109.47096 * 59.99347 * 15 13 4 37 37 H 1.09003 * 113.61383 * 254.52811 * 18 16 15 38 38 H 1.08998 * 113.61956 * 25.34716 * 18 16 15 39 39 H 1.09002 * 109.47302 * 59.99931 * 22 21 19 40 40 H 1.09000 * 109.47303 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.47126 * 299.99862 * 22 21 19 42 42 H 1.09000 * 109.47042 * 59.99969 * 25 24 16 43 43 H 1.09000 * 109.47442 * 180.02562 * 25 24 16 44 44 H 1.09002 * 109.47409 * 300.00001 * 25 24 16 45 45 H 1.09004 * 109.47446 * 59.99891 * 26 24 16 46 46 H 1.09002 * 109.46952 * 179.97438 * 26 24 16 47 47 H 1.08998 * 109.47207 * 299.99559 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4441 0.1202 5 6 4.2807 1.4256 -1.0066 6 1 4.0446 0.7507 -1.8161 7 6 5.3722 2.2793 -1.1097 8 7 6.3290 2.0211 -1.9728 9 14 5.4796 3.7938 -0.0217 10 1 6.2929 3.4825 1.1812 11 1 6.1173 4.9018 -0.7772 12 1 4.1140 4.2011 0.3959 13 6 4.0759 1.4640 1.3386 14 8 5.2847 1.4649 1.4383 15 6 3.2178 1.4839 2.5773 16 6 4.1132 1.5036 3.8178 17 1 4.9195 0.7717 3.7695 18 6 4.5833 2.9126 4.2159 19 6 4.3564 2.4902 5.6770 20 1 5.2294 2.0289 6.1387 21 6 3.7458 3.5719 6.5303 22 6 4.6008 4.3277 7.5145 23 8 2.5715 3.8330 6.4253 24 6 3.3319 1.4757 5.1420 25 6 1.9137 2.0385 5.0289 26 6 3.3805 0.1222 5.8538 27 1 -0.3634 -1.0241 0.0849 28 1 -0.3633 0.5857 0.8444 29 1 -0.3634 0.4385 -0.9294 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6055 1.9814 0.8419 33 1 1.7516 1.9298 -0.9313 34 1 7.0908 2.6171 -2.0451 35 1 2.5884 2.3738 2.5691 36 1 2.5886 0.5941 2.5978 37 1 5.6283 3.1085 3.9753 38 1 3.9159 3.7066 3.8808 39 1 5.4055 4.8349 6.9823 40 1 3.9894 5.0638 8.0366 41 1 5.0257 3.6308 8.2369 42 1 1.3472 1.4532 4.3046 43 1 1.4237 1.9869 6.0012 44 1 1.9600 3.0768 4.7004 45 1 4.4159 -0.1316 6.0816 46 1 2.8083 0.1780 6.7799 47 1 2.9524 -0.6439 5.2074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332071538.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:21 Heat of formation + Delta-G solvation = -73.946919 kcal Electronic energy + Delta-G solvation = -25707.894389 eV Core-core repulsion = 22276.908893 eV Total energy + Delta-G solvation = -3430.985497 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.13338 -40.60344 -38.84842 -36.94929 -34.77045 -33.20434 -32.22674 -31.98587 -30.40475 -28.24225 -27.67025 -26.53086 -24.92313 -23.45030 -22.50805 -21.39662 -20.23383 -19.20658 -18.83591 -17.61350 -17.28610 -16.99278 -16.27500 -16.10544 -15.97790 -15.73278 -15.41164 -15.21021 -14.78688 -14.63681 -14.19133 -14.15845 -13.89044 -13.64805 -13.56950 -13.24525 -13.17409 -13.16265 -12.97224 -12.81074 -12.70304 -12.57819 -12.36629 -12.20605 -12.14379 -11.99746 -11.86880 -11.76600 -11.47661 -11.30755 -10.89876 -10.77072 -10.27473 -9.96395 -9.47548 -8.42901 -6.17955 1.00470 1.20547 1.32342 1.44065 2.02376 2.40786 2.72087 3.09545 3.18324 3.38791 3.53537 3.75282 3.84646 4.03581 4.10312 4.26738 4.27950 4.34097 4.40080 4.51268 4.54245 4.57389 4.60208 4.67384 4.69646 4.77740 4.81619 4.85205 4.87469 4.93461 4.96130 5.06625 5.08673 5.19206 5.21173 5.24964 5.26607 5.32428 5.36650 5.50190 5.53103 5.66424 5.74246 5.89572 6.64891 6.80934 6.97308 7.38403 7.96254 8.67899 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.005852 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.765778 B = 4783.897682 C = 5972.089851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.099 3.901 4 N -0.485 5.485 5 C -0.343 4.343 6 H 0.061 0.939 7 C 0.045 3.955 8 N -0.914 5.914 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.302 1.302 12 H -0.263 1.263 13 C 0.449 3.551 14 O -0.588 6.588 15 C -0.114 4.114 16 C -0.083 4.083 17 H 0.086 0.914 18 C -0.120 4.120 19 C -0.152 4.152 20 H 0.134 0.866 21 C 0.365 3.635 22 C -0.202 4.202 23 O -0.482 6.482 24 C -0.058 4.058 25 C -0.114 4.114 26 C -0.133 4.133 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.271 0.729 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 0.436 19.214 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C -0.024 4.024 4 N -0.207 5.207 5 C -0.471 4.471 6 H 0.078 0.922 7 C -0.159 4.159 8 N -0.552 5.552 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.231 1.231 12 H -0.188 1.188 13 C 0.240 3.760 14 O -0.473 6.473 15 C -0.154 4.154 16 C -0.102 4.102 17 H 0.105 0.895 18 C -0.158 4.158 19 C -0.171 4.171 20 H 0.152 0.848 21 C 0.243 3.757 22 C -0.258 4.258 23 O -0.357 6.357 24 C -0.058 4.058 25 C -0.171 4.171 26 C -0.190 4.190 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.786 0.616 19.100 21.470 hybrid contribution 0.852 0.612 -0.543 1.181 sum -8.933 1.228 18.558 20.632 Atomic orbital electron populations 1.21663 0.92837 1.02602 1.02604 1.21827 0.97575 0.96170 1.01391 1.21901 0.80006 0.97776 1.02691 1.43934 1.06012 1.66616 1.04173 1.18656 1.10157 1.21271 0.96971 0.92168 1.25941 0.94257 0.99829 0.95831 1.69855 1.08700 1.37885 1.38720 0.85654 0.78936 0.77850 0.79418 1.19739 1.23084 1.18781 1.21475 0.89186 0.79303 0.85995 1.90498 1.16734 1.53339 1.86685 1.21651 0.98196 1.04552 0.90956 1.22358 0.97789 0.97486 0.92552 0.89548 1.22798 1.01347 0.97612 0.94010 1.23334 1.01320 0.97310 0.95153 0.84820 1.24799 0.88387 0.81648 0.80869 1.22368 1.01625 1.02047 0.99786 1.90402 1.19632 1.62517 1.63198 1.21817 0.94625 0.95546 0.93787 1.21675 0.93499 1.00313 1.01577 1.21739 1.02449 0.94688 1.00141 0.91595 0.91132 0.92432 0.93969 0.92214 0.89520 0.91283 0.91953 0.88894 0.87382 0.92067 0.91161 0.87977 0.90242 0.86695 0.92366 0.92333 0.92764 0.91793 0.91601 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.91 71.98 0.71 -2.26 16 2 C -0.13 -3.95 6.24 30.59 0.19 -3.76 16 3 C 0.10 3.52 5.17 86.38 0.45 3.97 16 4 N -0.48 -23.15 2.10 -635.55 -1.34 -24.48 16 5 C -0.34 -20.07 9.63 84.04 0.81 -19.27 16 6 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 7 C 0.05 2.76 4.83 84.93 0.41 3.17 16 8 N -0.91 -58.71 13.96 21.66 0.30 -58.41 16 9 Si 0.95 50.83 25.01 68.60 1.72 52.54 16 10 H -0.27 -15.03 6.49 99.48 0.65 -14.39 16 11 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 12 H -0.26 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.45 20.77 5.90 87.66 0.52 21.28 16 14 O -0.59 -32.36 11.84 -3.07 -0.04 -32.40 16 15 C -0.11 -3.76 2.85 29.85 0.09 -3.67 16 16 C -0.08 -2.51 2.60 -10.27 -0.03 -2.53 16 17 H 0.09 2.92 7.74 -2.39 -0.02 2.90 16 18 C -0.12 -3.55 6.83 31.12 0.21 -3.34 16 19 C -0.15 -3.29 3.58 -11.01 -0.04 -3.33 16 20 H 0.13 2.28 7.97 -2.39 -0.02 2.26 16 21 C 0.36 7.57 6.66 29.10 0.19 7.77 16 22 C -0.20 -2.68 10.26 71.24 0.73 -1.95 16 23 O -0.48 -12.82 13.19 -1.44 -0.02 -12.83 16 24 C -0.06 -1.32 1.23 -51.65 -0.06 -1.38 16 25 C -0.11 -2.66 6.18 71.98 0.45 -2.21 16 26 C -0.13 -2.48 9.20 71.98 0.66 -1.82 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.06 1.77 7.21 -2.38 -0.02 1.75 16 32 H 0.09 2.55 6.47 -2.39 -0.02 2.54 16 33 H 0.07 2.50 8.03 -2.39 -0.02 2.48 16 34 H 0.27 16.44 8.31 -92.71 -0.77 15.67 16 35 H 0.09 2.84 6.48 -2.38 -0.02 2.83 16 36 H 0.11 3.03 7.00 -2.39 -0.02 3.02 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 2.18 7.40 -2.39 -0.02 2.17 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 41 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.23 7.30 -2.39 -0.02 1.21 16 43 H 0.06 1.34 7.44 -2.39 -0.02 1.33 16 44 H 0.05 1.46 5.67 -2.39 -0.01 1.44 16 45 H 0.06 1.11 7.95 -2.39 -0.02 1.09 16 46 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -76.56 362.29 6.78 -69.78 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.86 Total: 15.14 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 5.29 Total: -9.34 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -1.03 Total: -82.89 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.06 Total: -45.23 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 1.72 Total: 52.54 kcal Total: -76.56 6.78 -69.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332071538.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.162 kcal (2) G-P(sol) polarization free energy of solvation -76.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds