Wall clock time and date at job start Tue Mar 31 2020 06:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.43677 * 2 1 4 4 C 1.54897 * 110.48191 * 122.53759 * 2 1 3 5 5 C 1.54896 * 102.74283 * 156.75513 * 4 2 1 6 6 C 1.54256 * 104.19713 * 322.05307 * 5 4 2 7 7 C 1.53002 * 110.03091 * 142.94555 * 6 5 4 8 8 C 1.50698 * 110.03512 * 264.32796 * 6 5 4 9 9 O 1.21284 * 119.99830 * 12.33114 * 8 6 5 10 10 N 1.34783 * 120.00213 * 192.33053 * 8 6 5 11 11 C 1.47574 * 134.49089 * 174.78171 * 10 8 6 12 12 C 1.53946 * 86.11428 * 155.36350 * 11 10 8 13 13 O 1.42903 * 113.74379 * 269.15204 * 12 11 10 14 14 C 1.50706 * 113.74114 * 137.95548 * 12 11 10 15 15 H 1.08001 * 119.99891 * 359.97438 * 14 12 11 16 16 C 1.37880 * 119.99600 * 180.02562 * 14 12 11 17 17 N 1.31508 * 120.00443 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99638 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47197 * 59.99784 * 18 16 14 20 20 H 1.48497 * 109.47339 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47222 * 299.99971 * 18 16 14 22 22 C 1.47572 * 134.49225 * 354.78844 * 10 8 6 23 23 C 1.53878 * 106.59920 * 23.61240 * 6 5 4 24 24 C 1.53006 * 110.03149 * 119.28268 * 23 6 5 25 25 C 1.52995 * 110.03423 * 240.71144 * 23 6 5 26 26 H 1.08996 * 109.47452 * 298.91494 * 1 2 3 27 27 H 1.08994 * 109.47065 * 58.92056 * 1 2 3 28 28 H 1.09003 * 109.47167 * 178.91808 * 1 2 3 29 29 H 1.08997 * 110.75904 * 38.44294 * 4 2 1 30 30 H 1.09001 * 110.91470 * 275.13824 * 4 2 1 31 31 H 1.09007 * 110.48023 * 203.37553 * 5 4 2 32 32 H 1.08995 * 110.59908 * 80.79624 * 5 4 2 33 33 H 1.09000 * 109.47071 * 188.82669 * 7 6 5 34 34 H 1.09003 * 109.47232 * 308.83181 * 7 6 5 35 35 H 1.09001 * 109.47096 * 68.83185 * 7 6 5 36 36 H 1.08999 * 113.77237 * 41.06228 * 11 10 8 37 37 H 1.08997 * 113.77218 * 269.66280 * 11 10 8 38 38 H 0.96699 * 113.99951 * 178.07132 * 13 12 11 39 39 H 0.96998 * 120.00136 * 180.02562 * 17 16 14 40 40 H 1.09009 * 113.77066 * 90.33535 * 22 10 8 41 41 H 1.09005 * 113.77360 * 318.93921 * 22 10 8 42 42 H 1.08998 * 109.47025 * 60.00039 * 24 23 6 43 43 H 1.08997 * 109.47392 * 180.02562 * 24 23 6 44 44 H 1.09000 * 109.46970 * 300.00188 * 24 23 6 45 45 H 1.09006 * 109.47194 * 61.82855 * 25 23 6 46 46 H 1.08999 * 109.47250 * 181.82981 * 25 23 6 47 47 H 1.08998 * 109.47441 * 301.83150 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0720 -0.7804 1.2233 5 6 3.4920 -1.1940 0.7629 6 6 3.3202 -1.5377 -0.7310 7 6 4.5508 -1.0829 -1.5183 8 6 3.1194 -3.0217 -0.8997 9 8 2.8886 -3.7161 0.0675 10 7 3.1963 -3.5772 -2.1253 11 6 3.1534 -4.9602 -2.6384 12 6 2.6718 -4.3422 -3.9636 13 8 1.2503 -4.2387 -4.0671 14 6 3.3066 -4.9554 -5.1852 15 1 4.0273 -5.7524 -5.0767 16 6 2.9680 -4.4982 -6.4411 17 7 2.0908 -3.5274 -6.5731 18 14 3.7553 -5.2578 -7.9552 19 1 3.4380 -6.7077 -8.0036 20 1 3.2259 -4.5948 -9.1739 21 1 5.2277 -5.0752 -7.8918 22 6 3.3574 -3.0468 -3.4929 23 6 2.0727 -0.7785 -1.2161 24 6 2.4531 0.1945 -2.3340 25 6 1.0192 -1.7680 -1.7178 26 1 -0.3634 0.4969 0.8995 27 1 -0.3633 0.5305 -0.8801 28 1 -0.3634 -1.0275 -0.0194 29 1 1.4594 -1.6596 1.4230 30 1 2.1227 -0.1387 2.1029 31 1 3.8338 -2.0674 1.3185 32 1 4.1911 -0.3670 0.8863 33 1 4.3574 -1.1854 -2.5860 34 1 4.7655 -0.0397 -1.2863 35 1 5.4064 -1.6997 -1.2432 36 1 2.4079 -5.5873 -2.1495 37 1 4.1324 -5.4346 -2.7052 38 1 0.9447 -3.8240 -4.8855 39 1 1.8523 -3.2060 -7.4567 40 1 4.3964 -2.9591 -3.8107 41 1 2.7747 -2.1460 -3.6864 42 1 2.8818 -0.3604 -3.1685 43 1 1.5636 0.7272 -2.6703 44 1 3.1849 0.9102 -1.9594 45 1 0.7132 -2.4192 -0.8989 46 1 0.1533 -1.2197 -2.0890 47 1 1.4403 -2.3702 -2.5229 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334504077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:38 Heat of formation + Delta-G solvation = -58.549693 kcal Electronic energy + Delta-G solvation = -26865.518952 eV Core-core repulsion = 23435.201129 eV Total energy + Delta-G solvation = -3430.317823 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95691 -38.57651 -36.87049 -34.01464 -32.82612 -32.19436 -32.03519 -28.76770 -27.94084 -27.02093 -25.42159 -25.19615 -23.62455 -23.46750 -21.18237 -19.59135 -18.59803 -17.64553 -16.93837 -16.37623 -15.69544 -15.21297 -15.11500 -14.76657 -14.09707 -13.98887 -13.77192 -13.32785 -13.17886 -12.91334 -12.73937 -12.64740 -12.51383 -12.26632 -11.84471 -11.76764 -11.61484 -11.43098 -11.23322 -11.08896 -11.02138 -10.90365 -10.78581 -10.59560 -10.49899 -10.42499 -10.27910 -10.21055 -10.07657 -9.85230 -9.50281 -8.99153 -8.74606 -8.34642 -7.73750 -6.39260 -4.49125 3.15606 3.21711 3.23932 3.30773 3.64058 4.18502 4.58726 4.70018 4.79406 4.87039 5.16126 5.33387 5.35620 5.51538 5.53373 5.57581 5.62046 5.64472 5.67032 5.84434 5.87386 5.91136 5.96486 6.02867 6.09513 6.10292 6.14697 6.22175 6.23761 6.29892 6.36235 6.38350 6.41203 6.45898 6.51488 6.58637 6.59749 6.66073 6.73476 6.78654 7.00444 7.14562 7.63304 7.83232 8.53193 8.57988 8.88141 9.21983 9.46447 10.67020 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.005136 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.475922 B = 5450.294877 C = 5716.378117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.117 4.117 5 C -0.104 4.104 6 C -0.072 4.072 7 C -0.145 4.145 8 C 0.549 3.451 9 O -0.565 6.565 10 N -0.630 5.630 11 C 0.108 3.892 12 C 0.240 3.760 13 O -0.570 6.570 14 C -0.537 4.537 15 H 0.069 0.931 16 C 0.074 3.926 17 N -0.898 5.898 18 Si 0.906 3.094 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.074 3.926 23 C -0.045 4.045 24 C -0.143 4.143 25 C -0.165 4.165 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.392 0.608 39 H 0.273 0.727 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 8.847 7.299 11.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.089 0.911 4 C -0.154 4.154 5 C -0.142 4.142 6 C -0.075 4.075 7 C -0.203 4.203 8 C 0.339 3.661 9 O -0.446 6.446 10 N -0.363 5.363 11 C -0.014 4.014 12 C 0.198 3.802 13 O -0.383 6.383 14 C -0.575 4.575 15 H 0.088 0.912 16 C -0.129 4.129 17 N -0.538 5.538 18 Si 0.733 3.267 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.049 4.049 23 C -0.045 4.045 24 C -0.200 4.200 25 C -0.222 4.222 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.247 0.753 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.109 8.397 8.417 11.941 hybrid contribution 0.481 0.023 -1.402 1.482 sum 1.590 8.420 7.015 11.074 Atomic orbital electron populations 1.21880 0.95199 1.02284 1.00804 1.22038 0.95513 0.98518 0.94399 0.91054 1.22514 0.96361 0.99729 0.96794 1.22308 0.97255 1.01212 0.93405 1.21418 0.96682 0.92262 0.97100 1.22131 0.96030 1.00857 1.01236 1.19875 0.75774 0.89179 0.81271 1.90597 1.51131 1.64118 1.38726 1.50137 1.70295 1.10433 1.05449 1.23427 1.00079 0.84713 0.93143 1.19830 0.80466 0.89165 0.90729 1.86065 1.20743 1.84402 1.47042 1.21485 1.25065 1.20497 0.90440 0.91245 1.25034 0.94398 0.94004 0.99431 1.69300 1.32728 1.26985 1.24836 0.86422 0.79567 0.79600 0.81119 1.19904 1.21026 1.19955 1.24433 1.00915 1.01931 0.77590 1.21071 0.93590 0.94897 0.94953 1.22099 1.01045 0.98603 0.98264 1.22441 0.98266 0.98763 1.02732 0.93341 0.92814 0.91939 0.91081 0.92030 0.90488 0.91564 0.90764 0.91918 0.92944 0.91321 0.89968 0.75289 0.91631 0.90452 0.90624 0.91579 0.92823 0.92639 0.92910 0.92833 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.05 37.16 0.30 -1.48 16 2 C -0.09 -1.12 2.90 -88.96 -0.26 -1.38 16 3 H 0.07 0.84 7.84 -51.93 -0.41 0.43 16 4 C -0.12 -1.58 6.33 -24.73 -0.16 -1.74 16 5 C -0.10 -1.51 5.62 -25.07 -0.14 -1.65 16 6 C -0.07 -1.14 0.73 -154.55 -0.11 -1.26 16 7 C -0.15 -2.07 6.79 37.16 0.25 -1.82 16 8 C 0.55 11.00 4.82 -10.98 -0.05 10.95 16 9 O -0.57 -12.97 16.29 5.55 0.09 -12.88 16 10 N -0.63 -12.90 2.63 -178.36 -0.47 -13.37 16 11 C 0.11 2.34 8.23 -2.98 -0.02 2.32 16 12 C 0.24 5.54 1.42 -90.85 -0.13 5.41 16 13 O -0.57 -14.06 12.49 -35.23 -0.44 -14.50 16 14 C -0.54 -13.14 8.62 -34.44 -0.30 -13.43 16 15 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.07 1.79 5.40 -17.82 -0.10 1.70 16 17 N -0.90 -22.05 11.09 55.43 0.61 -21.43 16 18 Si 0.91 19.15 29.54 -169.99 -5.02 14.12 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 22 C 0.07 1.51 4.87 -2.98 -0.01 1.50 16 23 C -0.04 -0.67 0.86 -153.39 -0.13 -0.80 16 24 C -0.14 -1.94 7.17 37.16 0.27 -1.67 16 25 C -0.17 -2.90 5.94 37.16 0.22 -2.68 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.63 7.89 -51.93 -0.41 0.22 16 28 H 0.06 0.85 6.32 -51.93 -0.33 0.53 16 29 H 0.07 1.10 8.06 -51.93 -0.42 0.69 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.25 7.05 -51.93 -0.37 0.88 16 32 H 0.07 0.81 7.74 -51.93 -0.40 0.41 16 33 H 0.07 1.11 3.97 -51.93 -0.21 0.90 16 34 H 0.06 0.75 6.94 -51.93 -0.36 0.39 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 38 H 0.39 9.82 6.46 45.56 0.29 10.12 16 39 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 40 H 0.08 1.55 7.90 -51.92 -0.41 1.14 16 41 H 0.08 1.54 4.72 -51.93 -0.25 1.29 16 42 H 0.07 0.98 4.69 -51.93 -0.24 0.73 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.65 6.89 -51.93 -0.36 0.29 16 45 H 0.05 1.02 6.85 -51.93 -0.36 0.66 16 46 H 0.05 0.87 7.04 -51.93 -0.37 0.50 16 47 H 0.10 1.91 2.79 -51.93 -0.14 1.76 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -26.47 339.18 -7.30 -33.77 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -6.81 Total: 15.22 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -0.38 Total: -6.03 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.14 Total: -34.80 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.35 Total: -27.39 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.47 -7.30 -33.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334504077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.781 kcal (2) G-P(sol) polarization free energy of solvation -26.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds