Wall clock time and date at job start Tue Mar 31 2020 07:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.57567 * 2 1 4 4 C 1.53092 * 109.52097 * 239.85040 * 2 1 3 5 5 O 1.42904 * 109.41917 * 182.48560 * 4 2 1 6 6 C 1.42902 * 114.09335 * 61.15183 * 5 4 2 7 7 C 1.53085 * 109.41946 * 298.84565 * 6 5 4 8 8 C 1.53174 * 109.52474 * 120.16289 * 2 1 3 9 9 H 1.09002 * 109.61799 * 296.79958 * 8 2 1 10 10 C 1.50699 * 109.54209 * 57.01787 * 8 2 1 11 11 O 1.21286 * 120.00190 * 34.44266 * 10 8 2 12 12 N 1.34778 * 119.99898 * 214.16979 * 10 8 2 13 13 C 1.46925 * 120.63364 * 354.67539 * 12 10 8 14 14 C 1.52763 * 109.00862 * 233.58547 * 13 12 10 15 15 C 1.53039 * 109.38166 * 305.58562 * 14 13 12 16 16 C 1.52998 * 109.45878 * 181.26409 * 15 14 13 17 17 C 1.50700 * 109.47393 * 64.92764 * 16 15 14 18 18 H 1.07999 * 119.99763 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00034 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00045 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99956 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47343 * 89.99836 * 21 19 17 23 23 H 1.48499 * 109.47295 * 209.99620 * 21 19 17 24 24 H 1.48502 * 109.47239 * 330.00023 * 21 19 17 25 25 C 1.53034 * 109.53936 * 61.23989 * 15 14 13 26 26 C 1.46928 * 120.63100 * 174.95082 * 12 10 8 27 27 H 1.09006 * 109.46846 * 304.79259 * 1 2 3 28 28 H 1.09003 * 109.47419 * 64.79261 * 1 2 3 29 29 H 1.08991 * 109.47605 * 184.79532 * 1 2 3 30 30 H 1.09002 * 109.48540 * 62.49922 * 4 2 1 31 31 H 1.09007 * 109.47970 * 302.47114 * 4 2 1 32 32 H 1.08999 * 109.47971 * 178.86080 * 6 5 4 33 33 H 1.09007 * 109.48198 * 58.83340 * 6 5 4 34 34 H 1.08998 * 109.52572 * 297.70260 * 7 6 5 35 35 H 1.09001 * 109.57728 * 177.54741 * 7 6 5 36 36 H 1.09002 * 109.58061 * 353.41358 * 13 12 10 37 37 H 1.08992 * 109.58857 * 113.84330 * 13 12 10 38 38 H 1.08995 * 109.56244 * 185.54794 * 14 13 12 39 39 H 1.09005 * 109.35815 * 65.49531 * 14 13 12 40 40 H 1.09005 * 109.44749 * 301.22304 * 15 14 13 41 41 H 1.08996 * 109.47258 * 184.93191 * 16 15 14 42 42 H 1.09004 * 109.46945 * 304.93013 * 16 15 14 43 43 H 0.97001 * 119.99695 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.50099 * 178.68405 * 25 15 14 45 45 H 1.08995 * 109.49786 * 58.58655 * 25 15 14 46 46 H 1.08994 * 109.59023 * 246.15926 * 26 12 10 47 47 H 1.09005 * 109.58568 * 6.58522 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0415 -0.7247 -1.2477 5 8 3.4694 -0.7742 -1.2165 6 6 4.0043 -1.4816 -0.0960 7 6 3.5716 -0.7873 1.1979 8 6 2.0419 -0.7254 1.2482 9 1 1.7279 -0.1841 2.1407 10 6 1.4817 -2.1239 1.2838 11 8 1.3045 -2.7327 0.2499 12 7 1.1829 -2.7003 2.4649 13 6 1.5048 -2.0257 3.7298 14 6 2.3224 -2.9738 4.6052 15 6 1.5642 -4.2928 4.7711 16 6 2.3670 -5.2321 5.6735 17 6 2.4556 -4.6443 7.0583 18 1 1.9859 -3.6959 7.2734 19 6 3.1353 -5.3179 8.0509 20 7 3.2122 -4.8052 9.2596 21 14 3.9471 -6.9587 7.6789 22 1 5.3418 -6.7291 7.2234 23 1 3.9586 -7.7948 8.9061 24 1 3.1864 -7.6566 6.6114 25 6 1.3678 -4.9460 3.4012 26 6 0.5343 -4.0178 2.5121 27 1 -0.3633 0.5864 0.8440 28 1 -0.3634 0.4377 -0.9298 29 1 -0.3634 -1.0240 0.0859 30 1 1.7158 -0.1883 -2.1390 31 1 1.6430 -1.7391 -1.2679 32 1 5.0925 -1.4904 -0.1574 33 1 3.6315 -2.5059 -0.1011 34 1 3.9780 0.2238 1.2223 35 1 3.9417 -1.3493 2.0554 36 1 2.0856 -1.1260 3.5265 37 1 0.5830 -1.7591 4.2467 38 1 2.4824 -2.5205 5.5835 39 1 3.2848 -3.1645 4.1303 40 1 0.5918 -4.0980 5.2234 41 1 1.8713 -6.2016 5.7213 42 1 3.3706 -5.3568 5.2668 43 1 3.6908 -5.2790 9.9577 44 1 0.8484 -5.8966 3.5225 45 1 2.3392 -5.1183 2.9377 46 1 -0.4682 -3.9170 2.9276 47 1 0.4750 -4.4322 1.5056 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335384566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:13 Heat of formation + Delta-G solvation = -100.718444 kcal Electronic energy + Delta-G solvation = -25551.010021 eV Core-core repulsion = 22118.863624 eV Total energy + Delta-G solvation = -3432.146397 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09220 -38.80911 -37.18939 -34.55879 -34.15540 -32.54406 -32.01315 -30.84677 -28.71404 -27.14815 -25.85254 -24.44928 -23.04211 -22.52122 -22.01194 -20.76481 -19.65107 -18.39039 -17.26793 -16.73581 -16.27862 -16.01287 -15.67561 -15.41705 -14.63573 -14.43605 -14.15054 -14.03151 -13.87191 -13.51108 -13.27540 -13.16497 -12.80707 -12.56225 -12.45754 -12.34333 -12.16586 -12.05062 -11.67798 -11.48578 -11.22817 -11.16732 -10.96449 -10.79023 -10.74806 -10.61319 -10.35112 -9.92735 -9.76986 -9.74001 -9.53471 -9.12009 -8.98217 -8.58194 -8.47979 -6.09125 -4.06824 2.58862 3.03311 3.26915 3.35243 3.38468 3.87263 4.33173 4.41123 4.44794 4.56500 4.77166 4.81501 5.04239 5.15409 5.22842 5.23812 5.27760 5.34057 5.38500 5.40072 5.46263 5.52342 5.55869 5.58697 5.65305 5.67775 5.76879 5.84639 5.86984 5.90612 5.96543 6.00452 6.15484 6.23345 6.25472 6.37168 6.55320 6.73361 6.79334 6.90242 7.18982 7.21361 7.36742 7.48267 7.74921 8.20160 8.48182 8.94922 9.54098 11.04010 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.003632 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.186835 B = 7706.930457 C = 7845.807279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.106 4.106 3 H 0.082 0.918 4 C 0.043 3.957 5 O -0.385 6.385 6 C 0.059 3.941 7 C -0.145 4.145 8 C -0.110 4.110 9 H 0.096 0.904 10 C 0.523 3.477 11 O -0.545 6.545 12 N -0.603 5.603 13 C 0.100 3.900 14 C -0.120 4.120 15 C -0.072 4.072 16 C -0.009 4.009 17 C -0.517 4.517 18 H 0.073 0.927 19 C 0.067 3.933 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.266 1.266 25 C -0.132 4.132 26 C 0.111 3.889 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.016 0.984 42 H 0.010 0.990 43 H 0.263 0.737 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.548 9.191 -17.279 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 H 0.100 0.900 4 C -0.033 4.033 5 O -0.303 6.303 6 C -0.018 4.018 7 C -0.183 4.183 8 C -0.131 4.131 9 H 0.114 0.886 10 C 0.312 3.688 11 O -0.425 6.425 12 N -0.335 5.335 13 C -0.022 4.022 14 C -0.158 4.158 15 C -0.091 4.091 16 C -0.046 4.046 17 C -0.555 4.555 18 H 0.091 0.909 19 C -0.134 4.134 20 N -0.543 5.543 21 Si 0.705 3.295 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.191 1.191 25 C -0.170 4.170 26 C -0.011 4.011 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.468 8.912 -17.766 20.177 hybrid contribution 0.344 -0.915 0.536 1.115 sum -3.124 7.997 -17.231 19.251 Atomic orbital electron populations 1.21812 0.94320 1.02678 1.01889 1.21589 0.96474 0.99656 0.94769 0.90016 1.23176 0.80837 1.03183 0.96139 1.87854 1.20862 1.76257 1.45352 1.22561 0.98706 0.95492 0.85063 1.22135 0.93249 1.03088 0.99811 1.21498 0.96972 0.93984 1.00665 0.88574 1.20517 0.77111 0.88044 0.83128 1.90519 1.54920 1.64967 1.32061 1.48247 1.59408 1.19885 1.05995 1.21924 1.00205 0.95995 0.84068 1.21837 0.97981 0.95989 1.00003 1.21004 0.99603 0.95056 0.93396 1.19615 0.94727 0.94953 0.95343 1.21122 1.34153 1.07591 0.92621 0.90868 1.25022 0.95929 0.97531 0.94966 1.69910 1.43027 1.39173 1.02150 0.86818 0.80177 0.84634 0.77875 1.20380 1.21451 1.19082 1.22052 1.00034 0.98276 0.96630 1.21654 0.95569 0.82513 1.01354 0.92525 0.92231 0.91918 0.89975 0.88447 0.89031 0.92366 0.89892 0.90119 0.90190 0.91347 0.89056 0.92385 0.91713 0.96601 0.97147 0.92765 0.91154 0.92113 0.91714 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.98 37.16 0.33 -1.09 16 2 C -0.11 -1.09 2.67 -90.48 -0.24 -1.33 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.04 0.51 5.82 37.20 0.22 0.72 16 5 O -0.38 -5.03 10.77 -35.23 -0.38 -5.41 16 6 C 0.06 0.69 6.56 37.20 0.24 0.94 16 7 C -0.14 -1.51 5.53 -26.60 -0.15 -1.65 16 8 C -0.11 -1.18 1.81 -91.59 -0.17 -1.35 16 9 H 0.10 0.91 6.21 -51.93 -0.32 0.58 16 10 C 0.52 6.90 4.99 -10.99 -0.05 6.85 16 11 O -0.55 -8.40 10.99 5.55 0.06 -8.34 16 12 N -0.60 -7.99 2.98 -173.03 -0.52 -8.50 16 13 C 0.10 1.26 6.13 -3.93 -0.02 1.24 16 14 C -0.12 -1.92 5.17 -26.83 -0.14 -2.06 16 15 C -0.07 -1.28 2.10 -90.58 -0.19 -1.47 16 16 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 17 C -0.52 -13.82 8.94 -34.44 -0.31 -14.13 16 18 H 0.07 2.08 7.30 -52.49 -0.38 1.69 16 19 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 20 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 21 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 25 C -0.13 -2.01 5.36 -26.61 -0.14 -2.15 16 26 C 0.11 1.51 6.44 -3.71 -0.02 1.49 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.71 6.45 -51.93 -0.34 0.38 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 1.35 5.12 -51.93 -0.27 1.08 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.79 6.65 -51.92 -0.35 0.45 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.08 0.84 5.48 -51.93 -0.28 0.56 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.63 6.91 -51.93 -0.36 1.27 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 42 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -30.34 346.39 -8.43 -38.77 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.08 Total: 0.44 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.84 Total: -12.52 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.26 Total: -34.75 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.32 Total: -13.76 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.34 -8.43 -38.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.946 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds