Wall clock time and date at job start Tue Mar 31 2020 07:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.47941 * 2 1 4 4 C 1.53091 * 109.47715 * 239.98210 * 2 1 3 5 5 C 1.53182 * 109.16185 * 182.39581 * 4 2 1 6 6 H 1.09004 * 109.54270 * 176.84452 * 5 4 2 7 7 C 1.50692 * 109.54204 * 297.11383 * 5 4 2 8 8 O 1.21283 * 120.00428 * 11.64161 * 7 5 4 9 9 N 1.34774 * 119.99864 * 191.63669 * 7 5 4 10 10 C 1.46924 * 120.63212 * 5.32463 * 9 7 5 11 11 C 1.52755 * 109.01170 * 233.58297 * 10 9 7 12 12 C 1.53044 * 109.38175 * 305.58611 * 11 10 9 13 13 C 1.50705 * 109.46013 * 181.25952 * 12 11 10 14 14 H 1.07997 * 119.99941 * 272.37207 * 13 12 11 15 15 C 1.37871 * 120.00236 * 92.37202 * 13 12 11 16 16 N 1.31511 * 120.00517 * 174.41516 * 15 13 12 17 17 Si 1.86800 * 120.00061 * 354.41759 * 15 13 12 18 18 H 1.48496 * 109.47311 * 93.64430 * 17 15 13 19 19 H 1.48500 * 109.47452 * 213.65054 * 17 15 13 20 20 H 1.48506 * 109.46910 * 333.65029 * 17 15 13 21 21 C 1.53036 * 109.53675 * 61.23806 * 12 11 10 22 22 C 1.46923 * 120.63413 * 185.59997 * 9 7 5 23 23 C 1.53177 * 109.03453 * 56.97962 * 5 4 2 24 24 C 1.53094 * 109.16432 * 303.02305 * 23 5 4 25 25 H 1.09000 * 109.47300 * 297.61260 * 24 23 5 26 26 C 1.53001 * 109.47654 * 177.59186 * 24 23 5 27 27 O 1.42896 * 109.41507 * 57.60759 * 24 23 5 28 28 H 1.08998 * 109.46771 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46761 * 300.02102 * 1 2 3 30 30 H 1.08997 * 109.46876 * 60.02096 * 1 2 3 31 31 H 1.09004 * 109.52692 * 62.48806 * 4 2 1 32 32 H 1.09000 * 109.57476 * 302.33537 * 4 2 1 33 33 H 1.09008 * 109.58736 * 353.41744 * 10 9 7 34 34 H 1.09001 * 109.59301 * 113.83918 * 10 9 7 35 35 H 1.09000 * 109.56799 * 185.54814 * 11 10 9 36 36 H 1.09003 * 109.39119 * 65.51200 * 11 10 9 37 37 H 1.09001 * 109.45810 * 301.21695 * 12 11 10 38 38 H 0.96999 * 120.00706 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.49649 * 178.68025 * 21 12 11 40 40 H 1.09003 * 109.49984 * 58.58742 * 21 12 11 41 41 H 1.08999 * 109.59264 * 246.15764 * 22 9 7 42 42 H 1.09001 * 109.58762 * 6.58611 * 22 9 7 43 43 H 1.08999 * 109.52112 * 183.10875 * 23 5 4 44 44 H 1.09009 * 109.57057 * 62.95573 * 23 5 4 45 45 H 1.08993 * 109.47411 * 60.00260 * 26 24 23 46 46 H 1.08998 * 109.47388 * 299.99368 * 26 24 23 47 47 H 1.09001 * 109.46411 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7220 -1.2497 5 6 3.5712 -0.7704 -1.2125 6 1 3.9392 -1.3321 -2.0711 7 6 4.1209 0.6321 -1.2520 8 8 3.3798 1.5788 -1.0923 9 7 5.4363 0.8345 -1.4648 10 6 6.3265 -0.2923 -1.7752 11 6 7.4993 -0.2842 -0.7965 12 6 8.1819 1.0851 -0.8331 13 6 9.3581 1.0851 0.1091 14 1 9.2175 1.3431 1.1483 15 6 10.6136 0.7555 -0.3555 16 7 11.6572 0.8613 0.4378 17 14 10.8326 0.1589 -2.1121 18 1 11.1671 1.3105 -2.9880 19 1 11.9323 -0.8377 -2.1630 20 1 9.5722 -0.4704 -2.5818 21 6 7.1857 2.1651 -0.4050 22 6 6.0084 2.1854 -1.3849 23 6 4.0179 -1.4597 0.0804 24 6 3.4310 -0.7092 1.2787 25 1 3.8196 0.3091 1.2956 26 6 3.8233 -1.4266 2.5719 27 8 2.0069 -0.6743 1.1662 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 1.7146 -0.1841 -2.1400 32 1 1.6444 -1.7373 -1.2723 33 1 5.7777 -1.2291 -1.6780 34 1 6.7030 -0.1910 -2.7931 35 1 8.2158 -1.0556 -1.0789 36 1 7.1315 -0.4806 0.2107 37 1 8.5281 1.2913 -1.8458 38 1 12.5404 0.6291 0.1110 39 1 7.6791 3.1371 -0.4087 40 1 6.8203 1.9460 0.5983 41 1 6.3584 2.4930 -2.3702 42 1 5.2498 2.8831 -1.0301 43 1 5.1061 -1.4493 0.1414 44 1 3.6626 -2.4902 0.0864 45 1 4.9095 -1.4540 2.6571 46 1 3.4343 -2.4447 2.5550 47 1 3.4057 -0.8918 3.4250 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334966235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:02 Heat of formation + Delta-G solvation = -119.360437 kcal Electronic energy + Delta-G solvation = -26008.283674 eV Core-core repulsion = 22575.328900 eV Total energy + Delta-G solvation = -3432.954775 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99740 -39.87555 -38.35979 -35.45423 -34.77713 -34.52869 -33.28457 -31.95799 -30.60102 -28.36588 -27.34127 -25.47263 -24.19637 -23.66422 -22.74868 -22.24474 -21.06233 -19.53843 -18.97586 -18.02597 -17.49900 -16.96659 -16.59154 -16.43936 -16.32460 -15.40167 -15.26431 -14.96914 -14.90226 -14.70679 -14.52102 -14.23501 -13.77136 -13.67736 -13.62615 -13.34234 -13.21296 -12.94492 -12.85090 -12.82807 -12.80588 -12.66583 -12.39426 -12.08781 -11.85570 -11.79417 -11.69911 -11.54910 -11.39614 -11.11227 -11.06504 -10.69076 -10.60099 -10.08235 -9.55672 -8.25759 -6.30069 1.39229 1.40614 1.52513 1.57333 2.04719 2.39140 2.76885 3.10046 3.42239 3.62247 3.77084 3.89487 3.93832 4.09026 4.15473 4.19924 4.28050 4.29971 4.38371 4.49766 4.50887 4.55278 4.59319 4.67926 4.71089 4.76952 4.79772 4.80435 4.83937 4.91527 4.96845 4.97676 5.09362 5.09714 5.16393 5.19723 5.22326 5.29202 5.36711 5.45508 5.59683 5.71093 5.79046 6.34934 6.37571 6.47577 6.77458 7.16467 7.36041 8.91648 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024707 B = 0.004433 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.004177 B = 6315.282676 C = 6646.293142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.063 3.937 3 H 0.063 0.937 4 C -0.121 4.121 5 C -0.110 4.110 6 H 0.127 0.873 7 C 0.513 3.487 8 O -0.577 6.577 9 N -0.603 5.603 10 C 0.103 3.897 11 C -0.124 4.124 12 C 0.016 3.984 13 C -0.515 4.515 14 H 0.022 0.978 15 C 0.008 3.992 16 N -0.955 5.955 17 Si 0.941 3.059 18 H -0.277 1.277 19 H -0.292 1.292 20 H -0.221 1.221 21 C -0.109 4.109 22 C 0.116 3.884 23 C -0.139 4.139 24 C 0.084 3.916 25 H 0.023 0.977 26 C -0.140 4.140 27 O -0.390 6.390 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.060 0.940 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.203 -7.795 -6.647 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.006 3.994 3 H 0.080 0.920 4 C -0.159 4.159 5 C -0.131 4.131 6 H 0.145 0.855 7 C 0.303 3.697 8 O -0.458 6.458 9 N -0.335 5.335 10 C -0.019 4.019 11 C -0.163 4.163 12 C -0.003 4.003 13 C -0.553 4.553 14 H 0.040 0.960 15 C -0.188 4.188 16 N -0.596 5.596 17 Si 0.764 3.236 18 H -0.203 1.203 19 H -0.219 1.219 20 H -0.143 1.143 21 C -0.147 4.147 22 C -0.006 4.006 23 C -0.176 4.176 24 C 0.027 3.973 25 H 0.041 0.959 26 C -0.198 4.198 27 O -0.311 6.311 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.125 0.875 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.525 -7.406 -6.420 21.847 hybrid contribution 1.313 0.484 -0.176 1.410 sum -18.212 -6.921 -6.596 20.569 Atomic orbital electron populations 1.21724 0.92003 1.03068 1.02560 1.22546 0.95864 0.96366 0.84651 0.91964 1.21992 0.92498 1.02583 0.98809 1.21515 0.97701 0.92311 1.01570 0.85495 1.21166 0.81394 0.92252 0.74911 1.90562 1.57782 1.45513 1.51901 1.48243 1.07579 1.08949 1.68745 1.22014 0.91290 0.89308 0.99310 1.22047 0.96347 0.99206 0.98658 1.19069 0.92806 0.92685 0.95714 1.21263 0.92683 1.45563 0.95765 0.95976 1.26008 0.95280 0.95158 1.02355 1.70089 0.99757 1.50550 1.39161 0.85852 0.79489 0.78695 0.79535 1.20262 1.21865 1.14335 1.21779 0.95275 0.99962 0.97726 1.21593 0.95310 0.83871 0.99874 1.22291 1.02071 1.01047 0.92223 1.22025 0.81380 0.97388 0.96541 0.95868 1.21743 1.01762 1.01271 0.94979 1.87839 1.20788 1.78166 1.44280 0.91148 0.92695 0.90101 0.90379 0.88535 0.87153 0.90296 0.91536 0.93114 0.94615 0.92733 0.92138 0.94347 0.90546 0.90549 0.89780 0.87527 0.90680 0.90347 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.57 71.99 0.69 -1.97 16 2 C 0.06 1.57 2.98 30.63 0.09 1.66 16 3 H 0.06 1.98 5.41 -2.39 -0.01 1.96 16 4 C -0.12 -2.43 4.62 30.69 0.14 -2.29 16 5 C -0.11 -2.31 2.16 -11.42 -0.02 -2.34 16 6 H 0.13 1.94 7.05 -2.39 -0.02 1.93 16 7 C 0.51 14.73 5.73 87.65 0.50 15.23 16 8 O -0.58 -20.06 12.97 -3.04 -0.04 -20.10 16 9 N -0.60 -17.58 2.98 -819.76 -2.44 -20.02 16 10 C 0.10 2.65 5.53 86.22 0.48 3.12 16 11 C -0.12 -4.27 4.92 30.53 0.15 -4.12 16 12 C 0.02 0.68 1.61 -11.51 -0.02 0.66 16 13 C -0.51 -27.92 8.86 25.60 0.23 -27.70 16 14 H 0.02 1.37 8.06 -2.91 -0.02 1.34 16 15 C 0.01 0.46 5.47 84.65 0.46 0.93 16 16 N -0.96 -58.49 13.96 21.44 0.30 -58.19 16 17 Si 0.94 40.88 26.40 68.60 1.81 42.69 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.22 -8.13 5.91 99.48 0.59 -7.54 16 21 C -0.11 -4.18 5.34 30.67 0.16 -4.01 16 22 C 0.12 3.72 6.42 86.36 0.55 4.28 16 23 C -0.14 -2.89 4.56 30.68 0.14 -2.75 16 24 C 0.08 2.20 3.04 30.63 0.09 2.29 16 25 H 0.02 0.75 7.38 -2.39 -0.02 0.74 16 26 C -0.14 -3.14 9.56 71.98 0.69 -2.45 16 27 O -0.39 -10.60 10.05 -148.98 -1.50 -12.09 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.11 2.12 4.74 -2.38 -0.01 2.11 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.31 6.71 -2.39 -0.02 2.29 16 36 H 0.05 1.82 7.61 -2.39 -0.02 1.80 16 37 H 0.04 1.46 5.82 -2.39 -0.01 1.45 16 38 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.08 2.55 7.04 -2.39 -0.02 2.53 16 43 H 0.08 1.82 5.84 -2.39 -0.01 1.80 16 44 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -68.29 346.65 3.29 -65.00 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.82 Total: 22.18 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 4.34 Total: -19.46 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -2.14 Total: -78.21 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -1.54 Total: -32.19 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.81 Total: 42.69 kcal Total: -68.29 3.29 -65.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334966235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.360 kcal (2) G-P(sol) polarization free energy of solvation -68.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds