Wall clock time and date at job start Tue Mar 31 2020 07:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.48206 * 2 1 4 4 C 1.53087 * 109.48141 * 120.03215 * 2 1 3 5 5 C 1.53174 * 109.16837 * 62.37343 * 4 2 1 6 6 C 1.50695 * 109.54558 * 176.84785 * 5 4 2 7 7 O 1.21281 * 120.00025 * 337.09947 * 6 5 4 8 8 N 1.34775 * 119.99754 * 157.09274 * 6 5 4 9 9 C 1.46929 * 120.62977 * 174.45471 * 8 6 5 10 10 C 1.53198 * 108.77480 * 233.63579 * 9 8 6 11 11 C 1.53040 * 109.31108 * 305.35925 * 10 9 8 12 12 C 1.50702 * 109.46120 * 181.38512 * 11 10 9 13 13 H 1.08001 * 119.99942 * 354.34459 * 12 11 10 14 14 C 1.37870 * 120.00161 * 174.33631 * 12 11 10 15 15 N 1.31516 * 120.00172 * 156.17441 * 14 12 11 16 16 Si 1.86800 * 120.00093 * 336.17534 * 14 12 11 17 17 H 1.48507 * 109.47284 * 179.97438 * 16 14 12 18 18 H 1.48506 * 109.47045 * 59.99955 * 16 14 12 19 19 H 1.48499 * 109.47536 * 299.99853 * 16 14 12 20 20 C 1.53046 * 109.52307 * 61.37622 * 11 10 9 21 21 C 1.46924 * 120.63545 * 354.48294 * 8 6 5 22 22 C 1.53180 * 109.03728 * 56.97539 * 5 4 2 23 23 C 1.53091 * 109.16343 * 303.02592 * 22 5 4 24 24 H 1.09000 * 109.47959 * 297.62230 * 23 22 5 25 25 C 1.53002 * 109.47819 * 177.58578 * 23 22 5 26 26 O 1.42901 * 109.41567 * 57.60839 * 23 22 5 27 27 H 1.09001 * 109.47137 * 299.96880 * 1 2 3 28 28 H 1.09001 * 109.47300 * 59.97073 * 1 2 3 29 29 H 1.08999 * 109.47373 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.52046 * 302.45956 * 4 2 1 31 31 H 1.09000 * 109.51863 * 182.28062 * 4 2 1 32 32 H 1.09008 * 109.53760 * 297.02409 * 5 4 2 33 33 H 1.08997 * 109.58717 * 113.84704 * 9 8 6 34 34 H 1.08998 * 109.70061 * 353.48622 * 9 8 6 35 35 H 1.09004 * 109.49512 * 185.41078 * 10 9 8 36 36 H 1.08996 * 109.52845 * 65.33363 * 10 9 8 37 37 H 1.08997 * 109.46369 * 301.36588 * 11 10 9 38 38 H 0.97006 * 119.99703 * 354.95268 * 15 14 12 39 39 H 1.08996 * 109.49650 * 58.58044 * 20 11 10 40 40 H 1.09007 * 109.49234 * 178.67507 * 20 11 10 41 41 H 1.09007 * 109.58549 * 246.15607 * 21 8 6 42 42 H 1.09006 * 109.58599 * 6.42904 * 21 8 6 43 43 H 1.09004 * 109.51468 * 62.92836 * 22 5 4 44 44 H 1.08995 * 109.52117 * 183.11425 * 22 5 4 45 45 H 1.08999 * 109.47592 * 300.06291 * 25 23 22 46 46 H 1.09010 * 109.46659 * 60.05702 * 25 23 22 47 47 H 1.08998 * 109.47007 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7223 1.2495 5 6 1.5757 -2.1814 1.2121 6 6 2.1382 -2.9202 2.3990 7 8 3.1348 -2.5076 2.9534 8 7 1.5336 -4.0394 2.8444 9 6 2.1354 -4.8374 3.9213 10 6 2.2630 -6.2886 3.4474 11 6 0.8944 -6.7913 2.9822 12 6 1.0091 -8.2296 2.5471 13 1 1.9772 -8.7070 2.5103 14 6 -0.1216 -8.9359 2.1961 15 7 -0.0255 -9.9767 1.3978 16 14 -1.7903 -8.4146 2.8542 17 1 -2.8365 -9.3300 2.3317 18 1 -2.0838 -7.0265 2.4156 19 1 -1.7775 -8.4726 4.3380 20 6 0.4094 -5.9401 1.8065 21 6 0.2605 -4.4850 2.2618 22 6 2.0763 -2.8323 -0.0810 23 6 1.5644 -2.0284 -1.2791 24 1 0.4748 -2.0550 -1.2958 25 6 2.1097 -2.6372 -2.5725 26 8 2.0065 -0.6742 -1.1665 27 1 -0.3633 0.5133 0.8903 28 1 -0.3634 0.5143 -0.8897 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6421 -0.2357 2.1398 31 1 3.1297 -0.6874 1.2708 32 1 0.4867 -2.2180 1.2424 33 1 1.4995 -4.7963 4.8056 34 1 3.1228 -4.4437 4.1626 35 1 2.6186 -6.9098 4.2694 36 1 2.9703 -6.3407 2.6197 37 1 0.1816 -6.7160 3.8034 38 1 0.8285 -10.2037 0.9976 39 1 1.1342 -5.9950 0.9942 40 1 -0.5545 -6.3133 1.4604 41 1 -0.5284 -4.4152 3.0109 42 1 0.0097 -3.8564 1.4074 43 1 3.1663 -2.8400 -0.0865 44 1 1.7036 -3.8547 -0.1421 45 1 3.1993 -2.6111 -2.5553 46 1 1.7724 -3.6703 -2.6583 47 1 1.7455 -2.0646 -3.4254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334966236.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:18 Heat of formation + Delta-G solvation = -104.769392 kcal Electronic energy + Delta-G solvation = -25727.964922 eV Core-core repulsion = 22295.642862 eV Total energy + Delta-G solvation = -3432.322059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73500 -39.16035 -37.05508 -33.97647 -33.61728 -33.37930 -31.49578 -30.58464 -29.60152 -26.82649 -26.39852 -24.37044 -22.80949 -22.56719 -22.09089 -20.02424 -19.35956 -18.34768 -17.63553 -17.04629 -16.49605 -16.25008 -15.32358 -15.20680 -14.60985 -14.48844 -13.93794 -13.82266 -13.58411 -13.35742 -13.11749 -13.02553 -12.84271 -12.67212 -12.54225 -12.20560 -12.09808 -12.00533 -11.86278 -11.55493 -11.42902 -11.08523 -10.88091 -10.80498 -10.64204 -10.39996 -10.32497 -10.11696 -9.82338 -9.78383 -9.55650 -9.26433 -8.96163 -8.33570 -8.16284 -6.50724 -4.10477 2.78170 3.24828 3.30211 3.38848 3.55713 3.60703 4.43453 4.44727 4.53479 4.62615 4.71833 4.89428 4.97932 5.08698 5.12564 5.14108 5.17954 5.30344 5.36169 5.40297 5.56481 5.59414 5.63677 5.64501 5.72634 5.78364 5.80864 5.86063 5.89063 5.93206 5.97826 6.01996 6.08450 6.20883 6.23466 6.28369 6.61357 6.68554 6.77390 6.88705 7.13407 7.21169 7.44165 7.71044 8.11088 8.33343 8.38707 8.85538 9.55233 10.84979 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.004588 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.175379 B = 6101.793355 C = 6637.057999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.089 3.911 3 H 0.104 0.896 4 C -0.130 4.130 5 C -0.110 4.110 6 C 0.519 3.481 7 O -0.553 6.553 8 N -0.600 5.600 9 C 0.108 3.892 10 C -0.113 4.113 11 C 0.024 3.976 12 C -0.606 4.606 13 H 0.055 0.945 14 C 0.037 3.963 15 N -0.899 5.899 16 Si 1.038 2.962 17 H -0.286 1.286 18 H -0.278 1.278 19 H -0.284 1.284 20 C -0.130 4.130 21 C 0.098 3.902 22 C -0.139 4.139 23 C 0.087 3.913 24 H 0.063 0.937 25 C -0.145 4.145 26 O -0.374 6.374 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.269 0.731 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 18.313 -3.490 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.031 3.969 3 H 0.122 0.878 4 C -0.168 4.168 5 C -0.131 4.131 6 C 0.306 3.694 7 O -0.431 6.431 8 N -0.333 5.333 9 C -0.014 4.014 10 C -0.151 4.151 11 C 0.005 3.995 12 C -0.643 4.643 13 H 0.073 0.927 14 C -0.169 4.169 15 N -0.532 5.532 16 Si 0.866 3.134 17 H -0.212 1.212 18 H -0.204 1.204 19 H -0.210 1.210 20 C -0.169 4.169 21 C -0.024 4.024 22 C -0.177 4.177 23 C 0.029 3.971 24 H 0.081 0.919 25 C -0.202 4.202 26 O -0.294 6.294 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.709 18.156 -3.307 18.534 hybrid contribution 1.334 0.084 0.271 1.364 sum -0.375 18.241 -3.036 18.495 Atomic orbital electron populations 1.22489 0.96491 1.02857 1.02752 1.22168 0.93366 0.96379 0.84983 0.87848 1.22046 1.03104 0.93431 0.98238 1.21406 1.01674 0.95972 0.94045 1.20458 0.83821 0.80566 0.84507 1.90639 1.26413 1.67052 1.59024 1.48160 1.23489 1.24339 1.37277 1.21758 0.98626 0.92222 0.88749 1.21847 1.00159 0.92529 1.00611 1.18915 0.92184 0.95671 0.92724 1.21905 0.95730 0.96018 1.50653 0.92678 1.25721 1.03078 0.94519 0.93625 1.70843 1.28292 1.28934 1.25111 0.84126 0.76393 0.76042 0.76845 1.21224 1.20425 1.21035 1.22383 1.01966 0.91564 1.00970 1.22045 0.84516 0.98129 0.97754 1.22201 1.02732 1.00127 0.92668 1.22074 0.98122 0.82003 0.94873 0.91893 1.21770 1.02176 1.00619 0.95675 1.87977 1.73832 1.24559 1.42992 0.91403 0.91757 0.91837 0.90731 0.89795 0.88788 0.92113 0.90112 0.91691 0.92732 0.96181 0.92096 0.92416 0.91278 0.91838 0.90854 0.90369 0.89842 0.91773 0.90749 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 8.65 37.16 0.32 -1.27 16 2 C 0.09 0.89 3.91 -26.69 -0.10 0.78 16 3 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.52 4.49 -26.60 -0.12 -1.64 16 5 C -0.11 -1.40 1.45 -91.59 -0.13 -1.53 16 6 C 0.52 8.46 6.83 -10.99 -0.08 8.39 16 7 O -0.55 -10.65 15.45 5.56 0.09 -10.56 16 8 N -0.60 -9.96 2.97 -172.77 -0.51 -10.47 16 9 C 0.11 1.88 6.41 -3.71 -0.02 1.85 16 10 C -0.11 -2.23 5.30 -26.61 -0.14 -2.37 16 11 C 0.02 0.53 1.66 -91.73 -0.15 0.38 16 12 C -0.61 -16.21 8.76 -34.44 -0.30 -16.52 16 13 H 0.05 1.62 7.99 -52.49 -0.42 1.20 16 14 C 0.04 1.01 5.23 -17.82 -0.09 0.91 16 15 N -0.90 -26.60 13.70 55.43 0.76 -25.84 16 16 Si 1.04 23.80 26.51 -169.99 -4.51 19.29 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -5.71 6.05 56.52 0.34 -5.37 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C -0.13 -2.54 5.09 -26.61 -0.14 -2.68 16 21 C 0.10 1.53 6.18 -3.71 -0.02 1.51 16 22 C -0.14 -1.73 4.58 -26.59 -0.12 -1.86 16 23 C 0.09 0.95 2.94 -26.68 -0.08 0.87 16 24 H 0.06 0.63 6.34 -51.93 -0.33 0.30 16 25 C -0.15 -1.44 9.56 37.16 0.36 -1.08 16 26 O -0.37 -4.42 10.24 -35.23 -0.36 -4.79 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.55 4.98 -51.93 -0.26 0.29 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.13 7.78 -51.93 -0.40 0.73 16 32 H 0.09 1.06 4.83 -51.92 -0.25 0.81 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.42 7.05 -51.93 -0.37 1.05 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.45 6.71 -51.93 -0.35 0.10 16 38 H 0.27 7.97 8.73 -40.82 -0.36 7.61 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.41 5.47 -51.93 -0.28 1.12 16 41 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 42 H 0.07 0.95 5.14 -51.93 -0.27 0.68 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.08 1.07 7.76 -51.93 -0.40 0.67 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 348.81 15.07 5.26 5.26 Total: -1.00 -30.50 348.81 -8.14 -38.65 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.04 Total: 2.70 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -0.83 Total: -14.24 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.25 Total: -36.31 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.27 Total: -15.35 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -4.51 Total: 19.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.50 -8.14 -38.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334966236.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.124 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds