Wall clock time and date at job start Tue Mar 31 2020 07:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.52377 * 2 1 4 4 C 1.53090 * 109.57631 * 120.16217 * 2 1 3 5 5 O 1.42909 * 109.41616 * 177.54558 * 4 2 1 6 6 C 1.42898 * 114.09545 * 298.84014 * 5 4 2 7 7 C 1.53094 * 109.41705 * 61.15850 * 6 5 4 8 8 C 1.53176 * 109.52177 * 239.87802 * 2 1 3 9 9 H 1.09001 * 109.54537 * 303.00335 * 8 2 1 10 10 C 1.50697 * 109.54465 * 63.18576 * 8 2 1 11 11 O 1.21277 * 120.00292 * 34.49284 * 10 8 2 12 12 N 1.34779 * 120.00183 * 214.49536 * 10 8 2 13 13 C 1.46924 * 120.63477 * 174.41719 * 12 10 8 14 14 C 1.53186 * 108.78023 * 233.63210 * 13 12 10 15 15 C 1.53038 * 109.31442 * 305.36633 * 14 13 12 16 16 C 1.53000 * 109.46064 * 181.38313 * 15 14 13 17 17 C 1.50699 * 109.47012 * 174.99988 * 16 15 14 18 18 H 1.07990 * 120.00238 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99570 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00289 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99669 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47311 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47247 * 239.99918 * 21 19 17 24 24 H 1.48501 * 109.47095 * 119.99931 * 21 19 17 25 25 C 1.53046 * 109.53801 * 61.36436 * 15 14 13 26 26 C 1.46924 * 120.62864 * 354.44759 * 12 10 8 27 27 H 1.09003 * 109.47216 * 180.12082 * 1 2 3 28 28 H 1.09004 * 109.47085 * 300.11878 * 1 2 3 29 29 H 1.09002 * 109.47605 * 60.12438 * 1 2 3 30 30 H 1.09001 * 109.48238 * 297.52695 * 4 2 1 31 31 H 1.09003 * 109.48359 * 57.55295 * 4 2 1 32 32 H 1.08998 * 109.47842 * 181.14165 * 6 5 4 33 33 H 1.09003 * 109.48471 * 301.17651 * 6 5 4 34 34 H 1.09002 * 109.52514 * 182.47725 * 7 6 5 35 35 H 1.09004 * 109.52201 * 62.29543 * 7 6 5 36 36 H 1.09005 * 109.58372 * 113.84289 * 13 12 10 37 37 H 1.09005 * 109.58436 * 353.42508 * 13 12 10 38 38 H 1.08998 * 109.49941 * 185.41190 * 14 13 12 39 39 H 1.09006 * 109.49385 * 65.31743 * 14 13 12 40 40 H 1.08995 * 109.45737 * 301.35895 * 15 14 13 41 41 H 1.09007 * 109.47041 * 54.99775 * 16 15 14 42 42 H 1.09004 * 109.47349 * 295.00266 * 16 15 14 43 43 H 0.96994 * 120.00390 * 0.02562 * 20 19 17 44 44 H 1.08998 * 109.49283 * 58.58400 * 25 15 14 45 45 H 1.08994 * 109.49780 * 178.68110 * 25 15 14 46 46 H 1.09001 * 109.58645 * 246.15526 * 26 12 10 47 47 H 1.09003 * 109.58813 * 6.57815 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0429 -0.7247 1.2471 5 8 3.4708 -0.7728 1.2150 6 6 4.0056 -1.4794 0.0940 7 6 3.5716 -0.7850 -1.1995 8 6 2.0418 -0.7245 -1.2487 9 1 1.6363 -1.7359 -1.2754 10 6 1.6064 0.0259 -2.4810 11 8 1.5358 1.2364 -2.4605 12 7 1.2955 -0.6483 -3.6058 13 6 0.7536 0.0566 -4.7755 14 6 -0.5550 -0.6196 -5.1962 15 6 -0.3035 -2.1120 -5.4227 16 6 -1.6008 -2.7845 -5.8765 17 6 -1.3265 -4.2265 -6.2174 18 1 -0.3270 -4.6238 -6.1198 19 6 -2.3516 -5.0387 -6.6540 20 7 -3.5688 -4.5550 -6.7723 21 14 -2.0115 -6.8260 -7.0773 22 1 -0.5723 -7.1210 -6.8601 23 1 -2.3587 -7.0725 -8.4998 24 1 -2.8332 -7.7057 -6.2076 25 6 0.1745 -2.7543 -4.1184 26 6 1.4914 -2.1022 -3.6855 27 1 -0.3634 -1.0277 0.0022 28 1 -0.3633 0.5157 0.8890 29 1 -0.3634 0.5119 -0.8911 30 1 1.7172 -0.1889 2.1387 31 1 1.6452 -1.7394 1.2673 32 1 5.0939 -1.4872 0.1548 33 1 3.6338 -2.5040 0.0989 34 1 3.9418 -1.3473 -2.0568 35 1 3.9771 0.2265 -1.2237 36 1 1.4700 0.0082 -5.5956 37 1 0.5604 1.0979 -4.5174 38 1 -0.9177 -0.1675 -6.1193 39 1 -1.2997 -0.4912 -4.4106 40 1 0.4594 -2.2392 -6.1907 41 1 -1.9881 -2.2704 -6.7562 42 1 -2.3362 -2.7345 -5.0734 43 1 -3.7454 -3.6269 -6.5529 44 1 -0.5771 -2.6058 -3.3431 45 1 0.3310 -3.8216 -4.2744 46 1 2.2680 -2.3268 -4.4167 47 1 1.7850 -2.4855 -2.7082 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335384565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:11 Heat of formation + Delta-G solvation = -115.508173 kcal Electronic energy + Delta-G solvation = -25241.380020 eV Core-core repulsion = 21808.592292 eV Total energy + Delta-G solvation = -3432.787728 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81062 -39.06071 -37.42431 -34.59481 -34.27314 -32.66413 -32.04900 -30.84885 -28.03895 -27.15078 -26.03248 -24.17786 -23.01474 -22.57644 -22.11902 -20.81597 -19.66551 -18.75283 -17.32976 -16.73089 -16.43176 -16.36585 -15.53441 -15.18805 -14.83715 -14.42490 -14.30187 -13.91753 -13.80344 -13.59613 -13.34727 -13.24227 -13.11330 -12.53577 -12.40224 -12.27145 -12.18481 -11.71229 -11.65398 -11.31953 -11.30316 -11.14009 -10.98974 -10.84026 -10.71342 -10.57445 -10.19876 -10.08542 -10.03235 -9.85432 -9.67308 -9.37194 -8.61743 -8.38572 -8.35398 -6.38482 -4.07907 2.62806 3.03784 3.40128 3.43943 3.56146 3.61052 4.30664 4.39294 4.47614 4.50583 4.63659 4.78629 4.94263 5.07066 5.15612 5.16019 5.27841 5.29892 5.32142 5.37062 5.39279 5.40732 5.41635 5.51033 5.56506 5.61484 5.62950 5.80359 5.82992 5.88158 5.95497 6.04803 6.12924 6.23028 6.25261 6.37298 6.56280 6.78493 6.82833 6.91012 6.91572 7.34559 7.47387 7.51632 8.18283 8.21694 8.43585 8.85828 9.64433 11.01912 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.003628 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.927396 B = 7716.312704 C = 8208.645126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 H 0.091 0.909 4 C 0.067 3.933 5 O -0.382 6.382 6 C 0.063 3.937 7 C -0.144 4.144 8 C -0.109 4.109 9 H 0.095 0.905 10 C 0.523 3.477 11 O -0.548 6.548 12 N -0.605 5.605 13 C 0.113 3.887 14 C -0.130 4.130 15 C -0.073 4.073 16 C 0.014 3.986 17 C -0.598 4.598 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.915 5.915 21 Si 1.071 2.929 22 H -0.289 1.289 23 H -0.288 1.288 24 H -0.288 1.288 25 C -0.118 4.118 26 C 0.100 3.900 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.006 0.994 42 H 0.006 0.994 43 H 0.269 0.731 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.230 6.319 13.039 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 H 0.109 0.891 4 C -0.010 4.010 5 O -0.301 6.301 6 C -0.014 4.014 7 C -0.182 4.182 8 C -0.130 4.130 9 H 0.113 0.887 10 C 0.311 3.689 11 O -0.426 6.426 12 N -0.337 5.337 13 C -0.009 4.009 14 C -0.168 4.168 15 C -0.092 4.092 16 C -0.023 4.023 17 C -0.636 4.636 18 H 0.068 0.932 19 C -0.190 4.190 20 N -0.551 5.551 21 Si 0.900 3.100 22 H -0.215 1.215 23 H -0.214 1.214 24 H -0.214 1.214 25 C -0.157 4.157 26 C -0.022 4.022 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.599 5.646 12.644 18.721 hybrid contribution 0.403 1.155 0.080 1.226 sum 13.001 6.802 12.724 19.422 Atomic orbital electron populations 1.21779 0.94001 1.02105 1.02695 1.21647 0.96723 1.01202 0.93271 0.89070 1.22691 0.80791 0.99771 0.97768 1.87934 1.20449 1.76419 1.45265 1.22574 0.99265 0.94552 0.84965 1.22148 0.93587 1.03200 0.99291 1.21504 0.97208 1.00736 0.93544 0.88658 1.20412 0.76755 0.87759 0.83961 1.90652 1.53875 1.14034 1.84047 1.48198 1.63111 1.08699 1.13739 1.21644 0.95510 0.96942 0.86853 1.22044 0.96037 0.97491 1.01269 1.21046 1.00301 0.91934 0.95905 1.19258 0.91757 0.95995 0.95296 1.22077 0.97041 0.95708 1.48755 0.93156 1.25812 0.93148 1.05612 0.94415 1.70714 1.21109 1.17478 1.45843 0.83512 0.74881 0.74774 0.76819 1.21547 1.21400 1.21421 1.21894 0.94731 1.00984 0.98044 1.22014 0.99393 0.79058 1.01731 0.92475 0.92107 0.91897 0.88509 0.92904 0.88473 0.92812 0.90309 0.90196 0.91845 0.89706 0.91195 0.92190 0.92214 0.97546 0.97592 0.92042 0.92394 0.89565 0.91375 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.99 37.15 0.33 -1.27 16 2 C -0.11 -1.19 2.13 -90.49 -0.19 -1.38 16 3 H 0.09 1.15 7.76 -51.93 -0.40 0.75 16 4 C 0.07 0.62 6.13 37.20 0.23 0.84 16 5 O -0.38 -4.04 10.77 -35.23 -0.38 -4.42 16 6 C 0.06 0.54 6.84 37.21 0.25 0.79 16 7 C -0.14 -1.39 5.40 -26.59 -0.14 -1.53 16 8 C -0.11 -1.22 1.41 -91.59 -0.13 -1.35 16 9 H 0.10 0.98 5.96 -51.93 -0.31 0.67 16 10 C 0.52 7.51 5.73 -10.99 -0.06 7.45 16 11 O -0.55 -9.56 15.31 5.56 0.09 -9.48 16 12 N -0.60 -8.60 2.97 -172.77 -0.51 -9.12 16 13 C 0.11 1.67 6.42 -3.71 -0.02 1.65 16 14 C -0.13 -2.15 5.36 -26.62 -0.14 -2.30 16 15 C -0.07 -1.39 2.10 -90.58 -0.19 -1.58 16 16 C 0.01 0.34 3.76 -27.88 -0.10 0.23 16 17 C -0.60 -16.09 8.39 -34.44 -0.29 -16.38 16 18 H 0.05 1.32 7.05 -52.49 -0.37 0.95 16 19 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 20 N -0.92 -27.57 13.65 55.43 0.76 -26.82 16 21 Si 1.07 24.69 29.90 -169.99 -5.08 19.61 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.12 -1.97 5.19 -26.61 -0.14 -2.11 16 26 C 0.10 1.31 6.31 -3.71 -0.02 1.29 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.83 7.08 -51.93 -0.37 0.46 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.30 7.04 -51.93 -0.37 0.93 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 42 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 43 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.54 6.91 -51.93 -0.36 1.19 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 0.85 5.34 -51.93 -0.28 0.57 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -31.65 357.90 -8.75 -40.41 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.29 Total: -0.22 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.72 Total: -15.35 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.24 Total: -35.93 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.29 Total: -13.90 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.61 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.65 -8.75 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.101 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds