Wall clock time and date at job start Tue Mar 31 2020 07:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09010 * 109.48732 * 2 1 4 4 O 1.42903 * 109.48202 * 239.97376 * 2 1 3 5 5 C 1.42903 * 114.09921 * 178.85492 * 4 2 1 6 6 C 1.53095 * 109.41360 * 61.15541 * 5 4 2 7 7 C 1.53176 * 109.16206 * 302.39402 * 6 5 4 8 8 C 1.53083 * 109.48353 * 120.02538 * 2 1 3 9 9 H 1.09005 * 109.57249 * 57.65611 * 8 2 1 10 10 C 1.50693 * 109.52602 * 297.50199 * 8 2 1 11 11 O 1.21289 * 119.99894 * 335.37875 * 10 8 2 12 12 N 1.34780 * 120.00411 * 155.37767 * 10 8 2 13 13 C 1.46993 * 120.61102 * 355.19231 * 12 10 8 14 14 C 1.53194 * 108.73554 * 126.39208 * 13 12 10 15 15 C 1.53036 * 109.34417 * 54.61705 * 14 13 12 16 16 C 1.53005 * 109.46017 * 178.59787 * 15 14 13 17 17 C 1.50700 * 109.46930 * 185.00292 * 16 15 14 18 18 H 1.08001 * 119.99742 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00076 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99423 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00235 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47267 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47542 * 119.99848 * 21 19 17 24 24 H 1.48505 * 109.47080 * 240.00101 * 21 19 17 25 25 C 1.53040 * 109.53895 * 298.62110 * 15 14 13 26 26 C 1.46930 * 120.63255 * 175.16901 * 12 10 8 27 27 H 1.08993 * 109.46694 * 299.96917 * 1 2 3 28 28 H 1.09002 * 109.46902 * 59.97368 * 1 2 3 29 29 H 1.09000 * 109.46581 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.48079 * 301.17501 * 5 4 2 31 31 H 1.08999 * 109.48027 * 181.13568 * 5 4 2 32 32 H 1.08993 * 109.52503 * 182.48359 * 6 5 4 33 33 H 1.09009 * 109.52236 * 62.29508 * 6 5 4 34 34 H 1.08996 * 109.54484 * 297.10914 * 7 6 5 35 35 H 1.09010 * 109.53966 * 176.84887 * 7 6 5 36 36 H 1.08989 * 109.63182 * 6.59741 * 13 12 10 37 37 H 1.08999 * 109.57822 * 246.14430 * 13 12 10 38 38 H 1.09008 * 109.49193 * 294.64733 * 14 13 12 39 39 H 1.09000 * 109.49739 * 174.59274 * 14 13 12 40 40 H 1.09007 * 109.45530 * 58.64183 * 15 14 13 41 41 H 1.08998 * 109.46811 * 304.99956 * 16 15 14 42 42 H 1.08996 * 109.46719 * 65.00042 * 16 15 14 43 43 H 0.96999 * 119.99542 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.49492 * 181.31192 * 25 15 14 45 45 H 1.08997 * 109.49788 * 301.37699 * 25 15 14 46 46 H 1.08996 * 109.58521 * 113.84197 * 26 12 10 47 47 H 1.08997 * 109.58267 * 353.42039 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0277 0.0000 4 8 2.0067 -0.6741 -1.1664 5 6 3.4308 -0.7092 -1.2791 6 6 4.0178 -1.4599 -0.0809 7 6 3.5712 -0.7707 1.2121 8 6 2.0407 -0.7221 1.2495 9 1 1.6444 -1.7374 1.2720 10 6 1.5904 0.0215 2.4804 11 8 1.3360 1.2056 2.4144 12 7 1.4703 -0.6291 3.6546 13 6 1.6728 -2.0831 3.7289 14 6 2.7176 -2.3798 4.8092 15 6 2.2801 -1.7375 6.1276 16 6 3.3043 -2.0617 7.2171 17 6 2.8134 -1.5347 8.5408 18 1 1.8658 -1.0197 8.5991 19 6 3.5743 -1.7090 9.6773 20 7 4.7283 -2.3358 9.6061 21 14 2.9661 -1.0552 11.3179 22 1 1.6492 -0.3950 11.1303 23 1 2.8231 -2.1800 12.2769 24 1 3.9422 -0.0712 11.8512 25 6 2.1861 -0.2202 5.9513 26 6 1.1350 0.1017 4.8845 27 1 -0.3632 0.5133 0.8902 28 1 -0.3633 0.5143 -0.8898 29 1 -0.3632 -1.0277 -0.0005 30 1 3.8193 0.3091 -1.2959 31 1 3.7101 -1.2202 -2.2005 32 1 5.1059 -1.4496 -0.1421 33 1 3.6615 -2.4901 -0.0864 34 1 3.9690 0.2437 1.2408 35 1 3.9394 -1.3325 2.0706 36 1 2.0267 -2.4531 2.7668 37 1 0.7323 -2.5701 3.9866 38 1 3.6808 -1.9690 4.5063 39 1 2.8076 -3.4580 4.9419 40 1 1.3055 -2.1306 6.4171 41 1 3.4358 -3.1418 7.2823 42 1 4.2573 -1.5938 6.9705 43 1 5.2638 -2.4582 10.4056 44 1 1.8970 0.2386 6.8969 45 1 3.1544 0.1703 5.6384 46 1 0.1507 -0.2073 5.2362 47 1 1.1340 1.1731 4.6841 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335502246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:28 Heat of formation + Delta-G solvation = -111.272184 kcal Electronic energy + Delta-G solvation = -25158.621072 eV Core-core repulsion = 21726.017030 eV Total energy + Delta-G solvation = -3432.604042 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77770 -38.98532 -37.31824 -34.28047 -33.74397 -32.91153 -32.09436 -30.78116 -28.54131 -27.75678 -25.25265 -24.46019 -23.05213 -22.47495 -21.81485 -20.82384 -19.68334 -18.59308 -17.41696 -16.53351 -16.26117 -16.03034 -15.39351 -15.29504 -14.83418 -14.55111 -14.28478 -14.08873 -13.65014 -13.32280 -13.09285 -13.03074 -12.89840 -12.70064 -12.37893 -12.26152 -12.11532 -11.90509 -11.56008 -11.27732 -11.25597 -11.11832 -11.04303 -10.78403 -10.73532 -10.55305 -10.44115 -10.20787 -9.77679 -9.68278 -9.48233 -9.29651 -8.98766 -8.40415 -8.36898 -6.03139 -4.04927 2.64041 3.05166 3.28514 3.36672 3.39941 3.59049 4.34763 4.43076 4.46549 4.58404 4.64344 4.81578 4.91044 5.05929 5.12947 5.27202 5.29231 5.32020 5.32231 5.38167 5.49398 5.54400 5.55935 5.58052 5.63591 5.67512 5.76489 5.81585 5.83610 5.94486 6.01334 6.04405 6.07331 6.31553 6.32764 6.48897 6.61611 6.94139 6.97180 7.00997 7.07644 7.52473 7.62783 7.76897 7.96342 8.23336 8.39047 9.01667 9.59258 11.08169 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.029974 B = 0.003315 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.913091 B = 8444.750149 C = 8948.646294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.106 3.894 3 H 0.071 0.929 4 O -0.379 6.379 5 C 0.059 3.941 6 C -0.153 4.153 7 C -0.113 4.113 8 C -0.139 4.139 9 H 0.101 0.899 10 C 0.523 3.477 11 O -0.549 6.549 12 N -0.602 5.602 13 C 0.103 3.897 14 C -0.130 4.130 15 C -0.081 4.081 16 C 0.028 3.972 17 C -0.516 4.516 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.117 4.117 26 C 0.108 3.892 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 0.724 -20.073 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.048 3.952 3 H 0.089 0.911 4 O -0.298 6.298 5 C -0.018 4.018 6 C -0.191 4.191 7 C -0.151 4.151 8 C -0.161 4.161 9 H 0.119 0.881 10 C 0.311 3.689 11 O -0.427 6.427 12 N -0.335 5.335 13 C -0.020 4.020 14 C -0.168 4.168 15 C -0.099 4.099 16 C -0.009 4.009 17 C -0.554 4.554 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.156 4.156 26 C -0.013 4.013 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.103 0.897 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.473 1.213 -20.121 20.648 hybrid contribution 0.110 0.219 1.378 1.399 sum -4.363 1.432 -18.743 19.298 Atomic orbital electron populations 1.21809 0.92747 1.02599 1.03152 1.21846 0.95284 0.95132 0.82944 0.91131 1.87936 1.20976 1.78222 1.42640 1.22593 0.81179 0.99733 0.98303 1.22191 1.01453 1.00584 0.94860 1.21559 0.92551 1.02178 0.98805 1.22027 0.98154 1.01643 0.94247 0.88145 1.20294 0.77063 0.87312 0.84226 1.90665 1.50997 1.15778 1.85268 1.48196 1.68636 1.08654 1.07971 1.21930 1.00002 0.79793 1.00243 1.22037 0.97876 1.01239 0.95646 1.21195 1.00854 0.93647 0.94248 1.19125 0.93348 0.96717 0.91734 1.21274 1.05062 1.36288 0.92784 0.92534 1.25020 0.94979 0.95375 0.99106 1.69974 1.12289 1.42396 1.28852 0.86587 0.78875 0.78693 0.84166 1.19727 1.21083 1.21072 1.21893 0.97924 0.97807 0.97928 1.21793 0.98595 0.97291 0.83664 0.90389 0.91702 0.92132 0.93102 0.88764 0.90304 0.90719 0.91058 0.90364 0.90276 0.91360 0.92030 0.91029 0.92315 0.96611 0.96667 0.93105 0.89742 0.92432 0.91843 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.32 37.16 0.35 -1.24 16 2 C 0.11 1.23 2.42 -26.68 -0.06 1.16 16 3 H 0.07 0.90 7.79 -51.92 -0.40 0.49 16 4 O -0.38 -4.23 10.41 -35.23 -0.37 -4.60 16 5 C 0.06 0.50 6.84 37.21 0.25 0.76 16 6 C -0.15 -1.26 6.14 -26.59 -0.16 -1.43 16 7 C -0.11 -1.17 5.20 -26.55 -0.14 -1.31 16 8 C -0.14 -1.59 1.40 -91.64 -0.13 -1.72 16 9 H 0.10 1.04 6.28 -51.93 -0.33 0.72 16 10 C 0.52 7.49 6.04 -10.99 -0.07 7.43 16 11 O -0.55 -9.46 14.57 5.55 0.08 -9.38 16 12 N -0.60 -8.54 2.97 -172.72 -0.51 -9.06 16 13 C 0.10 1.28 6.27 -3.67 -0.02 1.25 16 14 C -0.13 -1.96 5.36 -26.61 -0.14 -2.10 16 15 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 16 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 17 C -0.52 -13.90 8.39 -34.44 -0.29 -14.19 16 18 H 0.06 1.48 7.05 -52.49 -0.37 1.11 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 21 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C -0.12 -2.10 5.19 -26.61 -0.14 -2.23 16 26 C 0.11 1.67 6.42 -3.71 -0.02 1.65 16 27 H 0.08 0.95 6.66 -51.93 -0.35 0.60 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.82 7.92 -51.92 -0.41 0.41 16 36 H 0.08 0.81 5.20 -51.94 -0.27 0.54 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.08 1.62 6.91 -51.93 -0.36 1.26 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.08 1.36 7.03 -51.93 -0.37 1.00 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -30.77 358.36 -9.00 -39.77 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.33 Total: -1.10 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.99 Total: -11.65 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.22 Total: -34.69 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.29 Total: -13.98 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.77 -9.00 -39.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335502246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.499 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds