Wall clock time and date at job start Tue Mar 31 2020 07:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.52483 * 2 1 4 4 C 1.53089 * 109.52558 * 120.19285 * 2 1 3 5 5 O 1.42898 * 109.42095 * 177.51651 * 4 2 1 6 6 C 1.42900 * 114.09796 * 298.84202 * 5 4 2 7 7 C 1.53093 * 109.41581 * 61.15237 * 6 5 4 8 8 C 1.53173 * 109.16686 * 302.39567 * 7 6 5 9 9 H 1.09002 * 109.62185 * 176.88815 * 8 7 6 10 10 C 1.50698 * 109.54232 * 297.11346 * 8 7 6 11 11 O 1.21283 * 120.00305 * 105.13036 * 10 8 7 12 12 N 1.34781 * 119.99786 * 285.12618 * 10 8 7 13 13 C 1.46918 * 120.63092 * 355.01533 * 12 10 8 14 14 C 1.53199 * 108.77425 * 233.58169 * 13 12 10 15 15 C 1.53037 * 109.31149 * 305.36438 * 14 13 12 16 16 C 1.52996 * 109.45764 * 181.38417 * 15 14 13 17 17 C 1.50709 * 109.47058 * 175.00240 * 16 15 14 18 18 H 1.07998 * 119.99736 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99695 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99601 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00507 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46876 * 89.99760 * 21 19 17 23 23 H 1.48493 * 109.47062 * 210.00293 * 21 19 17 24 24 H 1.48497 * 109.46581 * 330.00099 * 21 19 17 25 25 C 1.53042 * 109.53905 * 61.36450 * 15 14 13 26 26 C 1.46928 * 120.62665 * 174.98506 * 12 10 8 27 27 H 1.09005 * 109.47237 * 180.12003 * 1 2 3 28 28 H 1.08997 * 109.47154 * 300.12568 * 1 2 3 29 29 H 1.08996 * 109.47241 * 60.12425 * 1 2 3 30 30 H 1.09006 * 109.47747 * 297.49883 * 4 2 1 31 31 H 1.08995 * 109.48409 * 57.52768 * 4 2 1 32 32 H 1.08997 * 109.48794 * 181.13776 * 6 5 4 33 33 H 1.09003 * 109.48054 * 301.17860 * 6 5 4 34 34 H 1.09007 * 109.52416 * 182.48677 * 7 6 5 35 35 H 1.09006 * 109.52374 * 62.30175 * 7 6 5 36 36 H 1.09002 * 109.58667 * 113.79661 * 13 12 10 37 37 H 1.09002 * 109.58877 * 353.36557 * 13 12 10 38 38 H 1.08997 * 109.49726 * 185.40739 * 14 13 12 39 39 H 1.09005 * 109.49533 * 65.31427 * 14 13 12 40 40 H 1.08997 * 109.46424 * 301.35928 * 15 14 13 41 41 H 1.09001 * 109.47392 * 55.00269 * 16 15 14 42 42 H 1.09005 * 109.47440 * 294.99569 * 16 15 14 43 43 H 0.97009 * 120.00215 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.49851 * 58.58208 * 25 15 14 45 45 H 1.08999 * 109.49684 * 178.67975 * 25 15 14 46 46 H 1.08994 * 109.58699 * 246.20359 * 26 12 10 47 47 H 1.08994 * 109.58912 * 6.49327 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0416 -0.7256 1.2471 5 8 3.4694 -0.7750 1.2159 6 6 4.0044 -1.4816 0.0949 7 6 3.5716 -0.7864 -1.1986 8 6 2.0419 -0.7245 -1.2488 9 1 1.7266 -0.1820 -2.1401 10 6 1.4818 -2.1231 -1.2853 11 8 0.9683 -2.5968 -0.2939 12 7 1.5514 -2.8474 -2.4198 13 6 2.0707 -2.2511 -3.6580 14 6 1.0386 -2.4512 -4.7723 15 6 0.6984 -3.9390 -4.8858 16 6 -0.3064 -4.1469 -6.0207 17 6 -0.5483 -5.6219 -6.2135 18 1 -0.0362 -6.3392 -5.5892 19 6 -1.4225 -6.0555 -7.1875 20 7 -1.6332 -7.3427 -7.3561 21 14 -2.3076 -4.8148 -8.2677 22 1 -1.4895 -4.5377 -9.4757 23 1 -3.6244 -5.3656 -8.6773 24 1 -2.5123 -3.5550 -7.5088 25 6 0.0887 -4.4264 -3.5694 26 6 1.1100 -4.2486 -2.4415 27 1 -0.3634 -1.0277 0.0022 28 1 -0.3633 0.5158 0.8888 29 1 -0.3633 0.5119 -0.8911 30 1 1.7159 -0.1898 2.1387 31 1 1.6432 -1.7400 1.2667 32 1 5.0926 -1.4904 0.1562 33 1 3.6315 -2.5059 0.0992 34 1 3.9417 -1.3488 -2.0559 35 1 3.9780 0.2248 -1.2223 36 1 3.0058 -2.7385 -3.9342 37 1 2.2426 -1.1854 -3.5063 38 1 1.4511 -2.0992 -5.7178 39 1 0.1353 -1.8883 -4.5369 40 1 1.6062 -4.5041 -5.0964 41 1 0.0921 -3.7207 -6.9414 42 1 -1.2458 -3.6546 -5.7691 43 1 -2.2480 -7.6479 -8.0416 44 1 -0.8056 -3.8449 -3.3453 45 1 -0.1750 -5.4802 -3.6588 46 1 1.9666 -4.8989 -2.6184 47 1 0.6502 -4.5017 -1.4862 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335384564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:07 Heat of formation + Delta-G solvation = -119.859357 kcal Electronic energy + Delta-G solvation = -25483.251561 eV Core-core repulsion = 22050.275151 eV Total energy + Delta-G solvation = -3432.976409 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.06103 -39.86070 -38.39500 -35.78506 -35.35086 -34.18864 -33.07433 -31.94891 -30.35901 -27.98971 -26.86192 -25.95439 -24.22644 -23.58773 -23.06165 -22.04249 -20.89468 -19.61793 -18.80237 -18.08423 -17.17611 -17.11955 -16.63171 -16.37956 -16.30776 -15.49367 -15.36921 -15.28158 -15.11536 -14.83053 -14.48874 -14.21973 -14.09117 -13.97418 -13.69739 -13.34669 -13.13532 -13.05885 -12.91267 -12.80726 -12.49339 -12.37244 -12.13766 -12.05120 -11.97967 -11.72850 -11.58449 -11.47433 -11.30961 -11.14167 -10.94140 -10.72872 -10.64262 -10.05850 -9.57481 -8.26375 -6.28620 1.34934 1.37576 1.48414 1.61322 2.02148 2.37131 2.97832 3.09338 3.43331 3.62204 3.75290 3.85293 3.97366 4.00554 4.03307 4.12534 4.21668 4.32185 4.39046 4.49881 4.51626 4.58992 4.67731 4.68118 4.72478 4.78266 4.82133 4.84634 4.88258 4.95367 4.99662 5.06217 5.09864 5.14015 5.19009 5.21956 5.24378 5.30576 5.42511 5.46087 5.61926 5.71593 5.75159 6.26842 6.33163 6.48689 6.79527 7.20886 7.35395 8.90269 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.031034 B = 0.003444 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.015817 B = 8127.787282 C = 8209.602620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 H 0.101 0.899 4 C 0.046 3.954 5 O -0.399 6.399 6 C 0.053 3.947 7 C -0.139 4.139 8 C -0.106 4.106 9 H 0.122 0.878 10 C 0.515 3.485 11 O -0.572 6.572 12 N -0.606 5.606 13 C 0.106 3.894 14 C -0.127 4.127 15 C -0.069 4.069 16 C -0.007 4.007 17 C -0.519 4.519 18 H 0.035 0.965 19 C 0.000 4.000 20 N -0.954 5.954 21 Si 0.947 3.053 22 H -0.265 1.265 23 H -0.290 1.290 24 H -0.249 1.249 25 C -0.111 4.111 26 C 0.119 3.881 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.027 0.973 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.021 0.979 42 H 0.011 0.989 43 H 0.263 0.737 44 H 0.045 0.955 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.403 19.685 11.556 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.118 4.118 3 H 0.119 0.881 4 C -0.030 4.030 5 O -0.318 6.318 6 C -0.023 4.023 7 C -0.177 4.177 8 C -0.127 4.127 9 H 0.139 0.861 10 C 0.305 3.695 11 O -0.452 6.452 12 N -0.338 5.338 13 C -0.015 4.015 14 C -0.165 4.165 15 C -0.088 4.088 16 C -0.044 4.044 17 C -0.557 4.557 18 H 0.054 0.946 19 C -0.196 4.196 20 N -0.596 5.596 21 Si 0.771 3.229 22 H -0.190 1.190 23 H -0.216 1.216 24 H -0.172 1.172 25 C -0.149 4.149 26 C -0.004 4.004 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.045 0.955 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.163 19.397 12.109 25.446 hybrid contribution -1.178 -0.847 -0.903 1.709 sum 9.986 18.550 11.206 23.862 Atomic orbital electron populations 1.21870 0.94483 1.02207 1.02469 1.21541 0.96463 1.00061 0.93733 0.88095 1.23054 0.80201 1.01737 0.98057 1.87850 1.21242 1.76386 1.46318 1.22684 0.99911 0.93824 0.85905 1.22210 0.92136 1.04346 0.98979 1.21573 0.97620 0.91869 1.01667 0.86070 1.21151 0.78008 0.88346 0.82012 1.90555 1.46401 1.73174 1.35119 1.48282 1.62730 1.12154 1.10597 1.22066 0.96811 1.00354 0.82285 1.22000 0.99492 0.95412 0.99585 1.20921 0.98004 0.95967 0.93907 1.19588 0.95344 0.94274 0.95230 1.21501 1.24493 0.92758 1.16954 0.94625 1.26005 0.97647 0.96908 0.99000 1.70079 1.38245 1.15972 1.35286 0.85704 0.77820 0.79964 0.79411 1.18985 1.21604 1.17219 1.21725 0.97529 1.01016 0.94630 1.21476 0.97683 0.82239 0.98991 0.93403 0.91584 0.91849 0.88812 0.91862 0.86921 0.95504 0.88637 0.87602 0.89632 0.86684 0.89015 0.92256 0.92264 0.96043 0.97095 0.92773 0.93578 0.92826 0.90992 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.87 71.98 0.64 -2.32 16 2 C -0.10 -1.77 2.67 -10.70 -0.03 -1.80 16 3 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 4 C 0.05 1.01 5.85 72.01 0.42 1.43 16 5 O -0.40 -9.07 10.77 -148.98 -1.60 -10.68 16 6 C 0.05 0.98 6.62 72.01 0.48 1.46 16 7 C -0.14 -1.85 5.40 30.68 0.17 -1.69 16 8 C -0.11 -1.80 1.75 -11.42 -0.02 -1.82 16 9 H 0.12 1.52 6.64 -2.39 -0.02 1.51 16 10 C 0.51 12.73 5.17 87.66 0.45 13.18 16 11 O -0.57 -18.17 11.01 -3.04 -0.03 -18.21 16 12 N -0.61 -14.82 2.97 -818.90 -2.43 -17.25 16 13 C 0.11 1.96 5.36 86.37 0.46 2.43 16 14 C -0.13 -3.11 5.36 30.67 0.16 -2.95 16 15 C -0.07 -2.42 2.10 -10.77 -0.02 -2.44 16 16 C -0.01 -0.31 3.52 29.85 0.10 -0.21 16 17 C -0.52 -28.99 8.94 25.60 0.23 -28.76 16 18 H 0.04 2.19 7.30 -2.91 -0.02 2.17 16 19 C 0.00 0.03 5.47 84.65 0.46 0.49 16 20 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 21 Si 0.95 43.84 27.47 68.60 1.88 45.72 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 25 C -0.11 -3.97 5.19 30.67 0.16 -3.81 16 26 C 0.12 3.56 6.44 86.36 0.56 4.11 16 27 H 0.05 1.24 5.82 -2.38 -0.01 1.22 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.06 1.78 5.33 -2.39 -0.01 1.77 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.03 0.62 7.36 -2.39 -0.02 0.60 16 34 H 0.10 1.02 6.96 -2.38 -0.02 1.00 16 35 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.12 1.36 5.27 -2.39 -0.01 1.34 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 42 H 0.01 0.49 7.20 -2.38 -0.02 0.47 16 43 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.05 2.26 6.91 -2.39 -0.02 2.25 16 46 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.07 2.39 7.00 -2.39 -0.02 2.37 16 Total: -1.00 -70.67 345.02 3.22 -67.46 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.88 Total: 15.13 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 4.22 Total: -22.70 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -2.13 Total: -76.73 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -1.64 Total: -28.88 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Total: -70.67 3.22 -67.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.404 kcal (2) G-P(sol) polarization free energy of solvation -70.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds