Wall clock time and date at job start Tue Mar 31 2020 07:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.52377 * 2 1 4 4 C 1.53090 * 109.57631 * 120.16217 * 2 1 3 5 5 O 1.42909 * 109.41616 * 177.54558 * 4 2 1 6 6 C 1.42898 * 114.09545 * 298.84014 * 5 4 2 7 7 C 1.53094 * 109.41705 * 61.15850 * 6 5 4 8 8 C 1.53176 * 109.52177 * 239.87802 * 2 1 3 9 9 H 1.09001 * 109.54537 * 303.00335 * 8 2 1 10 10 C 1.50697 * 109.54465 * 63.18576 * 8 2 1 11 11 O 1.21277 * 120.00292 * 34.49284 * 10 8 2 12 12 N 1.34779 * 120.00183 * 214.49536 * 10 8 2 13 13 C 1.46924 * 120.63477 * 174.41719 * 12 10 8 14 14 C 1.53186 * 108.78023 * 233.63210 * 13 12 10 15 15 C 1.53038 * 109.31442 * 305.36633 * 14 13 12 16 16 C 1.53000 * 109.46064 * 181.38313 * 15 14 13 17 17 C 1.50699 * 109.47012 * 174.99988 * 16 15 14 18 18 H 1.07990 * 120.00238 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99570 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00289 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99669 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47311 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47247 * 239.99918 * 21 19 17 24 24 H 1.48501 * 109.47095 * 119.99931 * 21 19 17 25 25 C 1.53046 * 109.53801 * 61.36436 * 15 14 13 26 26 C 1.46924 * 120.62864 * 354.44759 * 12 10 8 27 27 H 1.09003 * 109.47216 * 180.12082 * 1 2 3 28 28 H 1.09004 * 109.47085 * 300.11878 * 1 2 3 29 29 H 1.09002 * 109.47605 * 60.12438 * 1 2 3 30 30 H 1.09001 * 109.48238 * 297.52695 * 4 2 1 31 31 H 1.09003 * 109.48359 * 57.55295 * 4 2 1 32 32 H 1.08998 * 109.47842 * 181.14165 * 6 5 4 33 33 H 1.09003 * 109.48471 * 301.17651 * 6 5 4 34 34 H 1.09002 * 109.52514 * 182.47725 * 7 6 5 35 35 H 1.09004 * 109.52201 * 62.29543 * 7 6 5 36 36 H 1.09005 * 109.58372 * 113.84289 * 13 12 10 37 37 H 1.09005 * 109.58436 * 353.42508 * 13 12 10 38 38 H 1.08998 * 109.49941 * 185.41190 * 14 13 12 39 39 H 1.09006 * 109.49385 * 65.31743 * 14 13 12 40 40 H 1.08995 * 109.45737 * 301.35895 * 15 14 13 41 41 H 1.09007 * 109.47041 * 54.99775 * 16 15 14 42 42 H 1.09004 * 109.47349 * 295.00266 * 16 15 14 43 43 H 0.96994 * 120.00390 * 0.02562 * 20 19 17 44 44 H 1.08998 * 109.49283 * 58.58400 * 25 15 14 45 45 H 1.08994 * 109.49780 * 178.68110 * 25 15 14 46 46 H 1.09001 * 109.58645 * 246.15526 * 26 12 10 47 47 H 1.09003 * 109.58813 * 6.57815 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0429 -0.7247 1.2471 5 8 3.4708 -0.7728 1.2150 6 6 4.0056 -1.4794 0.0940 7 6 3.5716 -0.7850 -1.1995 8 6 2.0418 -0.7245 -1.2487 9 1 1.6363 -1.7359 -1.2754 10 6 1.6064 0.0259 -2.4810 11 8 1.5358 1.2364 -2.4605 12 7 1.2955 -0.6483 -3.6058 13 6 0.7536 0.0566 -4.7755 14 6 -0.5550 -0.6196 -5.1962 15 6 -0.3035 -2.1120 -5.4227 16 6 -1.6008 -2.7845 -5.8765 17 6 -1.3265 -4.2265 -6.2174 18 1 -0.3270 -4.6238 -6.1198 19 6 -2.3516 -5.0387 -6.6540 20 7 -3.5688 -4.5550 -6.7723 21 14 -2.0115 -6.8260 -7.0773 22 1 -0.5723 -7.1210 -6.8601 23 1 -2.3587 -7.0725 -8.4998 24 1 -2.8332 -7.7057 -6.2076 25 6 0.1745 -2.7543 -4.1184 26 6 1.4914 -2.1022 -3.6855 27 1 -0.3634 -1.0277 0.0022 28 1 -0.3633 0.5157 0.8890 29 1 -0.3634 0.5119 -0.8911 30 1 1.7172 -0.1889 2.1387 31 1 1.6452 -1.7394 1.2673 32 1 5.0939 -1.4872 0.1548 33 1 3.6338 -2.5040 0.0989 34 1 3.9418 -1.3473 -2.0568 35 1 3.9771 0.2265 -1.2237 36 1 1.4700 0.0082 -5.5956 37 1 0.5604 1.0979 -4.5174 38 1 -0.9177 -0.1675 -6.1193 39 1 -1.2997 -0.4912 -4.4106 40 1 0.4594 -2.2392 -6.1907 41 1 -1.9881 -2.2704 -6.7562 42 1 -2.3362 -2.7345 -5.0734 43 1 -3.7454 -3.6269 -6.5529 44 1 -0.5771 -2.6058 -3.3431 45 1 0.3310 -3.8216 -4.2744 46 1 2.2680 -2.3268 -4.4167 47 1 1.7850 -2.4855 -2.7082 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335384565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:10 Heat of formation + Delta-G solvation = -134.174277 kcal Electronic energy + Delta-G solvation = -25242.189443 eV Core-core repulsion = 21808.592292 eV Total energy + Delta-G solvation = -3433.597151 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.84430 -40.02295 -38.72010 -35.99491 -35.47271 -34.10890 -33.18467 -32.07671 -29.64234 -28.07059 -27.03011 -25.82070 -24.28996 -23.70244 -23.32374 -21.98413 -20.87780 -19.90626 -18.83220 -18.41074 -17.32602 -17.19197 -16.51978 -16.16792 -15.75155 -15.64634 -15.49066 -15.44149 -15.30692 -15.05867 -14.71806 -14.32070 -14.20769 -13.85843 -13.52541 -13.26385 -13.14263 -13.09658 -13.00930 -12.92017 -12.49437 -12.46145 -12.25610 -11.99554 -11.89969 -11.65085 -11.62628 -11.53045 -11.46876 -11.20600 -10.89807 -10.55015 -10.50909 -10.36142 -9.68605 -8.63398 -6.33440 1.51670 1.54609 1.63692 1.78680 1.93430 2.59244 2.94856 3.20892 3.35526 3.54097 3.67827 3.76125 3.85844 3.90819 3.99520 4.08577 4.10443 4.24618 4.30969 4.41106 4.41833 4.46135 4.56478 4.56986 4.60173 4.70025 4.73522 4.76027 4.78516 4.83462 4.87687 4.97116 5.05358 5.05724 5.10986 5.16291 5.18565 5.25403 5.30636 5.35453 5.53785 5.64639 6.05646 6.24286 6.24430 6.36964 6.62494 7.08944 7.48897 8.76990 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.003628 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.927396 B = 7716.312704 C = 8208.645126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.067 0.933 4 C 0.070 3.930 5 O -0.400 6.400 6 C 0.061 3.939 7 C -0.140 4.140 8 C -0.106 4.106 9 H 0.112 0.888 10 C 0.521 3.479 11 O -0.584 6.584 12 N -0.607 5.607 13 C 0.119 3.881 14 C -0.121 4.121 15 C -0.067 4.067 16 C 0.016 3.984 17 C -0.600 4.600 18 H 0.060 0.940 19 C -0.044 4.044 20 N -0.946 5.946 21 Si 1.120 2.880 22 H -0.262 1.262 23 H -0.285 1.285 24 H -0.283 1.283 25 C -0.113 4.113 26 C 0.109 3.891 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.061 0.939 41 H -0.020 1.020 42 H -0.019 1.019 43 H 0.253 0.747 44 H 0.046 0.954 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.630 4.624 14.138 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.085 0.915 4 C -0.007 4.007 5 O -0.319 6.319 6 C -0.015 4.015 7 C -0.178 4.178 8 C -0.127 4.127 9 H 0.129 0.871 10 C 0.311 3.689 11 O -0.464 6.464 12 N -0.339 5.339 13 C -0.004 4.004 14 C -0.160 4.160 15 C -0.086 4.086 16 C -0.021 4.021 17 C -0.638 4.638 18 H 0.078 0.922 19 C -0.240 4.240 20 N -0.584 5.584 21 Si 0.941 3.059 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.209 1.209 25 C -0.151 4.151 26 C -0.013 4.013 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.080 0.920 41 H -0.002 1.002 42 H -0.001 1.001 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.022 3.959 13.752 20.748 hybrid contribution -0.389 1.755 -0.281 1.819 sum 14.633 5.714 13.472 20.694 Atomic orbital electron populations 1.21745 0.94186 1.02431 1.01899 1.21607 0.96506 1.00195 0.94281 0.91487 1.22728 0.80413 1.00503 0.97038 1.87921 1.20957 1.76933 1.46091 1.22745 1.00303 0.94929 0.83506 1.22152 0.92024 1.02707 1.00895 1.21576 0.98543 1.00804 0.91770 0.87065 1.21011 0.75853 0.87496 0.84578 1.90637 1.55390 1.15835 1.84585 1.48291 1.62841 1.09231 1.13559 1.21518 0.94723 0.96386 0.87755 1.21913 0.96975 0.96148 1.00922 1.20924 0.97320 0.93056 0.97264 1.19205 0.93914 0.95590 0.93408 1.22481 0.97308 0.96706 1.47330 0.92164 1.27382 0.92683 1.09918 0.94043 1.70862 1.22579 1.16720 1.48250 0.82908 0.76347 0.69906 0.76695 1.18662 1.21075 1.20856 1.21782 0.96542 1.00523 0.96267 1.22045 0.97403 0.77833 1.03976 0.91512 0.90724 0.94895 0.87469 0.91282 0.86854 0.90987 0.88648 0.92032 0.90253 0.90373 0.91219 0.93542 0.92026 1.00182 1.00077 0.93748 0.93503 0.90488 0.89589 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.99 71.98 0.65 -2.37 16 2 C -0.11 -2.18 2.13 -10.71 -0.02 -2.20 16 3 H 0.07 1.70 7.76 -2.39 -0.02 1.68 16 4 C 0.07 1.12 6.13 72.01 0.44 1.56 16 5 O -0.40 -7.43 10.77 -148.98 -1.60 -9.03 16 6 C 0.06 0.84 6.84 72.01 0.49 1.33 16 7 C -0.14 -2.31 5.40 30.69 0.17 -2.15 16 8 C -0.11 -2.14 1.41 -11.42 -0.02 -2.16 16 9 H 0.11 1.89 5.96 -2.39 -0.01 1.87 16 10 C 0.52 14.36 5.73 87.66 0.50 14.86 16 11 O -0.58 -20.46 15.31 -3.02 -0.05 -20.50 16 12 N -0.61 -16.23 2.97 -818.91 -2.43 -18.67 16 13 C 0.12 3.42 6.42 86.36 0.55 3.97 16 14 C -0.12 -4.04 5.36 30.67 0.16 -3.87 16 15 C -0.07 -2.52 2.10 -10.77 -0.02 -2.55 16 16 C 0.02 0.79 3.76 29.85 0.11 0.90 16 17 C -0.60 -32.38 8.39 25.60 0.21 -32.17 16 18 H 0.06 3.08 7.05 -2.92 -0.02 3.06 16 19 C -0.04 -2.47 5.46 84.66 0.46 -2.00 16 20 N -0.95 -58.39 13.65 21.45 0.29 -58.10 16 21 Si 1.12 48.80 29.90 68.60 2.05 50.85 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 25 C -0.11 -3.60 5.19 30.67 0.16 -3.44 16 26 C 0.11 2.52 6.31 86.36 0.54 3.06 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.03 0.87 7.08 -2.39 -0.02 0.85 16 30 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.08 2.39 7.04 -2.38 -0.02 2.37 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H -0.02 -1.10 8.01 -2.38 -0.02 -1.12 16 42 H -0.02 -1.04 8.01 -2.38 -0.02 -1.06 16 43 H 0.25 15.94 7.22 -92.71 -0.67 15.27 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.08 2.61 6.91 -2.39 -0.02 2.60 16 46 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.11 1.90 5.34 -2.39 -0.01 1.89 16 Total: -1.00 -70.50 357.90 3.68 -66.82 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 1.02 Total: 15.85 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 4.40 Total: -27.23 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -2.14 Total: -76.76 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.65 Total: -29.54 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.05 Total: 50.85 kcal Total: -70.50 3.68 -66.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.357 kcal (2) G-P(sol) polarization free energy of solvation -70.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds