Wall clock time and date at job start Tue Mar 31 2020 07:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47659 * 2 1 4 4 C 1.53091 * 109.48040 * 239.97851 * 2 1 3 5 5 C 1.53174 * 109.16191 * 182.40534 * 4 2 1 6 6 H 1.09004 * 109.54246 * 176.93704 * 5 4 2 7 7 C 1.50693 * 109.54535 * 297.11472 * 5 4 2 8 8 O 1.21282 * 120.00358 * 6.88177 * 7 5 4 9 9 N 1.34783 * 120.00299 * 186.88014 * 7 5 4 10 10 C 1.46918 * 120.63346 * 184.99009 * 9 7 5 11 11 C 1.52764 * 109.00821 * 233.58698 * 10 9 7 12 12 C 1.53040 * 109.38336 * 305.58357 * 11 10 9 13 13 C 1.52995 * 109.46243 * 181.26049 * 12 11 10 14 14 C 1.50706 * 109.46819 * 64.93860 * 13 12 11 15 15 H 1.07994 * 119.99939 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31503 * 120.00398 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99377 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47174 * 60.00115 * 18 16 14 20 20 H 1.48505 * 109.46972 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47389 * 299.99935 * 18 16 14 22 22 C 1.53048 * 109.53420 * 61.23939 * 12 11 10 23 23 C 1.46932 * 120.62642 * 5.26950 * 9 7 5 24 24 C 1.53180 * 109.03467 * 56.98537 * 5 4 2 25 25 C 1.53092 * 109.16217 * 303.01477 * 24 5 4 26 26 O 1.42902 * 109.47917 * 120.02749 * 2 1 3 27 27 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47020 * 299.99560 * 1 2 3 29 29 H 1.08998 * 109.47248 * 60.00140 * 1 2 3 30 30 H 1.08995 * 109.52398 * 302.31721 * 4 2 1 31 31 H 1.09005 * 109.52366 * 62.43798 * 4 2 1 32 32 H 1.09003 * 109.58716 * 353.41939 * 10 9 7 33 33 H 1.08996 * 109.58682 * 113.84396 * 10 9 7 34 34 H 1.09003 * 109.56375 * 185.55377 * 11 10 9 35 35 H 1.08992 * 109.38763 * 65.51513 * 11 10 9 36 36 H 1.09005 * 109.45300 * 301.23632 * 12 11 10 37 37 H 1.09001 * 109.47038 * 184.93680 * 13 12 11 38 38 H 1.08996 * 109.47162 * 304.93368 * 13 12 11 39 39 H 0.96997 * 120.00308 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.49400 * 178.68128 * 22 12 11 41 41 H 1.09004 * 109.51930 * 58.60980 * 22 12 11 42 42 H 1.08995 * 109.58315 * 246.15736 * 23 9 7 43 43 H 1.08996 * 109.58537 * 6.43949 * 23 9 7 44 44 H 1.08996 * 109.52350 * 62.92078 * 24 5 4 45 45 H 1.09000 * 109.51958 * 183.11120 * 24 5 4 46 46 H 1.09000 * 109.48013 * 177.59355 * 25 24 5 47 47 H 1.09006 * 109.48160 * 297.61985 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 3.5711 -0.7706 -1.2123 6 1 3.9392 -1.3310 -2.0717 7 6 4.1211 0.6318 -1.2517 8 8 3.3690 1.5804 -1.1785 9 7 5.4488 0.8320 -1.3682 10 6 6.0104 2.1878 -1.2986 11 6 6.8708 2.4342 -2.5366 12 6 7.9185 1.3250 -2.6560 13 6 8.8013 1.5870 -3.8777 14 6 9.5852 2.8569 -3.6679 15 1 9.4653 3.4208 -2.7547 16 6 10.4555 3.2986 -4.6419 17 7 10.6018 2.6117 -5.7536 18 14 11.4266 4.8731 -4.3821 19 1 12.2798 4.7349 -3.1746 20 1 12.2846 5.1267 -5.5674 21 1 10.4880 6.0089 -4.1977 22 6 7.2174 -0.0263 -2.8139 23 6 6.3615 -0.3011 -1.5734 24 6 4.0176 -1.4601 0.0807 25 6 3.4307 -0.7095 1.2790 26 8 2.0065 -0.6742 1.1664 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6443 -1.7372 -1.2712 31 1 1.7139 -0.1847 -2.1400 32 1 5.2011 2.9174 -1.2667 33 1 6.6262 2.2828 -0.4043 34 1 7.3708 3.3987 -2.4477 35 1 6.2373 2.4333 -3.4236 36 1 8.5360 1.3108 -1.7579 37 1 9.4900 0.7532 -4.0139 38 1 8.1747 1.6889 -4.7637 39 1 11.2138 2.9226 -6.4390 40 1 7.9640 -0.8130 -2.9223 41 1 6.5804 -0.0050 -3.6981 42 1 7.0064 -0.4132 -0.7019 43 1 5.7838 -1.2136 -1.7203 44 1 3.6613 -2.4901 0.0860 45 1 5.1058 -1.4498 0.1418 46 1 3.7100 -1.2206 2.2003 47 1 3.8194 0.3088 1.2959 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335500226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:12 Heat of formation + Delta-G solvation = -107.787457 kcal Electronic energy + Delta-G solvation = -25187.311521 eV Core-core repulsion = 21754.858589 eV Total energy + Delta-G solvation = -3432.452933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95573 -38.81753 -37.21674 -34.40636 -33.69967 -32.84940 -32.02800 -30.76552 -28.27530 -27.95456 -25.19093 -24.52136 -23.00228 -22.65032 -21.87409 -20.94549 -19.61532 -18.46099 -16.90193 -16.41954 -16.36988 -16.19346 -15.68733 -15.33982 -14.56767 -14.52856 -14.21087 -14.08524 -13.64608 -13.34794 -13.25585 -12.91873 -12.72057 -12.54569 -12.46148 -12.24876 -12.07054 -12.05523 -11.73523 -11.26038 -11.21514 -11.07266 -10.91162 -10.78655 -10.71480 -10.57956 -10.45626 -10.18846 -9.79294 -9.68586 -9.32715 -9.19494 -8.99567 -8.40705 -8.36998 -6.02823 -4.04908 2.63050 3.08030 3.30747 3.35727 3.37698 3.67846 4.33994 4.43075 4.44867 4.58012 4.76309 4.79738 5.01723 5.08556 5.25106 5.27303 5.32079 5.35411 5.38314 5.42340 5.45823 5.54638 5.55667 5.57328 5.66407 5.74388 5.75791 5.81137 5.84696 5.92054 6.01083 6.03966 6.14551 6.29830 6.33232 6.48784 6.61291 6.93778 6.97300 7.07413 7.16946 7.51619 7.62236 7.76859 7.96303 8.22710 8.38877 9.01233 9.59125 11.08436 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.035267 B = 0.003137 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.759328 B = 8922.578862 C = 9122.130333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.092 0.908 4 C -0.126 4.126 5 C -0.113 4.113 6 H 0.100 0.900 7 C 0.517 3.483 8 O -0.545 6.545 9 N -0.602 5.602 10 C 0.108 3.892 11 C -0.118 4.118 12 C -0.080 4.080 13 C 0.029 3.971 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.131 4.131 23 C 0.104 3.896 24 C -0.149 4.149 25 C 0.062 3.938 26 O -0.384 6.384 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.261 0.739 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.955 -9.741 11.393 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.134 4.134 6 H 0.118 0.882 7 C 0.305 3.695 8 O -0.424 6.424 9 N -0.335 5.335 10 C -0.014 4.014 11 C -0.156 4.156 12 C -0.099 4.099 13 C -0.008 4.008 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.169 4.169 23 C -0.018 4.018 24 C -0.187 4.187 25 C -0.015 4.015 26 O -0.303 6.303 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.112 0.888 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.369 -9.311 11.395 21.278 hybrid contribution 1.065 0.859 -0.357 1.414 sum -14.304 -8.452 11.037 19.947 Atomic orbital electron populations 1.21736 0.93530 1.02268 1.02331 1.22480 0.94684 0.97485 0.83991 0.89060 1.21995 0.92884 1.01646 0.99899 1.21407 0.97455 0.94325 1.00242 0.88231 1.20539 0.81914 0.91129 0.75911 1.90593 1.56977 1.43970 1.50832 1.48180 1.05944 1.08646 1.70721 1.21698 0.97729 0.82753 0.99207 1.21810 0.96820 1.00922 0.96038 1.21192 0.95734 0.91479 1.01501 1.19112 0.93609 0.96621 0.91506 1.21198 1.23380 1.08268 1.02755 0.92649 1.25014 0.97030 0.97088 0.95283 1.69942 1.37245 1.39011 1.07321 0.86702 0.80092 0.83953 0.77519 1.20284 1.21344 1.20237 1.22045 0.98679 0.99769 0.96437 1.21930 0.92463 0.88232 0.99211 1.22266 1.01907 1.00495 0.94007 1.22499 0.81581 0.99578 0.97822 1.87870 1.20446 1.78313 1.43673 0.92343 0.92092 0.91158 0.90751 0.90342 0.89687 0.91923 0.89766 0.92415 0.92341 0.96625 0.96682 0.92967 0.90986 0.91998 0.91424 0.90301 0.89891 0.89940 0.88791 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.56 37.16 0.36 -1.02 16 2 C 0.07 0.84 2.98 -26.68 -0.08 0.76 16 3 H 0.09 1.31 5.56 -51.93 -0.29 1.02 16 4 C -0.13 -1.35 4.58 -26.59 -0.12 -1.47 16 5 C -0.11 -1.21 2.18 -91.59 -0.20 -1.41 16 6 H 0.10 0.94 7.08 -51.93 -0.37 0.57 16 7 C 0.52 7.21 5.74 -10.99 -0.06 7.14 16 8 O -0.55 -9.16 13.06 5.56 0.07 -9.08 16 9 N -0.60 -8.33 2.98 -173.04 -0.52 -8.84 16 10 C 0.11 1.65 6.41 -3.94 -0.03 1.62 16 11 C -0.12 -2.11 5.17 -26.83 -0.14 -2.25 16 12 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 13 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 14 C -0.52 -13.98 8.39 -34.44 -0.29 -14.27 16 15 H 0.06 1.44 7.05 -52.49 -0.37 1.07 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.45 13.28 55.43 0.74 -25.72 16 18 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.13 -1.97 5.36 -26.61 -0.14 -2.12 16 23 C 0.10 1.25 4.97 -3.71 -0.02 1.23 16 24 C -0.15 -1.35 5.29 -26.59 -0.14 -1.49 16 25 C 0.06 0.65 6.62 37.21 0.25 0.90 16 26 O -0.38 -4.73 10.41 -35.23 -0.37 -5.09 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.08 1.36 7.00 -51.93 -0.36 0.99 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.62 6.91 -51.93 -0.36 1.26 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.75 5.09 -51.93 -0.26 0.49 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.67 6.10 -51.93 -0.32 0.36 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.05 0.59 7.38 -51.93 -0.38 0.20 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -30.90 352.42 -9.00 -39.90 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.19 Total: -0.73 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.03 Total: -12.00 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.22 Total: -34.56 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.29 Total: -14.18 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.90 -9.00 -39.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.892 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds