Wall clock time and date at job start Tue Mar 31 2020 07:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.48260 * 2 1 4 4 C 1.53099 * 109.48241 * 239.97811 * 2 1 3 5 5 C 1.53180 * 109.15864 * 297.62624 * 4 2 1 6 6 C 1.50694 * 109.53947 * 183.06162 * 5 4 2 7 7 O 1.21277 * 120.00334 * 22.05334 * 6 5 4 8 8 N 1.34777 * 119.99790 * 202.05306 * 6 5 4 9 9 C 1.46929 * 120.63323 * 4.04069 * 8 6 5 10 10 C 1.53619 * 108.54410 * 126.36442 * 9 8 6 11 11 C 1.53048 * 109.24175 * 54.86074 * 10 9 8 12 12 C 1.50692 * 109.46151 * 178.48820 * 11 10 9 13 13 H 1.08000 * 120.00389 * 120.06712 * 12 11 10 14 14 C 1.37880 * 120.00088 * 300.06569 * 12 11 10 15 15 N 1.31518 * 120.00095 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00106 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47067 * 60.00472 * 16 14 12 18 18 H 1.48501 * 109.47234 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47346 * 300.00339 * 16 14 12 20 20 C 1.53035 * 109.53397 * 298.50898 * 11 10 9 21 21 C 1.46935 * 120.63034 * 184.31937 * 8 6 5 22 22 C 1.53176 * 109.10804 * 302.97255 * 5 4 2 23 23 C 1.53285 * 109.06449 * 56.94670 * 22 5 4 24 24 H 1.09001 * 109.46853 * 62.44450 * 23 22 5 25 25 C 1.52998 * 109.45371 * 182.44822 * 23 22 5 26 26 O 1.42898 * 109.45529 * 302.43976 * 23 22 5 27 27 H 1.08996 * 109.47086 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46955 * 300.02434 * 1 2 3 29 29 H 1.08997 * 109.47381 * 60.02125 * 1 2 3 30 30 H 1.08998 * 109.52478 * 177.72312 * 4 2 1 31 31 H 1.08998 * 109.57064 * 57.55875 * 4 2 1 32 32 H 1.08997 * 109.54295 * 62.88426 * 5 4 2 33 33 H 1.09004 * 109.58394 * 246.20462 * 9 8 6 34 34 H 1.09004 * 109.58275 * 6.62367 * 9 8 6 35 35 H 1.08991 * 109.64092 * 294.86927 * 10 9 8 36 36 H 1.09001 * 109.45790 * 174.73597 * 10 9 8 37 37 H 1.09004 * 109.45917 * 58.52658 * 11 10 9 38 38 H 0.96994 * 120.00244 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.50216 * 301.40946 * 20 11 10 40 40 H 1.09004 * 109.52415 * 181.33039 * 20 11 10 41 41 H 1.08998 * 109.58569 * 353.37236 * 21 8 6 42 42 H 1.08998 * 109.58509 * 113.79988 * 21 8 6 43 43 H 1.09001 * 109.51845 * 176.93272 * 22 5 4 44 44 H 1.08992 * 109.52402 * 297.11651 * 22 5 4 45 45 H 1.09007 * 109.46601 * 179.97438 * 25 23 22 46 46 H 1.09002 * 109.47257 * 299.97593 * 25 23 22 47 47 H 1.08995 * 109.47751 * 59.98238 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7221 -1.2497 5 6 1.5757 -2.1812 -1.2124 6 6 2.1363 -2.9194 -2.4005 7 8 3.1232 -2.4981 -2.9657 8 7 1.5410 -4.0477 -2.8351 9 6 0.2953 -4.5226 -2.2173 10 6 -0.7505 -4.7298 -3.3234 11 6 -0.1793 -5.6694 -4.3879 12 6 -1.2149 -5.9056 -5.4568 13 1 -1.0065 -5.6319 -6.4806 14 6 -2.4285 -6.4714 -5.1280 15 7 -2.6826 -6.8044 -3.8813 16 14 -3.7125 -6.7635 -6.4529 17 1 -3.1594 -7.6762 -7.4855 18 1 -4.9199 -7.3784 -5.8451 19 1 -4.0787 -5.4689 -7.0814 20 6 1.0651 -5.0365 -5.0146 21 6 2.1286 -4.8297 -3.9315 22 6 2.0766 -2.8342 0.0796 23 6 1.5645 -2.0285 1.2789 24 1 0.4749 -2.0551 1.2958 25 6 2.1099 -2.6375 2.5721 26 8 2.0066 -0.6743 1.1663 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5142 0.8898 29 1 -0.3634 0.5135 -0.8901 30 1 3.1298 -0.6873 -1.2710 31 1 1.6430 -0.2358 -2.1405 32 1 0.4867 -2.2178 -1.2410 33 1 0.4791 -5.4659 -1.7029 34 1 -0.0657 -3.7802 -1.5056 35 1 -0.9967 -3.7708 -3.7790 36 1 -1.6503 -5.1706 -2.8943 37 1 0.0897 -6.6198 -3.9268 38 1 -3.5364 -7.2020 -3.6498 39 1 0.8018 -4.0744 -5.4544 40 1 1.4581 -5.6951 -5.7891 41 1 2.9775 -4.2899 -4.3512 42 1 2.4587 -5.7975 -3.5540 43 1 1.7038 -3.8567 0.1391 44 1 3.1664 -2.8420 0.0850 45 1 1.7463 -2.0645 3.4251 46 1 1.7726 -3.6705 2.6579 47 1 3.1994 -2.6113 2.5549 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334966237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:20 Heat of formation + Delta-G solvation = -120.303920 kcal Electronic energy + Delta-G solvation = -25506.071117 eV Core-core repulsion = 22073.075430 eV Total energy + Delta-G solvation = -3432.995687 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78637 -40.21317 -38.39816 -35.40639 -34.82207 -34.29664 -32.93250 -31.71508 -30.42140 -28.12282 -27.58877 -25.71993 -24.34988 -23.85631 -23.26868 -21.47621 -20.32839 -19.71038 -18.66116 -18.00042 -17.38054 -17.14967 -16.64587 -16.49505 -16.21714 -15.46958 -15.30107 -14.94833 -14.89709 -14.59148 -14.44068 -14.19054 -13.88734 -13.78119 -13.51253 -13.25597 -13.08841 -12.94239 -12.82673 -12.77754 -12.68958 -12.49686 -12.31029 -12.14665 -12.00882 -11.89713 -11.75341 -11.49578 -11.18672 -11.02289 -10.91173 -10.75431 -10.41454 -10.25479 -9.56682 -8.08366 -6.21370 1.42505 1.43458 1.50479 1.57310 2.04568 2.43923 2.82916 3.18218 3.40182 3.62864 3.71781 3.87640 3.94670 4.12161 4.20661 4.24037 4.31529 4.34129 4.39644 4.44998 4.47126 4.50875 4.55824 4.60761 4.69951 4.78247 4.83807 4.84731 4.95815 4.98082 5.00510 5.11764 5.12638 5.17404 5.18356 5.24720 5.33218 5.38996 5.42352 5.54097 5.64455 5.97847 6.12372 6.34076 6.38754 6.49137 6.87246 7.14782 7.46291 8.94890 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.003908 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.588693 B = 7163.030107 C = 7552.836898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.091 3.909 3 H 0.117 0.883 4 C -0.127 4.127 5 C -0.105 4.105 6 C 0.514 3.486 7 O -0.589 6.589 8 N -0.602 5.602 9 C 0.113 3.887 10 C -0.115 4.115 11 C 0.046 3.954 12 C -0.538 4.538 13 H 0.045 0.955 14 C 0.021 3.979 15 N -0.910 5.910 16 Si 0.946 3.054 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.276 1.276 20 C -0.113 4.113 21 C 0.115 3.885 22 C -0.132 4.132 23 C 0.084 3.916 24 H 0.076 0.924 25 C -0.143 4.143 26 O -0.388 6.388 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.027 0.973 36 H 0.082 0.918 37 H 0.005 0.995 38 H 0.262 0.738 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.410 9.634 12.470 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.034 3.966 3 H 0.135 0.865 4 C -0.165 4.165 5 C -0.126 4.126 6 C 0.304 3.696 7 O -0.470 6.470 8 N -0.333 5.333 9 C -0.009 4.009 10 C -0.154 4.154 11 C 0.027 3.973 12 C -0.576 4.576 13 H 0.063 0.937 14 C -0.178 4.178 15 N -0.549 5.549 16 Si 0.773 3.227 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.201 1.201 20 C -0.151 4.151 21 C -0.007 4.007 22 C -0.170 4.170 23 C 0.027 3.973 24 H 0.094 0.906 25 C -0.200 4.200 26 O -0.308 6.308 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.045 0.955 36 H 0.100 0.900 37 H 0.023 0.977 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.105 0.895 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.891 9.832 12.417 16.898 hybrid contribution -0.912 -0.608 -1.467 1.831 sum 4.978 9.224 10.950 15.159 Atomic orbital electron populations 1.22469 0.95161 1.03073 1.03652 1.22241 0.94344 0.96527 0.83482 0.86524 1.22019 1.01760 0.93313 0.99457 1.21445 1.02345 0.96009 0.92828 1.21100 0.83162 0.80125 0.85258 1.90610 1.28699 1.67739 1.59987 1.48307 1.25463 1.24413 1.35122 1.22077 0.82924 1.00095 0.95777 1.21873 0.99005 0.98067 0.96432 1.18600 0.91584 0.93399 0.93673 1.21509 1.00760 1.40679 0.94656 0.93664 1.25585 0.99841 0.95159 0.97201 1.69920 1.24199 1.42813 1.17974 0.85796 0.78827 0.78316 0.79787 1.20109 1.20683 1.20116 1.21846 0.96308 0.99749 0.97206 1.21588 0.96096 0.95308 0.87726 1.22201 1.01692 1.00484 0.92645 1.22229 0.98918 0.81475 0.94694 0.90635 1.21779 1.01729 1.01288 0.95185 1.87960 1.74305 1.25083 1.43417 0.91997 0.90793 0.90656 0.91814 0.90829 0.87362 0.91141 0.88307 0.95456 0.89958 0.97694 0.92836 0.94226 0.91934 0.90455 0.91038 0.89327 0.91834 0.91114 0.89544 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 8.65 71.98 0.62 -2.45 16 2 C 0.09 1.78 3.91 30.63 0.12 1.90 16 3 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 4 C -0.13 -3.08 4.48 30.69 0.14 -2.94 16 5 C -0.11 -2.68 1.46 -11.42 -0.02 -2.69 16 6 C 0.51 17.26 6.84 87.66 0.60 17.86 16 7 O -0.59 -23.63 15.42 -3.02 -0.05 -23.68 16 8 N -0.60 -20.67 2.97 -818.04 -2.43 -23.09 16 9 C 0.11 3.72 6.00 86.51 0.52 4.24 16 10 C -0.12 -4.93 5.17 30.82 0.16 -4.77 16 11 C 0.05 2.18 2.06 -11.51 -0.02 2.15 16 12 C -0.54 -28.71 8.56 25.60 0.22 -28.49 16 13 H 0.05 2.43 7.74 -2.91 -0.02 2.40 16 14 C 0.02 1.13 5.30 84.65 0.45 1.58 16 15 N -0.91 -49.08 11.30 21.45 0.24 -48.83 16 16 Si 0.95 42.19 29.54 68.60 2.03 44.22 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 C -0.11 -4.64 5.30 30.67 0.16 -4.48 16 21 C 0.12 4.17 6.44 86.36 0.56 4.72 16 22 C -0.13 -2.90 4.67 30.75 0.14 -2.76 16 23 C 0.08 1.59 2.94 30.69 0.09 1.68 16 24 H 0.08 1.27 6.34 -2.39 -0.02 1.26 16 25 C -0.14 -2.21 9.56 71.98 0.69 -1.52 16 26 O -0.39 -8.48 10.24 -148.98 -1.53 -10.00 16 27 H 0.06 1.05 4.97 -2.39 -0.01 1.04 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.78 7.78 -2.39 -0.02 1.76 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.11 2.52 4.71 -2.39 -0.01 2.50 16 33 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.10 2.64 5.42 -2.38 -0.01 2.63 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 3.93 6.03 -2.39 -0.01 3.91 16 37 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 38 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.08 2.83 7.00 -2.39 -0.02 2.81 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.09 1.78 7.81 -2.39 -0.02 1.77 16 44 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -61.88 352.23 3.63 -58.25 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.94 Total: 19.12 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 4.43 Total: -15.97 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -2.18 Total: -71.93 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -1.57 Total: -33.68 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -61.88 3.63 -58.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334966237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.057 kcal (2) G-P(sol) polarization free energy of solvation -61.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds