Wall clock time and date at job start Tue Mar 31 2020 06:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.43677 * 2 1 4 4 C 1.54897 * 110.48191 * 122.53759 * 2 1 3 5 5 C 1.54896 * 102.74283 * 156.75513 * 4 2 1 6 6 C 1.54256 * 104.19713 * 322.05307 * 5 4 2 7 7 C 1.53002 * 110.03091 * 142.94555 * 6 5 4 8 8 C 1.50698 * 110.03512 * 264.32796 * 6 5 4 9 9 O 1.21284 * 119.99830 * 12.33114 * 8 6 5 10 10 N 1.34783 * 120.00213 * 192.33053 * 8 6 5 11 11 C 1.47574 * 134.49089 * 174.78171 * 10 8 6 12 12 C 1.53946 * 86.11428 * 155.36350 * 11 10 8 13 13 O 1.42903 * 113.74379 * 269.15204 * 12 11 10 14 14 C 1.50706 * 113.74114 * 137.95548 * 12 11 10 15 15 H 1.08001 * 119.99891 * 359.97438 * 14 12 11 16 16 C 1.37880 * 119.99600 * 180.02562 * 14 12 11 17 17 N 1.31508 * 120.00443 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99638 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47197 * 59.99784 * 18 16 14 20 20 H 1.48497 * 109.47339 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47222 * 299.99971 * 18 16 14 22 22 C 1.47572 * 134.49225 * 354.78844 * 10 8 6 23 23 C 1.53878 * 106.59920 * 23.61240 * 6 5 4 24 24 C 1.53006 * 110.03149 * 119.28268 * 23 6 5 25 25 C 1.52995 * 110.03423 * 240.71144 * 23 6 5 26 26 H 1.08996 * 109.47452 * 298.91494 * 1 2 3 27 27 H 1.08994 * 109.47065 * 58.92056 * 1 2 3 28 28 H 1.09003 * 109.47167 * 178.91808 * 1 2 3 29 29 H 1.08997 * 110.75904 * 38.44294 * 4 2 1 30 30 H 1.09001 * 110.91470 * 275.13824 * 4 2 1 31 31 H 1.09007 * 110.48023 * 203.37553 * 5 4 2 32 32 H 1.08995 * 110.59908 * 80.79624 * 5 4 2 33 33 H 1.09000 * 109.47071 * 188.82669 * 7 6 5 34 34 H 1.09003 * 109.47232 * 308.83181 * 7 6 5 35 35 H 1.09001 * 109.47096 * 68.83185 * 7 6 5 36 36 H 1.08999 * 113.77237 * 41.06228 * 11 10 8 37 37 H 1.08997 * 113.77218 * 269.66280 * 11 10 8 38 38 H 0.96699 * 113.99951 * 178.07132 * 13 12 11 39 39 H 0.96998 * 120.00136 * 180.02562 * 17 16 14 40 40 H 1.09009 * 113.77066 * 90.33535 * 22 10 8 41 41 H 1.09005 * 113.77360 * 318.93921 * 22 10 8 42 42 H 1.08998 * 109.47025 * 60.00039 * 24 23 6 43 43 H 1.08997 * 109.47392 * 180.02562 * 24 23 6 44 44 H 1.09000 * 109.46970 * 300.00188 * 24 23 6 45 45 H 1.09006 * 109.47194 * 61.82855 * 25 23 6 46 46 H 1.08999 * 109.47250 * 181.82981 * 25 23 6 47 47 H 1.08998 * 109.47441 * 301.83150 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0720 -0.7804 1.2233 5 6 3.4920 -1.1940 0.7629 6 6 3.3202 -1.5377 -0.7310 7 6 4.5508 -1.0829 -1.5183 8 6 3.1194 -3.0217 -0.8997 9 8 2.8886 -3.7161 0.0675 10 7 3.1963 -3.5772 -2.1253 11 6 3.1534 -4.9602 -2.6384 12 6 2.6718 -4.3422 -3.9636 13 8 1.2503 -4.2387 -4.0671 14 6 3.3066 -4.9554 -5.1852 15 1 4.0273 -5.7524 -5.0767 16 6 2.9680 -4.4982 -6.4411 17 7 2.0908 -3.5274 -6.5731 18 14 3.7553 -5.2578 -7.9552 19 1 3.4380 -6.7077 -8.0036 20 1 3.2259 -4.5948 -9.1739 21 1 5.2277 -5.0752 -7.8918 22 6 3.3574 -3.0468 -3.4929 23 6 2.0727 -0.7785 -1.2161 24 6 2.4531 0.1945 -2.3340 25 6 1.0192 -1.7680 -1.7178 26 1 -0.3634 0.4969 0.8995 27 1 -0.3633 0.5305 -0.8801 28 1 -0.3634 -1.0275 -0.0194 29 1 1.4594 -1.6596 1.4230 30 1 2.1227 -0.1387 2.1029 31 1 3.8338 -2.0674 1.3185 32 1 4.1911 -0.3670 0.8863 33 1 4.3574 -1.1854 -2.5860 34 1 4.7655 -0.0397 -1.2863 35 1 5.4064 -1.6997 -1.2432 36 1 2.4079 -5.5873 -2.1495 37 1 4.1324 -5.4346 -2.7052 38 1 0.9447 -3.8240 -4.8855 39 1 1.8523 -3.2060 -7.4567 40 1 4.3964 -2.9591 -3.8107 41 1 2.7747 -2.1460 -3.6864 42 1 2.8818 -0.3604 -3.1685 43 1 1.5636 0.7272 -2.6703 44 1 3.1849 0.9102 -1.9594 45 1 0.7132 -2.4192 -0.8989 46 1 0.1533 -1.2197 -2.0890 47 1 1.4403 -2.3702 -2.5229 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334504077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:37 Heat of formation + Delta-G solvation = -73.988835 kcal Electronic energy + Delta-G solvation = -26866.188443 eV Core-core repulsion = 23435.201129 eV Total energy + Delta-G solvation = -3430.987314 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.35364 -40.14098 -38.50080 -35.83444 -34.11984 -33.98720 -33.22438 -30.40110 -29.07905 -28.38529 -27.12794 -26.90401 -24.89645 -24.54419 -22.61673 -21.13952 -20.04081 -19.37302 -18.51770 -17.78679 -17.27789 -16.93881 -16.39924 -16.29270 -15.82701 -15.49001 -14.98733 -14.67453 -14.37052 -14.24641 -14.17612 -14.14446 -14.00640 -13.64324 -13.39035 -13.27593 -13.15797 -12.84009 -12.75183 -12.44627 -12.38664 -12.23358 -12.22187 -12.08706 -11.99540 -11.69704 -11.57760 -11.38172 -11.29458 -11.23039 -11.04305 -10.69706 -10.52730 -10.12963 -9.46106 -8.24192 -6.40724 1.47840 1.50549 1.57046 1.73071 2.03250 2.41919 2.98140 3.36901 3.49165 3.56573 3.79881 4.00019 4.19333 4.21430 4.24594 4.35548 4.37613 4.41905 4.50743 4.52317 4.62029 4.66392 4.74911 4.76158 4.82925 4.85203 4.87009 4.90957 4.94958 5.01197 5.01966 5.09849 5.18920 5.21158 5.24216 5.26554 5.29490 5.30641 5.40686 5.51021 5.61362 5.64829 5.75281 5.96388 6.63304 6.94704 7.24794 7.33326 7.51192 8.81030 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.005136 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.475922 B = 5450.294877 C = 5716.378117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.101 0.899 4 C -0.115 4.115 5 C -0.102 4.102 6 C -0.071 4.071 7 C -0.143 4.143 8 C 0.541 3.459 9 O -0.602 6.602 10 N -0.629 5.629 11 C 0.104 3.896 12 C 0.223 3.777 13 O -0.582 6.582 14 C -0.558 4.558 15 H 0.068 0.932 16 C 0.038 3.962 17 N -0.913 5.913 18 Si 0.964 3.036 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.268 1.268 22 C 0.096 3.904 23 C -0.043 4.043 24 C -0.140 4.140 25 C -0.158 4.158 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.387 0.613 39 H 0.276 0.724 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.023 0.977 46 H 0.061 0.939 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.459 11.510 7.239 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.119 0.881 4 C -0.153 4.153 5 C -0.140 4.140 6 C -0.074 4.074 7 C -0.200 4.200 8 C 0.333 3.667 9 O -0.485 6.485 10 N -0.361 5.361 11 C -0.019 4.019 12 C 0.182 3.818 13 O -0.394 6.394 14 C -0.596 4.596 15 H 0.086 0.914 16 C -0.163 4.163 17 N -0.553 5.553 18 Si 0.789 3.211 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.026 4.026 23 C -0.044 4.044 24 C -0.196 4.196 25 C -0.215 4.215 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.242 0.758 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.042 0.958 46 H 0.080 0.920 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.252 11.068 8.359 14.052 hybrid contribution 0.059 -0.890 -1.351 1.619 sum 2.312 10.179 7.008 12.572 Atomic orbital electron populations 1.21857 0.94959 1.01111 1.02152 1.22062 0.95737 0.99384 0.92599 0.88065 1.22502 0.95270 0.99144 0.98335 1.22353 0.98512 1.01403 0.91724 1.21536 0.98168 0.88874 0.98829 1.22145 0.94723 1.02791 1.00297 1.20788 0.74500 0.91106 0.80280 1.90571 1.52672 1.65538 1.39743 1.50137 1.70354 1.09710 1.05927 1.23435 1.00265 0.85477 0.92713 1.20059 0.79763 0.90983 0.90987 1.86059 1.22085 1.84547 1.46738 1.21695 1.25562 1.20985 0.91358 0.91415 1.25656 0.94780 0.94313 1.01556 1.69361 1.33102 1.27432 1.25409 0.85515 0.78993 0.78398 0.78150 1.20350 1.20687 1.19302 1.24156 1.00796 1.00643 0.77034 1.21106 0.92131 0.94592 0.96540 1.22077 1.02106 0.98422 0.97033 1.22339 0.99502 0.98891 1.00757 0.91413 0.92078 0.94383 0.94238 0.89196 0.92936 0.88148 0.91630 0.88493 0.93373 0.93071 0.88534 0.75827 0.91417 0.89757 0.90364 0.93180 0.92003 0.89841 0.95814 0.91998 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.05 71.98 0.58 -2.68 16 2 C -0.08 -1.83 2.90 -9.72 -0.03 -1.86 16 3 H 0.10 1.82 7.84 -2.39 -0.02 1.80 16 4 C -0.12 -2.89 6.33 31.89 0.20 -2.69 16 5 C -0.10 -2.75 5.62 31.67 0.18 -2.57 16 6 C -0.07 -2.17 0.73 -52.21 -0.04 -2.21 16 7 C -0.14 -3.68 6.79 71.98 0.49 -3.20 16 8 C 0.54 22.08 4.82 87.66 0.42 22.50 16 9 O -0.60 -28.76 16.29 -3.04 -0.05 -28.81 16 10 N -0.63 -26.32 2.63 -840.44 -2.21 -28.54 16 11 C 0.10 4.65 8.23 86.48 0.71 5.36 16 12 C 0.22 10.56 1.42 -10.88 -0.02 10.55 16 13 O -0.58 -29.75 12.49 -148.98 -1.86 -31.61 16 14 C -0.56 -27.54 8.62 25.60 0.22 -27.32 16 15 H 0.07 3.28 7.81 -2.91 -0.02 3.26 16 16 C 0.04 1.83 5.40 84.66 0.46 2.29 16 17 N -0.91 -44.76 11.09 21.45 0.24 -44.52 16 18 Si 0.96 38.85 29.54 68.60 2.03 40.88 16 19 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 22 C 0.10 3.95 4.87 86.48 0.42 4.37 16 23 C -0.04 -1.21 0.86 -51.46 -0.04 -1.25 16 24 C -0.14 -3.33 7.17 71.98 0.52 -2.82 16 25 C -0.16 -5.62 5.94 71.98 0.43 -5.20 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.29 7.89 -2.39 -0.02 1.27 16 28 H 0.04 1.04 6.32 -2.39 -0.02 1.02 16 29 H 0.04 1.23 8.06 -2.39 -0.02 1.21 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.68 7.05 -2.38 -0.02 1.66 16 32 H 0.10 2.02 7.74 -2.39 -0.02 2.00 16 33 H 0.06 1.82 3.97 -2.39 -0.01 1.81 16 34 H 0.10 1.85 6.94 -2.39 -0.02 1.83 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.10 3.97 8.09 -2.39 -0.02 3.95 16 38 H 0.39 20.03 6.46 -74.06 -0.48 19.55 16 39 H 0.28 12.88 8.31 -92.71 -0.77 12.11 16 40 H 0.08 3.34 7.90 -2.38 -0.02 3.32 16 41 H 0.08 3.19 4.72 -2.38 -0.01 3.18 16 42 H 0.05 1.37 4.69 -2.39 -0.01 1.36 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.54 6.89 -2.39 -0.02 1.52 16 45 H 0.02 0.94 6.85 -2.38 -0.02 0.93 16 46 H 0.06 2.02 7.04 -2.39 -0.02 2.00 16 47 H 0.07 2.86 2.79 -2.39 -0.01 2.85 16 Total: -1.00 -58.67 339.18 3.14 -55.53 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: 0.50 Total: 43.80 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 4.50 Total: -6.73 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -1.97 Total: -73.06 kcal Atomic # 8 Polarization: -58.51 SS G_CDS: -1.91 Total: -60.42 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -58.67 3.14 -55.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334504077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.459 kcal (2) G-P(sol) polarization free energy of solvation -58.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds