Wall clock time and date at job start Tue Mar 31 2020 07:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09010 * 109.48732 * 2 1 4 4 O 1.42903 * 109.48202 * 239.97376 * 2 1 3 5 5 C 1.42903 * 114.09921 * 178.85492 * 4 2 1 6 6 C 1.53095 * 109.41360 * 61.15541 * 5 4 2 7 7 C 1.53176 * 109.16206 * 302.39402 * 6 5 4 8 8 C 1.53083 * 109.48353 * 120.02538 * 2 1 3 9 9 H 1.09005 * 109.57249 * 57.65611 * 8 2 1 10 10 C 1.50693 * 109.52602 * 297.50199 * 8 2 1 11 11 O 1.21289 * 119.99894 * 335.37875 * 10 8 2 12 12 N 1.34780 * 120.00411 * 155.37767 * 10 8 2 13 13 C 1.46993 * 120.61102 * 355.19231 * 12 10 8 14 14 C 1.53194 * 108.73554 * 126.39208 * 13 12 10 15 15 C 1.53036 * 109.34417 * 54.61705 * 14 13 12 16 16 C 1.53005 * 109.46017 * 178.59787 * 15 14 13 17 17 C 1.50700 * 109.46930 * 185.00292 * 16 15 14 18 18 H 1.08001 * 119.99742 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00076 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99423 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00235 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47267 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47542 * 119.99848 * 21 19 17 24 24 H 1.48505 * 109.47080 * 240.00101 * 21 19 17 25 25 C 1.53040 * 109.53895 * 298.62110 * 15 14 13 26 26 C 1.46930 * 120.63255 * 175.16901 * 12 10 8 27 27 H 1.08993 * 109.46694 * 299.96917 * 1 2 3 28 28 H 1.09002 * 109.46902 * 59.97368 * 1 2 3 29 29 H 1.09000 * 109.46581 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.48079 * 301.17501 * 5 4 2 31 31 H 1.08999 * 109.48027 * 181.13568 * 5 4 2 32 32 H 1.08993 * 109.52503 * 182.48359 * 6 5 4 33 33 H 1.09009 * 109.52236 * 62.29508 * 6 5 4 34 34 H 1.08996 * 109.54484 * 297.10914 * 7 6 5 35 35 H 1.09010 * 109.53966 * 176.84887 * 7 6 5 36 36 H 1.08989 * 109.63182 * 6.59741 * 13 12 10 37 37 H 1.08999 * 109.57822 * 246.14430 * 13 12 10 38 38 H 1.09008 * 109.49193 * 294.64733 * 14 13 12 39 39 H 1.09000 * 109.49739 * 174.59274 * 14 13 12 40 40 H 1.09007 * 109.45530 * 58.64183 * 15 14 13 41 41 H 1.08998 * 109.46811 * 304.99956 * 16 15 14 42 42 H 1.08996 * 109.46719 * 65.00042 * 16 15 14 43 43 H 0.96999 * 119.99542 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.49492 * 181.31192 * 25 15 14 45 45 H 1.08997 * 109.49788 * 301.37699 * 25 15 14 46 46 H 1.08996 * 109.58521 * 113.84197 * 26 12 10 47 47 H 1.08997 * 109.58267 * 353.42039 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0277 0.0000 4 8 2.0067 -0.6741 -1.1664 5 6 3.4308 -0.7092 -1.2791 6 6 4.0178 -1.4599 -0.0809 7 6 3.5712 -0.7707 1.2121 8 6 2.0407 -0.7221 1.2495 9 1 1.6444 -1.7374 1.2720 10 6 1.5904 0.0215 2.4804 11 8 1.3360 1.2056 2.4144 12 7 1.4703 -0.6291 3.6546 13 6 1.6728 -2.0831 3.7289 14 6 2.7176 -2.3798 4.8092 15 6 2.2801 -1.7375 6.1276 16 6 3.3043 -2.0617 7.2171 17 6 2.8134 -1.5347 8.5408 18 1 1.8658 -1.0197 8.5991 19 6 3.5743 -1.7090 9.6773 20 7 4.7283 -2.3358 9.6061 21 14 2.9661 -1.0552 11.3179 22 1 1.6492 -0.3950 11.1303 23 1 2.8231 -2.1800 12.2769 24 1 3.9422 -0.0712 11.8512 25 6 2.1861 -0.2202 5.9513 26 6 1.1350 0.1017 4.8845 27 1 -0.3632 0.5133 0.8902 28 1 -0.3633 0.5143 -0.8898 29 1 -0.3632 -1.0277 -0.0005 30 1 3.8193 0.3091 -1.2959 31 1 3.7101 -1.2202 -2.2005 32 1 5.1059 -1.4496 -0.1421 33 1 3.6615 -2.4901 -0.0864 34 1 3.9690 0.2437 1.2408 35 1 3.9394 -1.3325 2.0706 36 1 2.0267 -2.4531 2.7668 37 1 0.7323 -2.5701 3.9866 38 1 3.6808 -1.9690 4.5063 39 1 2.8076 -3.4580 4.9419 40 1 1.3055 -2.1306 6.4171 41 1 3.4358 -3.1418 7.2823 42 1 4.2573 -1.5938 6.9705 43 1 5.2638 -2.4582 10.4056 44 1 1.8970 0.2386 6.8969 45 1 3.1544 0.1703 5.6384 46 1 0.1507 -0.2073 5.2362 47 1 1.1340 1.1731 4.6841 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335502246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:28 Heat of formation + Delta-G solvation = -128.857065 kcal Electronic energy + Delta-G solvation = -25159.383609 eV Core-core repulsion = 21726.017030 eV Total energy + Delta-G solvation = -3433.366579 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.82073 -39.98143 -38.60987 -35.77080 -34.84435 -33.89840 -33.70284 -32.00781 -30.01695 -28.86631 -26.55684 -25.72220 -24.21552 -23.69930 -23.08732 -21.80298 -21.00602 -19.78342 -18.54740 -18.35083 -17.38593 -17.02184 -16.53821 -16.36260 -16.23284 -15.76347 -15.35542 -15.12917 -14.97519 -14.76234 -14.48513 -14.12327 -13.99908 -13.92684 -13.57191 -13.39742 -13.17606 -13.07553 -12.98097 -12.72932 -12.52995 -12.39766 -12.32777 -12.14079 -12.02511 -11.95265 -11.74663 -11.35954 -11.30428 -11.05924 -10.98740 -10.64377 -10.52696 -10.41185 -9.62744 -8.17806 -6.26400 1.38819 1.40412 1.52048 1.52748 1.95571 2.41505 2.78552 3.16148 3.43030 3.56941 3.72932 3.82984 3.98023 4.01283 4.06126 4.12362 4.16537 4.23059 4.33022 4.40310 4.43355 4.55331 4.57876 4.67557 4.73870 4.75364 4.80117 4.85461 4.87752 4.93192 4.97994 5.05138 5.07918 5.10830 5.22797 5.27103 5.30439 5.33513 5.37961 5.55204 5.59566 5.80901 5.90115 6.22219 6.29427 6.41297 6.90555 7.10494 7.42201 8.94064 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.029974 B = 0.003315 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.913091 B = 8444.750149 C = 8948.646294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.108 3.892 3 H 0.051 0.949 4 O -0.387 6.387 5 C 0.051 3.949 6 C -0.146 4.146 7 C -0.114 4.114 8 C -0.132 4.132 9 H 0.120 0.880 10 C 0.522 3.478 11 O -0.582 6.582 12 N -0.604 5.604 13 C 0.109 3.891 14 C -0.124 4.124 15 C -0.073 4.073 16 C 0.033 3.967 17 C -0.528 4.528 18 H 0.062 0.938 19 C -0.001 4.001 20 N -0.935 5.935 21 Si 0.956 3.044 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.283 1.283 25 C -0.109 4.109 26 C 0.118 3.882 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.062 0.938 41 H -0.007 1.007 42 H -0.015 1.015 43 H 0.261 0.739 44 H 0.066 0.934 45 H 0.040 0.960 46 H 0.078 0.922 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 -0.151 -21.351 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.050 3.950 3 H 0.070 0.930 4 O -0.306 6.306 5 C -0.025 4.025 6 C -0.184 4.184 7 C -0.152 4.152 8 C -0.153 4.153 9 H 0.138 0.862 10 C 0.311 3.689 11 O -0.463 6.463 12 N -0.336 5.336 13 C -0.013 4.013 14 C -0.162 4.162 15 C -0.092 4.092 16 C -0.004 4.004 17 C -0.566 4.566 18 H 0.080 0.920 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.782 3.218 22 H -0.185 1.185 23 H -0.206 1.206 24 H -0.209 1.209 25 C -0.147 4.147 26 C -0.005 4.005 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.011 0.989 42 H 0.003 0.997 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.520 0.326 -21.413 22.115 hybrid contribution 0.493 0.504 1.762 1.898 sum -5.026 0.830 -19.650 20.300 Atomic orbital electron populations 1.21768 0.92370 1.03223 1.02680 1.21739 0.95659 0.94280 0.83345 0.93049 1.87926 1.22514 1.77978 1.42196 1.22826 0.79928 1.00204 0.99556 1.22172 1.02436 1.00590 0.93161 1.21585 0.91681 1.01721 1.00200 1.22029 0.98847 1.01944 0.92481 0.86243 1.20819 0.76145 0.87017 0.84916 1.90651 1.52347 1.17425 1.85834 1.48273 1.68429 1.09429 1.07492 1.22033 0.99970 0.78668 1.00638 1.21940 0.98436 1.01400 0.94408 1.21042 0.99123 0.94525 0.94518 1.19017 0.93611 0.94668 0.93106 1.21709 1.05145 1.35749 0.93964 0.92009 1.25908 0.95158 0.95749 1.03056 1.70101 1.13632 1.43909 1.29923 0.85525 0.78683 0.78091 0.79539 1.18521 1.20581 1.20895 1.21739 0.97955 0.96976 0.98061 1.21578 0.98203 0.97158 0.83539 0.91951 0.91116 0.90892 0.93217 0.86519 0.88721 0.89710 0.92512 0.90400 0.87256 0.89509 0.92810 0.90022 0.91943 0.98905 0.99686 0.93029 0.91541 0.94104 0.90330 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.32 71.98 0.67 -2.24 16 2 C 0.11 2.35 2.42 30.62 0.07 2.43 16 3 H 0.05 1.31 7.79 -2.38 -0.02 1.29 16 4 O -0.39 -7.79 10.41 -148.98 -1.55 -9.34 16 5 C 0.05 0.75 6.84 72.01 0.49 1.25 16 6 C -0.15 -1.99 6.14 30.69 0.19 -1.80 16 7 C -0.11 -2.15 5.20 30.71 0.16 -1.99 16 8 C -0.13 -2.74 1.40 -11.46 -0.02 -2.75 16 9 H 0.12 2.03 6.28 -2.38 -0.01 2.02 16 10 C 0.52 14.33 6.04 87.65 0.53 14.86 16 11 O -0.58 -20.02 14.57 -3.06 -0.04 -20.07 16 12 N -0.60 -16.15 2.97 -818.75 -2.43 -18.59 16 13 C 0.11 2.37 6.27 86.35 0.54 2.91 16 14 C -0.12 -3.55 5.36 30.67 0.16 -3.39 16 15 C -0.07 -2.74 2.10 -10.77 -0.02 -2.76 16 16 C 0.03 1.65 4.45 29.85 0.13 1.79 16 17 C -0.53 -28.85 8.39 25.60 0.21 -28.63 16 18 H 0.06 3.24 7.05 -2.91 -0.02 3.22 16 19 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 20 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 21 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 C -0.11 -3.92 5.19 30.67 0.16 -3.77 16 26 C 0.12 3.54 6.42 86.36 0.55 4.09 16 27 H 0.06 1.47 6.66 -2.39 -0.02 1.45 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.48 7.92 -2.38 -0.02 1.46 16 36 H 0.11 1.78 5.20 -2.39 -0.01 1.77 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 41 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 43 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.07 2.60 6.91 -2.39 -0.02 2.58 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.08 2.45 7.03 -2.39 -0.02 2.43 16 Total: -1.00 -67.77 358.36 3.51 -64.26 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.92 Total: 13.42 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 4.31 Total: -19.64 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -2.15 Total: -74.53 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.59 Total: -29.40 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.77 3.51 -64.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335502246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.596 kcal (2) G-P(sol) polarization free energy of solvation -67.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds