Wall clock time and date at job start Tue Mar 31 2020 07:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.48260 * 2 1 4 4 C 1.53099 * 109.48241 * 239.97811 * 2 1 3 5 5 C 1.53180 * 109.15864 * 297.62624 * 4 2 1 6 6 C 1.50694 * 109.53947 * 183.06162 * 5 4 2 7 7 O 1.21277 * 120.00334 * 22.05334 * 6 5 4 8 8 N 1.34777 * 119.99790 * 202.05306 * 6 5 4 9 9 C 1.46929 * 120.63323 * 4.04069 * 8 6 5 10 10 C 1.53619 * 108.54410 * 126.36442 * 9 8 6 11 11 C 1.53048 * 109.24175 * 54.86074 * 10 9 8 12 12 C 1.50692 * 109.46151 * 178.48820 * 11 10 9 13 13 H 1.08000 * 120.00389 * 120.06712 * 12 11 10 14 14 C 1.37880 * 120.00088 * 300.06569 * 12 11 10 15 15 N 1.31518 * 120.00095 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00106 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47067 * 60.00472 * 16 14 12 18 18 H 1.48501 * 109.47234 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47346 * 300.00339 * 16 14 12 20 20 C 1.53035 * 109.53397 * 298.50898 * 11 10 9 21 21 C 1.46935 * 120.63034 * 184.31937 * 8 6 5 22 22 C 1.53176 * 109.10804 * 302.97255 * 5 4 2 23 23 C 1.53285 * 109.06449 * 56.94670 * 22 5 4 24 24 H 1.09001 * 109.46853 * 62.44450 * 23 22 5 25 25 C 1.52998 * 109.45371 * 182.44822 * 23 22 5 26 26 O 1.42898 * 109.45529 * 302.43976 * 23 22 5 27 27 H 1.08996 * 109.47086 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46955 * 300.02434 * 1 2 3 29 29 H 1.08997 * 109.47381 * 60.02125 * 1 2 3 30 30 H 1.08998 * 109.52478 * 177.72312 * 4 2 1 31 31 H 1.08998 * 109.57064 * 57.55875 * 4 2 1 32 32 H 1.08997 * 109.54295 * 62.88426 * 5 4 2 33 33 H 1.09004 * 109.58394 * 246.20462 * 9 8 6 34 34 H 1.09004 * 109.58275 * 6.62367 * 9 8 6 35 35 H 1.08991 * 109.64092 * 294.86927 * 10 9 8 36 36 H 1.09001 * 109.45790 * 174.73597 * 10 9 8 37 37 H 1.09004 * 109.45917 * 58.52658 * 11 10 9 38 38 H 0.96994 * 120.00244 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.50216 * 301.40946 * 20 11 10 40 40 H 1.09004 * 109.52415 * 181.33039 * 20 11 10 41 41 H 1.08998 * 109.58569 * 353.37236 * 21 8 6 42 42 H 1.08998 * 109.58509 * 113.79988 * 21 8 6 43 43 H 1.09001 * 109.51845 * 176.93272 * 22 5 4 44 44 H 1.08992 * 109.52402 * 297.11651 * 22 5 4 45 45 H 1.09007 * 109.46601 * 179.97438 * 25 23 22 46 46 H 1.09002 * 109.47257 * 299.97593 * 25 23 22 47 47 H 1.08995 * 109.47751 * 59.98238 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7221 -1.2497 5 6 1.5757 -2.1812 -1.2124 6 6 2.1363 -2.9194 -2.4005 7 8 3.1232 -2.4981 -2.9657 8 7 1.5410 -4.0477 -2.8351 9 6 0.2953 -4.5226 -2.2173 10 6 -0.7505 -4.7298 -3.3234 11 6 -0.1793 -5.6694 -4.3879 12 6 -1.2149 -5.9056 -5.4568 13 1 -1.0065 -5.6319 -6.4806 14 6 -2.4285 -6.4714 -5.1280 15 7 -2.6826 -6.8044 -3.8813 16 14 -3.7125 -6.7635 -6.4529 17 1 -3.1594 -7.6762 -7.4855 18 1 -4.9199 -7.3784 -5.8451 19 1 -4.0787 -5.4689 -7.0814 20 6 1.0651 -5.0365 -5.0146 21 6 2.1286 -4.8297 -3.9315 22 6 2.0766 -2.8342 0.0796 23 6 1.5645 -2.0285 1.2789 24 1 0.4749 -2.0551 1.2958 25 6 2.1099 -2.6375 2.5721 26 8 2.0066 -0.6743 1.1663 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5142 0.8898 29 1 -0.3634 0.5135 -0.8901 30 1 3.1298 -0.6873 -1.2710 31 1 1.6430 -0.2358 -2.1405 32 1 0.4867 -2.2178 -1.2410 33 1 0.4791 -5.4659 -1.7029 34 1 -0.0657 -3.7802 -1.5056 35 1 -0.9967 -3.7708 -3.7790 36 1 -1.6503 -5.1706 -2.8943 37 1 0.0897 -6.6198 -3.9268 38 1 -3.5364 -7.2020 -3.6498 39 1 0.8018 -4.0744 -5.4544 40 1 1.4581 -5.6951 -5.7891 41 1 2.9775 -4.2899 -4.3512 42 1 2.4587 -5.7975 -3.5540 43 1 1.7038 -3.8567 0.1391 44 1 3.1664 -2.8420 0.0850 45 1 1.7463 -2.0645 3.4251 46 1 1.7726 -3.6705 2.6579 47 1 3.1994 -2.6113 2.5549 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334966237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:21 Heat of formation + Delta-G solvation = -104.765491 kcal Electronic energy + Delta-G solvation = -25505.397320 eV Core-core repulsion = 22073.075430 eV Total energy + Delta-G solvation = -3432.321890 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61392 -39.02853 -36.81665 -33.89673 -33.57619 -33.32425 -31.22832 -30.14314 -29.51710 -26.77427 -26.32763 -24.38415 -22.86520 -22.59325 -22.04743 -20.03157 -19.24381 -18.29025 -17.09961 -16.42246 -16.23985 -16.11911 -15.35399 -15.07660 -14.59612 -14.47650 -14.12232 -13.76351 -13.27694 -13.14227 -12.98598 -12.84034 -12.76122 -12.57528 -12.36383 -12.11767 -12.03905 -11.84006 -11.64912 -11.36842 -11.34850 -11.00118 -10.95471 -10.78134 -10.68098 -10.46372 -10.24127 -10.10721 -9.77072 -9.65571 -9.21504 -9.19986 -8.93098 -8.41739 -8.02452 -6.07114 -4.13276 2.93866 3.27044 3.31823 3.35012 3.41758 3.64660 4.37581 4.52280 4.63334 4.68702 4.77594 4.96722 5.07276 5.18174 5.18567 5.24038 5.25725 5.35051 5.41711 5.56251 5.62150 5.68683 5.74061 5.80359 5.82996 5.90693 5.92520 5.99454 6.02937 6.06261 6.09886 6.12643 6.23711 6.29699 6.42095 6.62107 6.86460 6.99815 7.10596 7.17127 7.23232 7.61975 7.87284 7.90697 7.99369 8.36113 8.54877 8.89883 9.52004 10.98386 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.003908 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.588693 B = 7163.030107 C = 7552.836898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.089 3.911 3 H 0.104 0.896 4 C -0.130 4.130 5 C -0.111 4.111 6 C 0.516 3.484 7 O -0.558 6.558 8 N -0.599 5.599 9 C 0.101 3.899 10 C -0.124 4.124 11 C 0.049 3.951 12 C -0.513 4.513 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C -0.123 4.123 21 C 0.111 3.889 22 C -0.136 4.136 23 C 0.085 3.915 24 H 0.064 0.936 25 C -0.144 4.144 26 O -0.375 6.375 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.105 0.895 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 9.094 11.236 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.031 3.969 3 H 0.121 0.879 4 C -0.168 4.168 5 C -0.132 4.132 6 C 0.304 3.696 7 O -0.437 6.437 8 N -0.330 5.330 9 C -0.021 4.021 10 C -0.162 4.162 11 C 0.031 3.969 12 C -0.551 4.551 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.161 4.161 21 C -0.011 4.011 22 C -0.175 4.175 23 C 0.028 3.972 24 H 0.082 0.918 25 C -0.201 4.201 26 O -0.295 6.295 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.477 9.291 11.175 15.911 hybrid contribution -1.122 -0.429 -1.037 1.587 sum 5.355 8.861 10.138 14.491 Atomic orbital electron populations 1.22491 0.96357 1.02989 1.02797 1.22183 0.93462 0.96321 0.84892 0.87857 1.22037 1.02938 0.93566 0.98263 1.21407 1.01992 0.95918 0.93880 1.20430 0.83715 0.80669 0.84764 1.90625 1.27208 1.67106 1.58773 1.48253 1.25358 1.24175 1.35260 1.22191 0.84350 0.98569 0.96972 1.22103 0.98642 0.99618 0.95865 1.18625 0.90943 0.93723 0.93654 1.21173 0.99529 1.40154 0.94257 0.92758 1.24949 0.98240 0.95314 0.95366 1.69818 1.23833 1.42662 1.16831 0.86676 0.80924 0.78493 0.82025 1.20289 1.21279 1.20332 1.22001 0.96787 1.00754 0.96559 1.21699 0.96996 0.94500 0.87944 1.22196 1.02473 0.99828 0.92959 1.22108 0.98233 0.82172 0.94726 0.91810 1.21759 1.02080 1.00441 0.95858 1.87961 1.73860 1.24457 1.43174 0.91747 0.91835 0.91261 0.89914 0.90596 0.88496 0.91915 0.91451 0.94263 0.87744 0.95465 0.92907 0.92998 0.92181 0.90392 0.92258 0.90226 0.90522 0.91857 0.90952 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 8.65 37.16 0.32 -1.49 16 2 C 0.09 0.96 3.91 -26.68 -0.10 0.85 16 3 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 4 C -0.13 -1.65 4.48 -26.59 -0.12 -1.76 16 5 C -0.11 -1.50 1.46 -91.59 -0.13 -1.63 16 6 C 0.52 8.93 6.84 -10.99 -0.08 8.85 16 7 O -0.56 -11.25 15.42 5.56 0.09 -11.17 16 8 N -0.60 -10.60 2.97 -172.50 -0.51 -11.11 16 9 C 0.10 1.74 6.00 -3.49 -0.02 1.72 16 10 C -0.12 -2.66 5.17 -26.38 -0.14 -2.80 16 11 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 12 C -0.51 -13.52 8.56 -34.44 -0.29 -13.82 16 13 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -24.04 11.30 55.43 0.63 -23.41 16 16 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 21 C 0.11 2.03 6.44 -3.70 -0.02 2.00 16 22 C -0.14 -1.63 4.67 -26.49 -0.12 -1.76 16 23 C 0.09 0.91 2.94 -26.58 -0.08 0.83 16 24 H 0.06 0.64 6.34 -51.93 -0.33 0.31 16 25 C -0.14 -1.29 9.56 37.16 0.36 -0.94 16 26 O -0.38 -4.50 10.24 -35.23 -0.36 -4.86 16 27 H 0.06 0.64 4.97 -51.93 -0.26 0.38 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.17 7.78 -51.93 -0.40 0.76 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.25 4.71 -51.93 -0.24 1.01 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.99 5.42 -51.93 -0.28 0.71 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 2.49 6.03 -51.93 -0.31 2.18 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.44 7.00 -51.93 -0.36 1.07 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.08 0.91 7.81 -51.93 -0.41 0.50 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -28.95 352.23 -8.79 -37.74 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.06 Total: 1.98 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -0.86 Total: -10.07 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.11 Total: -34.52 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.27 Total: -16.03 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.95 -8.79 -37.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334966237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.025 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds