Wall clock time and date at job start Tue Mar 31 2020 07:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47659 * 2 1 4 4 C 1.53091 * 109.48040 * 239.97851 * 2 1 3 5 5 C 1.53174 * 109.16191 * 182.40534 * 4 2 1 6 6 H 1.09004 * 109.54246 * 176.93704 * 5 4 2 7 7 C 1.50693 * 109.54535 * 297.11472 * 5 4 2 8 8 O 1.21282 * 120.00358 * 6.88177 * 7 5 4 9 9 N 1.34783 * 120.00299 * 186.88014 * 7 5 4 10 10 C 1.46918 * 120.63346 * 184.99009 * 9 7 5 11 11 C 1.52764 * 109.00821 * 233.58698 * 10 9 7 12 12 C 1.53040 * 109.38336 * 305.58357 * 11 10 9 13 13 C 1.52995 * 109.46243 * 181.26049 * 12 11 10 14 14 C 1.50706 * 109.46819 * 64.93860 * 13 12 11 15 15 H 1.07994 * 119.99939 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31503 * 120.00398 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99377 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47174 * 60.00115 * 18 16 14 20 20 H 1.48505 * 109.46972 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47389 * 299.99935 * 18 16 14 22 22 C 1.53048 * 109.53420 * 61.23939 * 12 11 10 23 23 C 1.46932 * 120.62642 * 5.26950 * 9 7 5 24 24 C 1.53180 * 109.03467 * 56.98537 * 5 4 2 25 25 C 1.53092 * 109.16217 * 303.01477 * 24 5 4 26 26 O 1.42902 * 109.47917 * 120.02749 * 2 1 3 27 27 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47020 * 299.99560 * 1 2 3 29 29 H 1.08998 * 109.47248 * 60.00140 * 1 2 3 30 30 H 1.08995 * 109.52398 * 302.31721 * 4 2 1 31 31 H 1.09005 * 109.52366 * 62.43798 * 4 2 1 32 32 H 1.09003 * 109.58716 * 353.41939 * 10 9 7 33 33 H 1.08996 * 109.58682 * 113.84396 * 10 9 7 34 34 H 1.09003 * 109.56375 * 185.55377 * 11 10 9 35 35 H 1.08992 * 109.38763 * 65.51513 * 11 10 9 36 36 H 1.09005 * 109.45300 * 301.23632 * 12 11 10 37 37 H 1.09001 * 109.47038 * 184.93680 * 13 12 11 38 38 H 1.08996 * 109.47162 * 304.93368 * 13 12 11 39 39 H 0.96997 * 120.00308 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.49400 * 178.68128 * 22 12 11 41 41 H 1.09004 * 109.51930 * 58.60980 * 22 12 11 42 42 H 1.08995 * 109.58315 * 246.15736 * 23 9 7 43 43 H 1.08996 * 109.58537 * 6.43949 * 23 9 7 44 44 H 1.08996 * 109.52350 * 62.92078 * 24 5 4 45 45 H 1.09000 * 109.51958 * 183.11120 * 24 5 4 46 46 H 1.09000 * 109.48013 * 177.59355 * 25 24 5 47 47 H 1.09006 * 109.48160 * 297.61985 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 3.5711 -0.7706 -1.2123 6 1 3.9392 -1.3310 -2.0717 7 6 4.1211 0.6318 -1.2517 8 8 3.3690 1.5804 -1.1785 9 7 5.4488 0.8320 -1.3682 10 6 6.0104 2.1878 -1.2986 11 6 6.8708 2.4342 -2.5366 12 6 7.9185 1.3250 -2.6560 13 6 8.8013 1.5870 -3.8777 14 6 9.5852 2.8569 -3.6679 15 1 9.4653 3.4208 -2.7547 16 6 10.4555 3.2986 -4.6419 17 7 10.6018 2.6117 -5.7536 18 14 11.4266 4.8731 -4.3821 19 1 12.2798 4.7349 -3.1746 20 1 12.2846 5.1267 -5.5674 21 1 10.4880 6.0089 -4.1977 22 6 7.2174 -0.0263 -2.8139 23 6 6.3615 -0.3011 -1.5734 24 6 4.0176 -1.4601 0.0807 25 6 3.4307 -0.7095 1.2790 26 8 2.0065 -0.6742 1.1664 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6443 -1.7372 -1.2712 31 1 1.7139 -0.1847 -2.1400 32 1 5.2011 2.9174 -1.2667 33 1 6.6262 2.2828 -0.4043 34 1 7.3708 3.3987 -2.4477 35 1 6.2373 2.4333 -3.4236 36 1 8.5360 1.3108 -1.7579 37 1 9.4900 0.7532 -4.0139 38 1 8.1747 1.6889 -4.7637 39 1 11.2138 2.9226 -6.4390 40 1 7.9640 -0.8130 -2.9223 41 1 6.5804 -0.0050 -3.6981 42 1 7.0064 -0.4132 -0.7019 43 1 5.7838 -1.2136 -1.7203 44 1 3.6613 -2.4901 0.0860 45 1 5.1058 -1.4498 0.1418 46 1 3.7100 -1.2206 2.2003 47 1 3.8194 0.3088 1.2959 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335500226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:11 Heat of formation + Delta-G solvation = -125.963989 kcal Electronic energy + Delta-G solvation = -25188.099715 eV Core-core repulsion = 21754.858589 eV Total energy + Delta-G solvation = -3433.241126 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95440 -39.87405 -38.45124 -35.83340 -34.86515 -33.99668 -33.47337 -31.97792 -29.90336 -28.83027 -26.59962 -25.71355 -24.09258 -23.91597 -23.05308 -22.09231 -20.95819 -19.61433 -18.41905 -17.94793 -17.27898 -17.11646 -16.73521 -16.55562 -16.31942 -15.45606 -15.34616 -15.20247 -14.86806 -14.71282 -14.48700 -14.28337 -13.89920 -13.72674 -13.45633 -13.32902 -13.21755 -13.01080 -12.91253 -12.77993 -12.65004 -12.47980 -12.33977 -12.13370 -11.99612 -11.83394 -11.68797 -11.43956 -11.33517 -11.05076 -10.93070 -10.66930 -10.52685 -10.14309 -9.59330 -8.18145 -6.27196 1.39573 1.41431 1.48939 1.58145 2.01475 2.41071 2.87502 3.15504 3.41976 3.65549 3.78925 3.87066 3.98843 4.01570 4.05144 4.13878 4.22562 4.31710 4.40286 4.45184 4.52080 4.56575 4.66013 4.70569 4.72043 4.81521 4.81696 4.84976 4.88335 4.96982 4.99646 5.05842 5.07371 5.11692 5.24918 5.29235 5.32498 5.33160 5.37770 5.54687 5.61137 5.80313 5.89291 6.28563 6.32721 6.45467 6.89499 7.15822 7.41383 8.93396 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.035267 B = 0.003137 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.759328 B = 8922.578862 C = 9122.130333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.060 0.940 4 C -0.125 4.125 5 C -0.111 4.111 6 H 0.122 0.878 7 C 0.512 3.488 8 O -0.580 6.580 9 N -0.605 5.605 10 C 0.118 3.882 11 C -0.109 4.109 12 C -0.073 4.073 13 C 0.033 3.967 14 C -0.531 4.531 15 H 0.062 0.938 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.957 3.043 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.270 1.270 22 C -0.126 4.126 23 C 0.110 3.890 24 C -0.142 4.142 25 C 0.055 3.945 26 O -0.395 6.395 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.064 0.936 37 H -0.007 1.007 38 H -0.018 1.018 39 H 0.261 0.739 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.115 0.885 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.197 -11.361 13.024 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.011 3.989 3 H 0.078 0.922 4 C -0.163 4.163 5 C -0.132 4.132 6 H 0.139 0.861 7 C 0.302 3.698 8 O -0.460 6.460 9 N -0.337 5.337 10 C -0.005 4.005 11 C -0.148 4.148 12 C -0.092 4.092 13 C -0.004 4.004 14 C -0.569 4.569 15 H 0.080 0.920 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.782 3.218 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.195 1.195 22 C -0.165 4.165 23 C -0.012 4.012 24 C -0.179 4.179 25 C -0.021 4.021 26 O -0.315 6.315 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.011 0.989 38 H 0.001 0.999 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.132 0.868 44 H 0.124 0.876 45 H 0.116 0.884 46 H 0.133 0.867 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.611 -10.946 13.042 23.100 hybrid contribution 1.128 1.390 -0.883 1.996 sum -14.484 -9.556 12.159 21.188 Atomic orbital electron populations 1.21734 0.92268 1.03098 1.02525 1.22434 0.95802 0.96026 0.84678 0.92247 1.21991 0.93066 1.02473 0.98721 1.21506 0.97313 0.92196 1.02166 0.86063 1.21226 0.81482 0.92321 0.74817 1.90593 1.57770 1.45514 1.52168 1.48264 1.06433 1.08379 1.70654 1.21453 0.96996 0.83925 0.98096 1.21656 0.96579 0.99807 0.96736 1.21038 0.95348 0.94094 0.98677 1.19008 0.93386 0.95015 0.92945 1.21659 1.23239 1.09111 1.02847 0.91991 1.25917 0.98342 1.00549 0.95050 1.70078 1.38262 1.40944 1.08310 0.85627 0.78676 0.79821 0.77706 1.19048 1.21207 1.19508 1.21963 0.99013 0.97584 0.97897 1.22062 0.92366 0.88606 0.98157 1.22281 1.02746 1.00979 0.91908 1.22665 0.80780 0.98923 0.99753 1.87856 1.21596 1.78122 1.43954 0.91099 0.92387 0.90574 0.88561 0.91273 0.90820 0.90303 0.91688 0.94453 0.91780 0.98885 0.99931 0.92986 0.89891 0.93195 0.89240 0.86833 0.87636 0.88413 0.86716 0.95552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.56 71.98 0.69 -1.87 16 2 C 0.07 1.54 2.98 30.63 0.09 1.64 16 3 H 0.06 1.75 5.56 -2.39 -0.01 1.73 16 4 C -0.12 -2.40 4.58 30.68 0.14 -2.26 16 5 C -0.11 -2.04 2.18 -11.42 -0.02 -2.07 16 6 H 0.12 1.75 7.08 -2.39 -0.02 1.73 16 7 C 0.51 13.55 5.74 87.65 0.50 14.05 16 8 O -0.58 -19.61 13.06 -3.03 -0.04 -19.65 16 9 N -0.61 -15.64 2.98 -819.75 -2.44 -18.08 16 10 C 0.12 3.53 6.41 86.22 0.55 4.08 16 11 C -0.11 -3.98 5.17 30.53 0.16 -3.82 16 12 C -0.07 -2.72 2.10 -10.77 -0.02 -2.75 16 13 C 0.03 1.69 4.45 29.85 0.13 1.82 16 14 C -0.53 -29.15 8.39 25.60 0.21 -28.94 16 15 H 0.06 3.25 7.05 -2.91 -0.02 3.23 16 16 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 17 N -0.94 -56.58 13.28 21.45 0.28 -56.29 16 18 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 C -0.13 -3.61 5.36 30.67 0.16 -3.45 16 23 C 0.11 2.25 4.97 86.36 0.43 2.67 16 24 C -0.14 -2.00 5.29 30.69 0.16 -1.84 16 25 C 0.06 1.03 6.62 72.01 0.48 1.51 16 26 O -0.40 -9.08 10.41 -148.98 -1.55 -10.63 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.45 8.11 -2.38 -0.02 1.43 16 32 H 0.07 2.39 7.00 -2.39 -0.02 2.37 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.57 6.91 -2.39 -0.02 2.56 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 36 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 39 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.11 1.60 5.09 -2.39 -0.01 1.59 16 44 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.10 1.11 6.10 -2.39 -0.01 1.09 16 46 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.03 0.60 7.38 -2.38 -0.02 0.59 16 Total: -1.00 -69.67 352.42 3.34 -66.33 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.93 Total: 13.17 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 4.13 Total: -20.82 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -2.16 Total: -74.38 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.59 Total: -30.28 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -69.67 3.34 -66.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.632 kcal (2) G-P(sol) polarization free energy of solvation -69.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds