Wall clock time and date at job start Tue Mar 31 2020 07:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.47941 * 2 1 4 4 C 1.53091 * 109.47715 * 239.98210 * 2 1 3 5 5 C 1.53182 * 109.16185 * 182.39581 * 4 2 1 6 6 H 1.09004 * 109.54270 * 176.84452 * 5 4 2 7 7 C 1.50692 * 109.54204 * 297.11383 * 5 4 2 8 8 O 1.21283 * 120.00428 * 11.64161 * 7 5 4 9 9 N 1.34774 * 119.99864 * 191.63669 * 7 5 4 10 10 C 1.46924 * 120.63212 * 5.32463 * 9 7 5 11 11 C 1.52755 * 109.01170 * 233.58297 * 10 9 7 12 12 C 1.53044 * 109.38175 * 305.58611 * 11 10 9 13 13 C 1.50705 * 109.46013 * 181.25952 * 12 11 10 14 14 H 1.07997 * 119.99941 * 272.37207 * 13 12 11 15 15 C 1.37871 * 120.00236 * 92.37202 * 13 12 11 16 16 N 1.31511 * 120.00517 * 174.41516 * 15 13 12 17 17 Si 1.86800 * 120.00061 * 354.41759 * 15 13 12 18 18 H 1.48496 * 109.47311 * 93.64430 * 17 15 13 19 19 H 1.48500 * 109.47452 * 213.65054 * 17 15 13 20 20 H 1.48506 * 109.46910 * 333.65029 * 17 15 13 21 21 C 1.53036 * 109.53675 * 61.23806 * 12 11 10 22 22 C 1.46923 * 120.63413 * 185.59997 * 9 7 5 23 23 C 1.53177 * 109.03453 * 56.97962 * 5 4 2 24 24 C 1.53094 * 109.16432 * 303.02305 * 23 5 4 25 25 H 1.09000 * 109.47300 * 297.61260 * 24 23 5 26 26 C 1.53001 * 109.47654 * 177.59186 * 24 23 5 27 27 O 1.42896 * 109.41507 * 57.60759 * 24 23 5 28 28 H 1.08998 * 109.46771 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46761 * 300.02102 * 1 2 3 30 30 H 1.08997 * 109.46876 * 60.02096 * 1 2 3 31 31 H 1.09004 * 109.52692 * 62.48806 * 4 2 1 32 32 H 1.09000 * 109.57476 * 302.33537 * 4 2 1 33 33 H 1.09008 * 109.58736 * 353.41744 * 10 9 7 34 34 H 1.09001 * 109.59301 * 113.83918 * 10 9 7 35 35 H 1.09000 * 109.56799 * 185.54814 * 11 10 9 36 36 H 1.09003 * 109.39119 * 65.51200 * 11 10 9 37 37 H 1.09001 * 109.45810 * 301.21695 * 12 11 10 38 38 H 0.96999 * 120.00706 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.49649 * 178.68025 * 21 12 11 40 40 H 1.09003 * 109.49984 * 58.58742 * 21 12 11 41 41 H 1.08999 * 109.59264 * 246.15764 * 22 9 7 42 42 H 1.09001 * 109.58762 * 6.58611 * 22 9 7 43 43 H 1.08999 * 109.52112 * 183.10875 * 23 5 4 44 44 H 1.09009 * 109.57057 * 62.95573 * 23 5 4 45 45 H 1.08993 * 109.47411 * 60.00260 * 26 24 23 46 46 H 1.08998 * 109.47388 * 299.99368 * 26 24 23 47 47 H 1.09001 * 109.46411 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7220 -1.2497 5 6 3.5712 -0.7704 -1.2125 6 1 3.9392 -1.3321 -2.0711 7 6 4.1209 0.6321 -1.2520 8 8 3.3798 1.5788 -1.0923 9 7 5.4363 0.8345 -1.4648 10 6 6.3265 -0.2923 -1.7752 11 6 7.4993 -0.2842 -0.7965 12 6 8.1819 1.0851 -0.8331 13 6 9.3581 1.0851 0.1091 14 1 9.2175 1.3431 1.1483 15 6 10.6136 0.7555 -0.3555 16 7 11.6572 0.8613 0.4378 17 14 10.8326 0.1589 -2.1121 18 1 11.1671 1.3105 -2.9880 19 1 11.9323 -0.8377 -2.1630 20 1 9.5722 -0.4704 -2.5818 21 6 7.1857 2.1651 -0.4050 22 6 6.0084 2.1854 -1.3849 23 6 4.0179 -1.4597 0.0804 24 6 3.4310 -0.7092 1.2787 25 1 3.8196 0.3091 1.2956 26 6 3.8233 -1.4266 2.5719 27 8 2.0069 -0.6743 1.1662 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 1.7146 -0.1841 -2.1400 32 1 1.6444 -1.7373 -1.2723 33 1 5.7777 -1.2291 -1.6780 34 1 6.7030 -0.1910 -2.7931 35 1 8.2158 -1.0556 -1.0789 36 1 7.1315 -0.4806 0.2107 37 1 8.5281 1.2913 -1.8458 38 1 12.5404 0.6291 0.1110 39 1 7.6791 3.1371 -0.4087 40 1 6.8203 1.9460 0.5983 41 1 6.3584 2.4930 -2.3702 42 1 5.2498 2.8831 -1.0301 43 1 5.1061 -1.4493 0.1414 44 1 3.6626 -2.4902 0.0864 45 1 4.9095 -1.4540 2.6571 46 1 3.4343 -2.4447 2.5550 47 1 3.4057 -0.8918 3.4250 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334966235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:02 Heat of formation + Delta-G solvation = -101.312848 kcal Electronic energy + Delta-G solvation = -26007.501072 eV Core-core repulsion = 22575.328900 eV Total energy + Delta-G solvation = -3432.172172 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87155 -38.68953 -36.99237 -34.10970 -33.58925 -33.28940 -31.52096 -30.59585 -29.63018 -26.70795 -26.42498 -24.14302 -22.74412 -22.37342 -21.76999 -21.05443 -19.64352 -18.23612 -17.04606 -16.73655 -16.47002 -15.91038 -15.46523 -15.25909 -14.48466 -14.31042 -14.05958 -13.79564 -13.56216 -13.15171 -13.05443 -12.80108 -12.68883 -12.56971 -12.42170 -12.09386 -12.02678 -11.95303 -11.85803 -11.78615 -11.63059 -11.07005 -10.92150 -10.80350 -10.74169 -10.49362 -10.42550 -10.01781 -9.79325 -9.59174 -9.42315 -9.21629 -8.99149 -8.60185 -8.22318 -6.14906 -4.14221 2.74504 3.20342 3.24179 3.29616 3.31051 3.74985 4.34156 4.48141 4.56638 4.71819 4.87559 4.91953 5.10518 5.20986 5.27601 5.33996 5.43257 5.48894 5.54404 5.58729 5.61526 5.61627 5.64596 5.68517 5.77200 5.82214 5.83804 5.89926 5.98351 5.99940 6.04087 6.10440 6.19686 6.24087 6.25667 6.31584 6.61549 6.65787 6.74857 6.85939 7.21537 7.36167 7.39593 7.65642 7.70808 8.35446 8.45164 8.90866 9.48131 10.98538 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024707 B = 0.004433 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.004177 B = 6315.282676 C = 6646.293142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.095 0.905 4 C -0.125 4.125 5 C -0.113 4.113 6 H 0.096 0.904 7 C 0.517 3.483 8 O -0.550 6.550 9 N -0.599 5.599 10 C 0.097 3.903 11 C -0.129 4.129 12 C 0.018 3.982 13 C -0.513 4.513 14 H 0.072 0.928 15 C 0.071 3.929 16 N -0.899 5.899 17 Si 0.874 3.126 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.261 1.261 21 C -0.115 4.115 22 C 0.107 3.893 23 C -0.144 4.144 24 C 0.089 3.911 25 H 0.058 0.942 26 C -0.143 4.143 27 O -0.381 6.381 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.030 0.970 38 H 0.264 0.736 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.266 -5.384 -3.776 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.013 3.987 3 H 0.113 0.887 4 C -0.163 4.163 5 C -0.134 4.134 6 H 0.114 0.886 7 C 0.305 3.695 8 O -0.429 6.429 9 N -0.331 5.331 10 C -0.026 4.026 11 C -0.167 4.167 12 C -0.001 4.001 13 C -0.550 4.550 14 H 0.090 0.910 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.702 3.298 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.185 1.185 21 C -0.154 4.154 22 C -0.015 4.015 23 C -0.182 4.182 24 C 0.031 3.969 25 H 0.076 0.924 26 C -0.201 4.201 27 O -0.301 6.301 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.549 -4.989 -3.548 18.586 hybrid contribution 0.733 -0.385 -1.249 1.499 sum -16.816 -5.374 -4.797 18.294 Atomic orbital electron populations 1.21733 0.93772 1.02125 1.02149 1.22497 0.94392 0.97834 0.83997 0.88706 1.21998 0.93002 1.01524 0.99810 1.21408 0.97269 0.94364 1.00340 0.88591 1.20524 0.81865 0.91053 0.76024 1.90554 1.57141 1.44140 1.51063 1.48166 1.07106 1.09258 1.68528 1.21983 0.92529 0.88157 0.99929 1.22234 0.95026 1.01780 0.97666 1.19083 0.94003 0.89995 0.97069 1.20973 0.90428 1.46650 0.96974 0.91014 1.25063 0.95867 0.94879 0.97269 1.69912 0.99061 1.48334 1.36403 0.86921 0.78062 0.79160 0.85690 1.20520 1.21533 1.18501 1.21924 0.94615 1.01055 0.97787 1.21797 0.96731 0.82813 1.00123 1.22307 1.02367 1.00142 0.93344 1.21999 0.81458 0.98708 0.94736 0.92406 1.21756 1.01705 1.00673 0.95925 1.87846 1.20561 1.78267 1.43441 0.92460 0.92132 0.91371 0.90710 0.90890 0.90658 0.91929 0.91488 0.92280 0.95176 0.92656 0.91236 0.92575 0.92154 0.90007 0.89511 0.90050 0.90741 0.91975 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.57 37.16 0.36 -1.14 16 2 C 0.07 0.92 2.98 -26.68 -0.08 0.84 16 3 H 0.10 1.49 5.41 -51.93 -0.28 1.21 16 4 C -0.13 -1.47 4.62 -26.59 -0.12 -1.59 16 5 C -0.11 -1.39 2.16 -91.59 -0.20 -1.59 16 6 H 0.10 1.02 7.05 -51.93 -0.37 0.65 16 7 C 0.52 7.97 5.73 -10.99 -0.06 7.90 16 8 O -0.55 -9.74 12.97 5.55 0.07 -9.67 16 9 N -0.60 -9.45 2.98 -173.04 -0.52 -9.96 16 10 C 0.10 1.44 5.53 -3.94 -0.02 1.42 16 11 C -0.13 -2.36 4.92 -26.83 -0.13 -2.49 16 12 C 0.02 0.37 1.61 -91.73 -0.15 0.23 16 13 C -0.51 -13.47 8.86 -34.44 -0.31 -13.78 16 14 H 0.07 2.09 8.06 -52.49 -0.42 1.66 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -26.54 13.96 55.43 0.77 -25.76 16 17 Si 0.87 20.21 26.40 -169.99 -4.49 15.72 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.26 -5.51 5.91 56.52 0.33 -5.18 16 21 C -0.12 -2.19 5.34 -26.61 -0.14 -2.33 16 22 C 0.11 1.78 6.42 -3.71 -0.02 1.76 16 23 C -0.14 -1.73 4.56 -26.59 -0.12 -1.85 16 24 C 0.09 1.20 3.04 -26.68 -0.08 1.12 16 25 H 0.06 0.91 7.38 -51.93 -0.38 0.53 16 26 C -0.14 -1.67 9.56 37.16 0.36 -1.32 16 27 O -0.38 -5.41 10.05 -35.23 -0.35 -5.77 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.93 4.74 -51.92 -0.25 0.68 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.27 6.71 -51.93 -0.35 0.93 16 36 H 0.06 1.09 7.61 -51.93 -0.40 0.69 16 37 H 0.03 0.65 5.82 -51.93 -0.30 0.35 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.37 7.04 -51.93 -0.37 1.00 16 43 H 0.09 1.07 5.84 -51.93 -0.30 0.77 16 44 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -29.79 346.65 -8.22 -38.01 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -8.11 Total: 3.18 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.82 Total: -10.98 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.26 Total: -35.73 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.28 Total: -15.44 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.49 Total: 15.72 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.79 -8.22 -38.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334966235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.299 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds