Wall clock time and date at job start Tue Mar 31 2020 07:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.48368 * 2 1 4 4 O 1.42904 * 109.48705 * 120.02704 * 2 1 3 5 5 C 1.42897 * 114.09945 * 181.14597 * 4 2 1 6 6 C 1.53094 * 109.41558 * 298.84133 * 5 4 2 7 7 C 1.53185 * 109.16004 * 57.60691 * 6 5 4 8 8 C 1.53088 * 109.48110 * 239.97066 * 2 1 3 9 9 H 1.09005 * 109.56940 * 62.46309 * 8 2 1 10 10 C 1.50695 * 109.52650 * 302.30895 * 8 2 1 11 11 O 1.21284 * 119.99973 * 334.25175 * 10 8 2 12 12 N 1.34778 * 120.00233 * 154.25504 * 10 8 2 13 13 C 1.46923 * 120.62954 * 184.93326 * 12 10 8 14 14 C 1.53624 * 108.54270 * 126.37047 * 13 12 10 15 15 C 1.53040 * 109.24209 * 54.85459 * 14 13 12 16 16 C 1.52998 * 109.45982 * 178.49425 * 15 14 13 17 17 C 1.50702 * 109.47035 * 295.06742 * 16 15 14 18 18 H 1.07998 * 120.00165 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00084 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00009 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00102 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47112 * 89.99955 * 21 19 17 23 23 H 1.48503 * 109.47253 * 210.00135 * 21 19 17 24 24 H 1.48503 * 109.46668 * 330.00219 * 21 19 17 25 25 C 1.53043 * 109.53813 * 298.51130 * 15 14 13 26 26 C 1.46918 * 120.62879 * 5.21637 * 12 10 8 27 27 H 1.08994 * 109.47390 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47250 * 300.02569 * 1 2 3 29 29 H 1.09000 * 109.46876 * 60.02388 * 1 2 3 30 30 H 1.09002 * 109.48503 * 178.85466 * 5 4 2 31 31 H 1.09003 * 109.47978 * 58.82638 * 5 4 2 32 32 H 1.08999 * 109.52068 * 177.51065 * 6 5 4 33 33 H 1.08996 * 109.52223 * 297.70348 * 6 5 4 34 34 H 1.09003 * 109.54320 * 62.89090 * 7 6 5 35 35 H 1.09001 * 109.53916 * 183.15220 * 7 6 5 36 36 H 1.09003 * 109.58845 * 246.20377 * 13 12 10 37 37 H 1.09000 * 109.58692 * 6.63142 * 13 12 10 38 38 H 1.09009 * 109.63403 * 294.86742 * 14 13 12 39 39 H 1.08996 * 109.46061 * 174.74500 * 14 13 12 40 40 H 1.08996 * 109.46006 * 58.53548 * 15 14 13 41 41 H 1.08999 * 109.47502 * 55.07020 * 16 15 14 42 42 H 1.09003 * 109.46880 * 175.06894 * 16 15 14 43 43 H 0.97003 * 119.99902 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.50012 * 301.41689 * 25 15 14 45 45 H 1.08999 * 109.52154 * 181.33094 * 25 15 14 46 46 H 1.09005 * 109.59039 * 353.36818 * 26 12 10 47 47 H 1.09001 * 109.58776 * 113.79593 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 8 2.0067 -0.6741 1.1664 5 6 3.4308 -0.7091 1.2790 6 6 4.0178 -1.4598 0.0808 7 6 3.5711 -0.7706 -1.2123 8 6 2.0405 -0.7223 -1.2495 9 1 1.7147 -0.1853 -2.1404 10 6 1.4929 -2.1259 -1.2791 11 8 1.1793 -2.6764 -0.2449 12 7 1.3515 -2.7695 -2.4548 13 6 0.7198 -4.0948 -2.5114 14 6 -0.4230 -4.0479 -3.5370 15 6 0.1233 -3.5546 -4.8787 16 6 -1.0031 -3.5416 -5.9140 17 6 -1.4698 -4.9522 -6.1661 18 1 -1.0088 -5.7756 -5.6409 19 6 -2.4846 -5.1917 -7.0682 20 7 -2.8922 -6.4226 -7.2878 21 14 -3.2816 -3.7677 -7.9774 22 1 -2.5498 -3.5182 -9.2452 23 1 -4.6962 -4.1032 -8.2801 24 1 -3.2323 -2.5495 -7.1294 25 6 0.6813 -2.1389 -4.7148 26 6 1.8316 -2.1618 -3.7033 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5143 0.8898 29 1 -0.3633 0.5135 -0.8902 30 1 3.7102 -1.2200 2.2004 31 1 3.8192 0.3092 1.2957 32 1 5.1060 -1.4493 0.1420 33 1 3.6616 -2.4899 0.0863 34 1 3.9688 0.2438 -1.2409 35 1 3.9392 -1.3324 -2.0708 36 1 1.4568 -4.8382 -2.8152 37 1 0.3215 -4.3520 -1.5299 38 1 -1.2003 -3.3677 -3.1884 39 1 -0.8419 -5.0466 -3.6597 40 1 0.9174 -4.2213 -5.2147 41 1 -1.8348 -2.9454 -5.5387 42 1 -0.6363 -3.1085 -6.8446 43 1 -3.6065 -6.5911 -7.9222 44 1 -0.1062 -1.4768 -4.3551 45 1 1.0489 -1.7788 -5.6756 46 1 2.1672 -1.1432 -3.5085 47 1 2.6575 -2.7508 -4.1023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335502249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:36 Heat of formation + Delta-G solvation = -101.493111 kcal Electronic energy + Delta-G solvation = -25475.013616 eV Core-core repulsion = 22042.833627 eV Total energy + Delta-G solvation = -3432.179989 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87358 -38.79591 -37.06744 -34.29610 -33.66254 -32.91803 -32.07909 -30.76940 -28.78292 -27.88916 -25.22090 -24.37202 -23.14504 -22.30381 -21.97548 -20.82660 -19.52064 -18.43628 -17.16885 -16.70401 -16.44327 -15.85467 -15.68500 -15.17127 -14.70380 -14.36901 -14.19998 -14.06914 -13.71120 -13.32671 -13.03483 -12.95540 -12.81922 -12.71224 -12.36155 -12.29684 -12.17362 -11.95670 -11.78201 -11.48758 -11.26102 -11.15120 -10.94015 -10.83403 -10.65942 -10.55260 -10.36260 -9.82231 -9.75748 -9.63152 -9.50448 -9.28332 -9.05738 -8.54618 -8.33756 -6.05155 -4.02695 2.78880 3.13515 3.28613 3.36833 3.39696 3.70865 4.32782 4.43853 4.48405 4.54891 4.71077 4.75706 4.94840 5.08620 5.14081 5.18857 5.24725 5.26948 5.32669 5.38976 5.44399 5.49578 5.54104 5.55399 5.62150 5.65127 5.74966 5.85333 5.86514 5.90130 6.02387 6.03979 6.20456 6.23481 6.31944 6.43490 6.59341 6.83047 6.86104 7.02086 7.20920 7.22111 7.41811 7.61365 7.78687 8.39237 8.52792 8.99730 9.57700 11.08156 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.030615 B = 0.003476 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.357131 B = 8054.321896 C = 8145.903908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.109 3.891 3 H 0.061 0.939 4 O -0.356 6.356 5 C 0.064 3.936 6 C -0.159 4.159 7 C -0.111 4.111 8 C -0.145 4.145 9 H 0.100 0.900 10 C 0.521 3.479 11 O -0.523 6.523 12 N -0.609 5.609 13 C 0.110 3.890 14 C -0.118 4.118 15 C -0.072 4.072 16 C -0.009 4.009 17 C -0.516 4.516 18 H 0.073 0.927 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.266 1.266 25 C -0.134 4.134 26 C 0.106 3.894 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.015 0.985 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.997 15.186 12.342 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.051 3.949 3 H 0.079 0.921 4 O -0.274 6.274 5 C -0.013 4.013 6 C -0.197 4.197 7 C -0.149 4.149 8 C -0.167 4.167 9 H 0.118 0.882 10 C 0.308 3.692 11 O -0.398 6.398 12 N -0.343 5.343 13 C -0.012 4.012 14 C -0.156 4.156 15 C -0.090 4.090 16 C -0.046 4.046 17 C -0.554 4.554 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.191 1.191 25 C -0.172 4.172 26 C -0.017 4.017 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.563 14.688 12.942 23.815 hybrid contribution -0.263 0.748 -1.123 1.375 sum 13.300 15.436 11.819 23.555 Atomic orbital electron populations 1.21868 0.92829 1.04239 1.02050 1.21813 0.95493 0.93598 0.84041 0.92132 1.88080 1.19970 1.77742 1.41626 1.22481 0.81905 0.98690 0.98237 1.22211 1.00734 1.01527 0.95198 1.21543 0.92750 1.01702 0.98856 1.22141 0.97563 0.95587 1.01391 0.88219 1.20218 0.78310 0.87358 0.83270 1.90716 1.49629 1.67661 1.31843 1.48219 1.59668 1.19746 1.06682 1.21829 0.95502 0.82704 1.01132 1.21967 0.96251 1.03455 0.93917 1.20996 0.98839 0.93460 0.95741 1.19614 0.93534 0.97979 0.93479 1.21137 1.18472 0.91888 1.23922 0.90852 1.25032 0.96592 0.95328 0.96578 1.69913 1.29233 1.19310 1.35831 0.86809 0.78683 0.83514 0.80420 1.20406 1.21474 1.19106 1.22077 0.97373 0.99628 0.98111 1.21832 0.97198 0.97983 0.84690 0.90548 0.91778 0.91425 0.89100 0.93747 0.90931 0.90455 0.90781 0.90899 0.91962 0.89632 0.92470 0.89367 0.91802 0.96712 0.97117 0.92791 0.92020 0.91164 0.90461 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.25 37.16 0.34 -1.41 16 2 C 0.11 1.21 2.84 -26.69 -0.08 1.13 16 3 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 4 O -0.36 -4.68 8.99 -55.62 -0.50 -5.18 16 5 C 0.06 0.63 6.84 37.21 0.25 0.89 16 6 C -0.16 -1.52 5.81 -26.59 -0.15 -1.68 16 7 C -0.11 -0.97 5.33 -26.55 -0.14 -1.11 16 8 C -0.15 -1.55 1.73 -91.64 -0.16 -1.71 16 9 H 0.10 0.91 6.44 -51.93 -0.33 0.57 16 10 C 0.52 7.40 5.10 -10.99 -0.06 7.35 16 11 O -0.52 -9.21 12.79 -14.84 -0.19 -9.40 16 12 N -0.61 -8.54 2.97 -172.51 -0.51 -9.05 16 13 C 0.11 1.73 6.45 -3.49 -0.02 1.71 16 14 C -0.12 -2.11 5.21 -26.39 -0.14 -2.25 16 15 C -0.07 -1.31 2.10 -90.58 -0.19 -1.50 16 16 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 17 C -0.52 -14.15 8.94 -34.44 -0.31 -14.45 16 18 H 0.07 2.15 7.30 -52.49 -0.38 1.77 16 19 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 20 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 21 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 25 C -0.13 -1.90 5.36 -26.61 -0.14 -2.05 16 26 C 0.11 1.25 5.90 -3.71 -0.02 1.23 16 27 H 0.08 1.10 6.31 -51.93 -0.33 0.78 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.96 7.00 -51.93 -0.36 0.60 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.61 7.52 -51.93 -0.39 0.22 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.42 7.04 -51.93 -0.37 1.05 16 38 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 39 H 0.09 1.77 6.91 -51.93 -0.36 1.41 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 42 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.08 0.72 5.16 -51.93 -0.27 0.45 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -32.27 349.36 -9.06 -41.33 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.22 Total: -0.60 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -1.01 Total: -12.36 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.26 Total: -35.83 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.69 Total: -14.58 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.27 -9.06 -41.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335502249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.166 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds