Wall clock time and date at job start Tue Mar 31 2020 07:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.52483 * 2 1 4 4 C 1.53089 * 109.52558 * 120.19285 * 2 1 3 5 5 O 1.42898 * 109.42095 * 177.51651 * 4 2 1 6 6 C 1.42900 * 114.09796 * 298.84202 * 5 4 2 7 7 C 1.53093 * 109.41581 * 61.15237 * 6 5 4 8 8 C 1.53173 * 109.16686 * 302.39567 * 7 6 5 9 9 H 1.09002 * 109.62185 * 176.88815 * 8 7 6 10 10 C 1.50698 * 109.54232 * 297.11346 * 8 7 6 11 11 O 1.21283 * 120.00305 * 105.13036 * 10 8 7 12 12 N 1.34781 * 119.99786 * 285.12618 * 10 8 7 13 13 C 1.46918 * 120.63092 * 355.01533 * 12 10 8 14 14 C 1.53199 * 108.77425 * 233.58169 * 13 12 10 15 15 C 1.53037 * 109.31149 * 305.36438 * 14 13 12 16 16 C 1.52996 * 109.45764 * 181.38417 * 15 14 13 17 17 C 1.50709 * 109.47058 * 175.00240 * 16 15 14 18 18 H 1.07998 * 119.99736 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99695 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99601 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00507 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46876 * 89.99760 * 21 19 17 23 23 H 1.48493 * 109.47062 * 210.00293 * 21 19 17 24 24 H 1.48497 * 109.46581 * 330.00099 * 21 19 17 25 25 C 1.53042 * 109.53905 * 61.36450 * 15 14 13 26 26 C 1.46928 * 120.62665 * 174.98506 * 12 10 8 27 27 H 1.09005 * 109.47237 * 180.12003 * 1 2 3 28 28 H 1.08997 * 109.47154 * 300.12568 * 1 2 3 29 29 H 1.08996 * 109.47241 * 60.12425 * 1 2 3 30 30 H 1.09006 * 109.47747 * 297.49883 * 4 2 1 31 31 H 1.08995 * 109.48409 * 57.52768 * 4 2 1 32 32 H 1.08997 * 109.48794 * 181.13776 * 6 5 4 33 33 H 1.09003 * 109.48054 * 301.17860 * 6 5 4 34 34 H 1.09007 * 109.52416 * 182.48677 * 7 6 5 35 35 H 1.09006 * 109.52374 * 62.30175 * 7 6 5 36 36 H 1.09002 * 109.58667 * 113.79661 * 13 12 10 37 37 H 1.09002 * 109.58877 * 353.36557 * 13 12 10 38 38 H 1.08997 * 109.49726 * 185.40739 * 14 13 12 39 39 H 1.09005 * 109.49533 * 65.31427 * 14 13 12 40 40 H 1.08997 * 109.46424 * 301.35928 * 15 14 13 41 41 H 1.09001 * 109.47392 * 55.00269 * 16 15 14 42 42 H 1.09005 * 109.47440 * 294.99569 * 16 15 14 43 43 H 0.97009 * 120.00215 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.49851 * 58.58208 * 25 15 14 45 45 H 1.08999 * 109.49684 * 178.67975 * 25 15 14 46 46 H 1.08994 * 109.58699 * 246.20359 * 26 12 10 47 47 H 1.08994 * 109.58912 * 6.49327 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0416 -0.7256 1.2471 5 8 3.4694 -0.7750 1.2159 6 6 4.0044 -1.4816 0.0949 7 6 3.5716 -0.7864 -1.1986 8 6 2.0419 -0.7245 -1.2488 9 1 1.7266 -0.1820 -2.1401 10 6 1.4818 -2.1231 -1.2853 11 8 0.9683 -2.5968 -0.2939 12 7 1.5514 -2.8474 -2.4198 13 6 2.0707 -2.2511 -3.6580 14 6 1.0386 -2.4512 -4.7723 15 6 0.6984 -3.9390 -4.8858 16 6 -0.3064 -4.1469 -6.0207 17 6 -0.5483 -5.6219 -6.2135 18 1 -0.0362 -6.3392 -5.5892 19 6 -1.4225 -6.0555 -7.1875 20 7 -1.6332 -7.3427 -7.3561 21 14 -2.3076 -4.8148 -8.2677 22 1 -1.4895 -4.5377 -9.4757 23 1 -3.6244 -5.3656 -8.6773 24 1 -2.5123 -3.5550 -7.5088 25 6 0.0887 -4.4264 -3.5694 26 6 1.1100 -4.2486 -2.4415 27 1 -0.3634 -1.0277 0.0022 28 1 -0.3633 0.5158 0.8888 29 1 -0.3633 0.5119 -0.8911 30 1 1.7159 -0.1898 2.1387 31 1 1.6432 -1.7400 1.2667 32 1 5.0926 -1.4904 0.1562 33 1 3.6315 -2.5059 0.0992 34 1 3.9417 -1.3488 -2.0559 35 1 3.9780 0.2248 -1.2223 36 1 3.0058 -2.7385 -3.9342 37 1 2.2426 -1.1854 -3.5063 38 1 1.4511 -2.0992 -5.7178 39 1 0.1353 -1.8883 -4.5369 40 1 1.6062 -4.5041 -5.0964 41 1 0.0921 -3.7207 -6.9414 42 1 -1.2458 -3.6546 -5.7691 43 1 -2.2480 -7.6479 -8.0416 44 1 -0.8056 -3.8449 -3.3453 45 1 -0.1750 -5.4802 -3.6588 46 1 1.9666 -4.8989 -2.6184 47 1 0.6502 -4.5017 -1.4862 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335384564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:07 Heat of formation + Delta-G solvation = -100.871920 kcal Electronic energy + Delta-G solvation = -25482.428204 eV Core-core repulsion = 22050.275151 eV Total energy + Delta-G solvation = -3432.153052 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.12004 -38.81789 -37.25806 -34.52162 -34.25652 -32.56083 -31.93967 -30.81649 -28.72753 -27.11155 -25.81898 -24.59125 -23.05318 -22.62422 -21.87513 -20.82655 -19.58295 -18.50255 -17.15781 -16.73516 -16.31438 -16.23240 -15.65057 -15.34390 -14.63309 -14.41812 -14.39199 -14.10747 -13.87700 -13.36726 -13.13474 -13.09577 -13.02861 -12.67901 -12.49526 -12.27924 -12.15938 -11.99546 -11.64686 -11.52707 -11.26709 -11.11759 -10.92972 -10.81397 -10.69034 -10.65365 -10.35352 -9.85073 -9.80344 -9.75359 -9.55496 -9.17427 -9.05154 -8.56746 -8.45863 -6.07357 -4.05061 2.59081 3.03480 3.27036 3.35379 3.38104 3.77845 4.29424 4.40068 4.41937 4.51379 4.71941 4.75076 4.98028 5.07199 5.17738 5.21612 5.25445 5.32753 5.34442 5.42306 5.46867 5.50522 5.51939 5.57782 5.64407 5.69366 5.73107 5.81749 5.84688 5.91982 5.97487 6.05607 6.18626 6.22247 6.28758 6.39431 6.52387 6.77842 6.82247 6.96830 7.10048 7.18954 7.38344 7.48782 7.76161 8.20533 8.50155 8.97183 9.55478 11.05890 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.031034 B = 0.003444 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.015817 B = 8127.787282 C = 8209.602620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 H 0.079 0.921 4 C 0.046 3.954 5 O -0.385 6.385 6 C 0.060 3.940 7 C -0.146 4.146 8 C -0.110 4.110 9 H 0.097 0.903 10 C 0.520 3.480 11 O -0.541 6.541 12 N -0.603 5.603 13 C 0.105 3.895 14 C -0.134 4.134 15 C -0.072 4.072 16 C -0.009 4.009 17 C -0.517 4.517 18 H 0.073 0.927 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.267 1.267 25 C -0.118 4.118 26 C 0.108 3.892 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.011 0.989 42 H 0.015 0.985 43 H 0.263 0.737 44 H 0.057 0.943 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.950 15.730 12.320 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.121 4.121 3 H 0.097 0.903 4 C -0.030 4.030 5 O -0.304 6.304 6 C -0.017 4.017 7 C -0.184 4.184 8 C -0.131 4.131 9 H 0.115 0.885 10 C 0.308 3.692 11 O -0.419 6.419 12 N -0.335 5.335 13 C -0.018 4.018 14 C -0.172 4.172 15 C -0.091 4.091 16 C -0.046 4.046 17 C -0.555 4.555 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.191 1.191 25 C -0.156 4.156 26 C -0.014 4.014 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.029 0.971 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.687 15.417 12.870 22.297 hybrid contribution -0.736 0.501 -1.240 1.527 sum 8.950 15.918 11.630 21.651 Atomic orbital electron populations 1.21921 0.94027 1.03961 1.01428 1.21535 0.96908 0.99246 0.94433 0.90279 1.23106 0.80270 1.02946 0.96647 1.87870 1.21146 1.76257 1.45145 1.22527 0.98882 0.94967 0.85318 1.22191 0.93527 1.03026 0.99625 1.21481 0.96621 0.94222 1.00769 0.88461 1.20490 0.78682 0.87274 0.82725 1.90541 1.45174 1.72285 1.33936 1.48216 1.62713 1.13101 1.09511 1.21884 0.97397 0.98101 0.84421 1.22077 0.98500 0.99296 0.97317 1.21002 0.99673 0.92486 0.95897 1.19614 0.94113 0.97899 0.92983 1.21128 1.25578 0.90534 1.18243 0.90854 1.25030 0.96428 0.94954 0.97087 1.69913 1.36808 1.13559 1.33960 0.86808 0.79316 0.82191 0.81122 1.20378 1.21455 1.19126 1.21887 0.97022 1.03499 0.93215 1.21790 0.98308 0.80271 1.01010 0.90349 0.92565 0.92906 0.89645 0.89035 0.88867 0.93085 0.90190 0.89906 0.91295 0.90320 0.91010 0.92003 0.91738 0.97084 0.96719 0.92769 0.92449 0.89274 0.91759 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 8.87 37.15 0.33 -1.32 16 2 C -0.10 -1.05 2.67 -90.48 -0.24 -1.30 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.05 0.54 5.85 37.20 0.22 0.75 16 5 O -0.39 -4.70 10.77 -35.23 -0.38 -5.08 16 6 C 0.06 0.62 6.62 37.21 0.25 0.86 16 7 C -0.15 -1.28 5.40 -26.59 -0.14 -1.42 16 8 C -0.11 -1.12 1.75 -91.59 -0.16 -1.28 16 9 H 0.10 0.88 6.64 -51.93 -0.34 0.54 16 10 C 0.52 6.83 5.17 -10.98 -0.06 6.78 16 11 O -0.54 -8.48 11.01 5.55 0.06 -8.42 16 12 N -0.60 -7.94 2.97 -172.77 -0.51 -8.45 16 13 C 0.10 1.18 5.36 -3.71 -0.02 1.16 16 14 C -0.13 -1.86 5.36 -26.61 -0.14 -2.01 16 15 C -0.07 -1.28 2.10 -90.58 -0.19 -1.47 16 16 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 17 C -0.52 -14.03 8.94 -34.44 -0.31 -14.34 16 18 H 0.07 2.13 7.30 -52.49 -0.38 1.74 16 19 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 20 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 21 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.23 6.54 56.52 0.37 -5.87 16 25 C -0.12 -2.06 5.19 -26.61 -0.14 -2.20 16 26 C 0.11 1.60 6.44 -3.71 -0.02 1.57 16 27 H 0.08 1.02 5.82 -51.93 -0.30 0.72 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.26 5.33 -51.93 -0.28 0.98 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.60 7.36 -51.93 -0.38 0.22 16 34 H 0.08 0.63 6.96 -51.93 -0.36 0.27 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.70 5.27 -51.93 -0.27 0.43 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 42 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.74 6.91 -51.93 -0.36 1.38 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16 LS Contribution 345.02 15.07 5.20 5.20 Total: -1.00 -30.83 345.02 -8.41 -39.23 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.05 Total: 0.15 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.83 Total: -12.72 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.26 Total: -35.02 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.32 Total: -13.50 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.83 -8.41 -39.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.638 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds