Wall clock time and date at job start Tue Mar 31 2020 07:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.48206 * 2 1 4 4 C 1.53087 * 109.48141 * 120.03215 * 2 1 3 5 5 C 1.53174 * 109.16837 * 62.37343 * 4 2 1 6 6 C 1.50695 * 109.54558 * 176.84785 * 5 4 2 7 7 O 1.21281 * 120.00025 * 337.09947 * 6 5 4 8 8 N 1.34775 * 119.99754 * 157.09274 * 6 5 4 9 9 C 1.46929 * 120.62977 * 174.45471 * 8 6 5 10 10 C 1.53198 * 108.77480 * 233.63579 * 9 8 6 11 11 C 1.53040 * 109.31108 * 305.35925 * 10 9 8 12 12 C 1.50702 * 109.46120 * 181.38512 * 11 10 9 13 13 H 1.08001 * 119.99942 * 354.34459 * 12 11 10 14 14 C 1.37870 * 120.00161 * 174.33631 * 12 11 10 15 15 N 1.31516 * 120.00172 * 156.17441 * 14 12 11 16 16 Si 1.86800 * 120.00093 * 336.17534 * 14 12 11 17 17 H 1.48507 * 109.47284 * 179.97438 * 16 14 12 18 18 H 1.48506 * 109.47045 * 59.99955 * 16 14 12 19 19 H 1.48499 * 109.47536 * 299.99853 * 16 14 12 20 20 C 1.53046 * 109.52307 * 61.37622 * 11 10 9 21 21 C 1.46924 * 120.63545 * 354.48294 * 8 6 5 22 22 C 1.53180 * 109.03728 * 56.97539 * 5 4 2 23 23 C 1.53091 * 109.16343 * 303.02592 * 22 5 4 24 24 H 1.09000 * 109.47959 * 297.62230 * 23 22 5 25 25 C 1.53002 * 109.47819 * 177.58578 * 23 22 5 26 26 O 1.42901 * 109.41567 * 57.60839 * 23 22 5 27 27 H 1.09001 * 109.47137 * 299.96880 * 1 2 3 28 28 H 1.09001 * 109.47300 * 59.97073 * 1 2 3 29 29 H 1.08999 * 109.47373 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.52046 * 302.45956 * 4 2 1 31 31 H 1.09000 * 109.51863 * 182.28062 * 4 2 1 32 32 H 1.09008 * 109.53760 * 297.02409 * 5 4 2 33 33 H 1.08997 * 109.58717 * 113.84704 * 9 8 6 34 34 H 1.08998 * 109.70061 * 353.48622 * 9 8 6 35 35 H 1.09004 * 109.49512 * 185.41078 * 10 9 8 36 36 H 1.08996 * 109.52845 * 65.33363 * 10 9 8 37 37 H 1.08997 * 109.46369 * 301.36588 * 11 10 9 38 38 H 0.97006 * 119.99703 * 354.95268 * 15 14 12 39 39 H 1.08996 * 109.49650 * 58.58044 * 20 11 10 40 40 H 1.09007 * 109.49234 * 178.67507 * 20 11 10 41 41 H 1.09007 * 109.58549 * 246.15607 * 21 8 6 42 42 H 1.09006 * 109.58599 * 6.42904 * 21 8 6 43 43 H 1.09004 * 109.51468 * 62.92836 * 22 5 4 44 44 H 1.08995 * 109.52117 * 183.11425 * 22 5 4 45 45 H 1.08999 * 109.47592 * 300.06291 * 25 23 22 46 46 H 1.09010 * 109.46659 * 60.05702 * 25 23 22 47 47 H 1.08998 * 109.47007 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7223 1.2495 5 6 1.5757 -2.1814 1.2121 6 6 2.1382 -2.9202 2.3990 7 8 3.1348 -2.5076 2.9534 8 7 1.5336 -4.0394 2.8444 9 6 2.1354 -4.8374 3.9213 10 6 2.2630 -6.2886 3.4474 11 6 0.8944 -6.7913 2.9822 12 6 1.0091 -8.2296 2.5471 13 1 1.9772 -8.7070 2.5103 14 6 -0.1216 -8.9359 2.1961 15 7 -0.0255 -9.9767 1.3978 16 14 -1.7903 -8.4146 2.8542 17 1 -2.8365 -9.3300 2.3317 18 1 -2.0838 -7.0265 2.4156 19 1 -1.7775 -8.4726 4.3380 20 6 0.4094 -5.9401 1.8065 21 6 0.2605 -4.4850 2.2618 22 6 2.0763 -2.8323 -0.0810 23 6 1.5644 -2.0284 -1.2791 24 1 0.4748 -2.0550 -1.2958 25 6 2.1097 -2.6372 -2.5725 26 8 2.0065 -0.6742 -1.1665 27 1 -0.3633 0.5133 0.8903 28 1 -0.3634 0.5143 -0.8897 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6421 -0.2357 2.1398 31 1 3.1297 -0.6874 1.2708 32 1 0.4867 -2.2180 1.2424 33 1 1.4995 -4.7963 4.8056 34 1 3.1228 -4.4437 4.1626 35 1 2.6186 -6.9098 4.2694 36 1 2.9703 -6.3407 2.6197 37 1 0.1816 -6.7160 3.8034 38 1 0.8285 -10.2037 0.9976 39 1 1.1342 -5.9950 0.9942 40 1 -0.5545 -6.3133 1.4604 41 1 -0.5284 -4.4152 3.0109 42 1 0.0097 -3.8564 1.4074 43 1 3.1663 -2.8400 -0.0865 44 1 1.7036 -3.8547 -0.1421 45 1 3.1993 -2.6111 -2.5553 46 1 1.7724 -3.6703 -2.6583 47 1 1.7455 -2.0646 -3.4254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334966236.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:17 Heat of formation + Delta-G solvation = -123.466962 kcal Electronic energy + Delta-G solvation = -25728.775709 eV Core-core repulsion = 22295.642862 eV Total energy + Delta-G solvation = -3433.132847 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.84799 -40.26634 -38.53799 -35.45858 -34.85983 -34.32596 -33.26085 -32.00998 -30.44082 -28.09320 -27.62225 -25.62184 -24.09490 -23.92988 -23.30267 -21.41946 -20.42135 -19.68309 -19.64885 -18.31774 -17.42311 -17.19552 -16.48599 -16.37623 -15.87204 -15.58782 -15.41782 -15.29445 -14.97948 -14.66659 -14.39153 -14.32332 -14.19909 -13.79453 -13.61814 -13.45650 -13.18469 -12.96012 -12.81862 -12.71392 -12.49802 -12.35710 -12.29798 -12.13728 -11.97425 -11.79823 -11.74592 -11.54357 -11.29899 -11.15820 -10.92552 -10.80045 -10.36760 -10.29209 -9.65332 -8.70160 -6.31073 1.48916 1.51430 1.58158 1.77616 1.99137 2.54585 2.81242 3.04685 3.36281 3.60774 3.67825 3.85144 3.90219 4.08031 4.11963 4.15637 4.24315 4.27021 4.30699 4.35449 4.43387 4.44920 4.47104 4.58130 4.59662 4.73500 4.76951 4.78307 4.82924 4.92774 4.96209 4.97438 5.08152 5.11475 5.13097 5.14085 5.19787 5.29696 5.39684 5.40891 5.56512 5.75575 6.04255 6.16242 6.33470 6.41596 6.60131 7.09953 7.44372 8.63448 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.004588 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.175379 B = 6101.793355 C = 6637.057999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.088 3.912 3 H 0.116 0.884 4 C -0.126 4.126 5 C -0.103 4.103 6 C 0.515 3.485 7 O -0.587 6.587 8 N -0.604 5.604 9 C 0.116 3.884 10 C -0.107 4.107 11 C 0.021 3.979 12 C -0.612 4.612 13 H 0.008 0.992 14 C -0.013 4.013 15 N -0.934 5.934 16 Si 1.078 2.922 17 H -0.295 1.295 18 H -0.230 1.230 19 H -0.269 1.269 20 C -0.126 4.126 21 C 0.104 3.896 22 C -0.136 4.136 23 C 0.089 3.911 24 H 0.082 0.918 25 C -0.146 4.146 26 O -0.390 6.390 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.031 0.969 37 H 0.033 0.967 38 H 0.251 0.749 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.552 21.290 -3.205 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.031 3.969 3 H 0.134 0.866 4 C -0.164 4.164 5 C -0.124 4.124 6 C 0.305 3.695 7 O -0.467 6.467 8 N -0.336 5.336 9 C -0.007 4.007 10 C -0.145 4.145 11 C 0.002 3.998 12 C -0.650 4.650 13 H 0.026 0.974 14 C -0.212 4.212 15 N -0.569 5.569 16 Si 0.898 3.102 17 H -0.221 1.221 18 H -0.154 1.154 19 H -0.195 1.195 20 C -0.164 4.164 21 C -0.018 4.018 22 C -0.175 4.175 23 C 0.032 3.968 24 H 0.100 0.900 25 C -0.203 4.203 26 O -0.310 6.310 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.490 21.159 -3.026 21.841 hybrid contribution 2.380 -0.921 0.185 2.559 sum -2.110 20.238 -2.840 20.545 Atomic orbital electron populations 1.22462 0.94650 1.03218 1.03866 1.22303 0.94788 0.96459 0.83392 0.86591 1.22022 1.01569 0.93078 0.99767 1.21456 1.02903 0.95979 0.92095 1.21111 0.83187 0.80370 0.84839 1.90626 1.27909 1.68002 1.60204 1.48254 1.23919 1.24328 1.37067 1.21602 0.99183 0.90155 0.89715 1.21718 0.98515 0.94622 0.99657 1.18927 0.93681 0.93062 0.94147 1.22143 0.93707 0.98880 1.50226 0.97380 1.27238 1.07276 0.93784 0.92895 1.70985 1.27300 1.31051 1.27588 0.83662 0.71343 0.78134 0.77045 1.22127 1.15372 1.19451 1.22188 1.01075 0.94028 0.99114 1.22098 0.84423 0.95601 0.99669 1.22179 1.01366 1.00334 0.93594 1.22122 0.99050 0.81479 0.94174 0.90014 1.21791 1.01585 1.01133 0.95805 1.87972 1.74446 1.24839 1.43702 0.89971 0.91060 0.91758 0.89786 0.92409 0.86170 0.89997 0.90663 0.92159 0.95012 0.94946 0.94024 0.94099 0.91511 0.89502 0.87486 0.92690 0.90239 0.92793 0.90215 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 8.65 71.98 0.62 -1.71 16 2 C 0.09 1.50 3.91 30.62 0.12 1.62 16 3 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.13 -2.68 4.49 30.68 0.14 -2.54 16 5 C -0.10 -2.36 1.45 -11.42 -0.02 -2.38 16 6 C 0.52 15.85 6.83 87.66 0.60 16.45 16 7 O -0.59 -22.21 15.45 -3.03 -0.05 -22.26 16 8 N -0.60 -18.49 2.97 -818.90 -2.43 -20.93 16 9 C 0.12 3.83 6.41 86.36 0.55 4.38 16 10 C -0.11 -4.21 5.30 30.67 0.16 -4.05 16 11 C 0.02 0.90 1.66 -11.51 -0.02 0.88 16 12 C -0.61 -33.62 8.76 25.60 0.22 -33.39 16 13 H 0.01 0.49 7.99 -2.91 -0.02 0.47 16 14 C -0.01 -0.74 5.23 84.65 0.44 -0.29 16 15 N -0.93 -57.11 13.70 21.44 0.29 -56.82 16 16 Si 1.08 46.12 26.51 68.60 1.82 47.94 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.23 -8.09 6.05 99.48 0.60 -7.49 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 20 C -0.13 -4.61 5.09 30.67 0.16 -4.45 16 21 C 0.10 2.81 6.18 86.36 0.53 3.34 16 22 C -0.14 -3.19 4.58 30.69 0.14 -3.05 16 23 C 0.09 1.74 2.94 30.63 0.09 1.83 16 24 H 0.08 1.32 6.34 -2.39 -0.02 1.30 16 25 C -0.15 -2.66 9.56 71.98 0.69 -1.97 16 26 O -0.39 -8.35 10.24 -148.98 -1.52 -9.88 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.80 4.98 -2.39 -0.01 0.79 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.53 7.78 -2.39 -0.02 1.51 16 32 H 0.12 2.12 4.83 -2.38 -0.01 2.11 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.07 2.59 7.05 -2.39 -0.02 2.57 16 35 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.03 1.34 6.71 -2.39 -0.02 1.32 16 38 H 0.25 15.73 8.73 -92.70 -0.81 14.92 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 2.49 5.47 -2.38 -0.01 2.48 16 41 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.11 2.21 5.14 -2.38 -0.01 2.20 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 1.91 7.76 -2.39 -0.02 1.89 16 45 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -69.36 348.81 3.34 -66.02 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.80 Total: 21.26 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 4.44 Total: -25.33 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.14 Total: -77.74 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.57 Total: -32.14 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.82 Total: 47.94 kcal Total: -69.36 3.34 -66.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334966236.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.446 kcal (2) G-P(sol) polarization free energy of solvation -69.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds